NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAT
TCTCTGAATTTCGAAAGAAATAGAAGTTATTCCCTGTTATGATATCAAGC
AATTACTTTTGTTTATTCACCATAATGAATAATAATTCATTAATATTCAT
TAATATTCTTTTTGGTAATTTATTGCATTTTTCTTAATACGTTGTTTATA
GTTCCATTTTGTTTTCAACCTATTCATGGGAAGTCAGGTAAGACAAACTT
CTTTTTAATCATGTCAACAAAAAACAACTCAGCGCCCGAGGTCATAATTA
TTTCATGCAGAAATATATTCACAGATGTTTCTCTACATTCACCCAGGAGA
TTTGTTTTTATTTTAAATTTCTTGGAAATTTTTCTCTCATGTTGTTAATA
TGAATTTTCTATTTTCTTGAAAATGAACCTTAAAAAAATTCCGATGGTAT
TTTCTGATTGTATTTTCTAACATTTACTTTACAGAAGTAGAGCCTATAGT
TTTTTAAGCAGAATATATCAGAAGTAATTTTTCTTTCTTTTTCTGTATTA
CCATACACAATTAAAAACGAGATATTTTTAAATTAACACCATCTACCTAT
TGGATGAATATTCTTGAATTATTTACTCAATTGTATTTTAGGTTGTTCAA
AAAAATGAAAAACTAAGAATTTATACAAACCTTAATAGTACAAGTCAAGT
TATGACTGCAACATTTGATAAGTACATTCTTCAAATTTATGATAAAGTAA
T

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTTCATGTCCCCAGATGCCT
GCTTCTTTGTTCTTTGTTAATTCCCCCTCAGCCCCTCCCTGTTTCCCCTC
ACTGTGTGCTTATAACCTGGCTTTTCAGCCTAATAAACTCAGACCTTGAC
AGGAATCTCCTTGGTCTCTCTCCTTTTTTCCCCGCCCATTTCTCTTGCAG
GTTTGTGGTTCCCCTCGTACCCACGAATAACTGGGTCCTGCTGGTCAGAC
GGTCATCTATCCCAGTCCAGAAACCCAGGGCATACTACACAGACTACACA
CAGCTATTGAGCGATTGAGTGTATAGAATGTCTTTTCCAAATGGCTGTCC
ACTTGCACTAAGTCTTCCAGGAAGCTCAGTGCTCTCTGCTTCTTTGAGAC
TGCTTGCATTGTTTGCTTTTCCAGACTGCCTGGATAGTAACTTCTTTTGC
TGGATTGTATCTGCCTTTTCAAGCACTTGGGCTCCACTTAGAATGACTCT
AAGCAGGTCGGACCACTTACACACTTTTCTGGATGGAGGGGATAAGTAAA
TCTACTCAGTTTCCGGGACTCCCTGAAGGTCTTTTGAGTTGGCTATTTCA
TTTTTTAAGAGAAATATCCCCTTCAATATTTCATCTCTGCTTAGAACATC
CTATTATTTGACTATTCTGCTAACATTTTGTCGTTTTTTTCAATAAGGAT
TGGAGAT

Query= MSMg01no543_c14.b1 MSMg01no543_c14.b1 CHROMAT_FILE:
MSMg01no543_c14.b1 PHD_FILE: MSMg01no543_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:26 2005
         (648 letters)



>mm_chr15_47113988_47115035
          Length = 1048

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagttattccctgttatgatatcaagcaattacttttgtttattcaccataatgaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaagttattccctgttatgatatcaagcaattacttttgtttattcaccataatgaataa 789

                                                                       
Query: 61  taattcattaatattcattaatattctttttggtaatttattgcatttttcttaatacgt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 788 taattcattaatagtcattaatattctttttggtaatttattgcatttttcttaatatgt 729

                                                                       
Query: 121 tgtttatagttccattttgttttcaacctattcatgggaagtcaggtaagacaaacttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgtttatagttccattttgttttcaacctattcatgggaagtcaggtaagacaaacttct 669

                                                                       
Query: 181 ttttaatcatgtcaacaaaaaacaactcagcgcccgaggtcataattatttcatgcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttttaatcatgtcaacaaaaaacaactcagcgcccgaggtcataattatttcatgcagaa 609

                                                                       
Query: 241 atatattcacagatgtttctctacattcacccaggagatttgtttttattttaaatttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atatattcacagatgtttctctacattcacccaggagatttgtttttattttaaatttct 549

                                                                       
Query: 301 tggaaatttttctctcatgttgttaatatgaattttctattttcttgaaaatgaacctta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 548 tggaaatttttctctcatgttgttaatatgaattttctattttcttgaaaatgaacttta 489

                                                                       
Query: 361 aaaaaattccgatggtattttctgattgtattttctaacatttactttacagaagtagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaaaattccgatggtattttctgattgtattttctaacatttactttacagaagtagag 429

                                                                       
Query: 421 cctatagttttttaagcagaatatatcagaagtaatttttctttctttttctgtattacc 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctatggttttttaagcagaatatatcagaagtaatttttctttctttttctgtattacc 369

                                                                       
Query: 481 atacacaattaaaaacgagatatttttaaattaacaccatctacctattggatgaatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atacacaattaaaaacgagatatttttaaattaacaccatctacctattggatgaatatt 309

                                                                       
Query: 541 cttgaattatttactcaattgtattttaggttgttcaaaaaaatgaaaaactaagaattt 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 308 cttgaattatttactcaattgtattttaggttgttcaaaaaaaagaaaaactaagaattt 249

                                                           
Query: 601 atacaaaccttaatagtacaagtcaagttatgactgcaacatttgata 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atacaaaccttaatagtacaagtcaagttatgactgcaacatttgata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)