Query= MSMg01no543_i24.b1 MSMg01no543_i24.b1 CHROMAT_FILE:
MSMg01no543_i24.b1 PHD_FILE: MSMg01no543_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:58 2005
(588 letters)
>mm_chr15_86965795_86966782
Length = 988
Score = 1087 bits (562), Expect = 0.0
Identities = 577/582 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaacctcagttccccatggcaggtgtctctcaaggccaaccccatgattccctg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaacctcagaaacccatggcaggtgtctctcaaggccaaccccatgattccctg 264
Query: 65 caaccatacacactagttcctgtctcattgctgtcaccaaatactcaagaggaaacttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaccatacacactagttcctgtctcattgctgtcaccaaatactcaagaggaaacttaa 324
Query: 125 ggagggccttattttggctcaaagttagagagtacaagccattatggagggagggaggga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagggccttattttggctcaaagttagagagtacaagccattatggagggagggaggga 384
Query: 185 gtggaatagagaactcaggggagctcctgagccattatgattgacatataaagaaaccac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggaatagagaactcaggggagctcctgagccattatgattgacatataaagaaaccac 444
Query: 245 tgtacagacagacctgaaacccctccccaccagggttacgagtgtgtttcagaacgtgtt 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtacagacagacctgaaacccttccccaccagggttacgagtgtgtttcagaacgtgtt 504
Query: 305 cacagtttaaagatacagtccatcgtagcaggggaggtacagcagagctagaggcagctg 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 cacagtttaaagatacagtccatcgtagcaggggaggtacagcagagctggaggcagctg 564
Query: 365 ctcacattgcatcttctgccaggaagcagagtgaaggctgacactcagctcagattcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcacattgcatcttctgccaggaagcagagtgaaggctgacactcagctcagattcttc 624
Query: 425 tttttattcagcctgggaccccagtccctggcacgatgctgtccaccctcaggctaggtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttttattcagcctgggaccccagtccctggcacgatgctgtccaccctcaggctaggtc 684
Query: 485 ttcttggctcactttgttgtggaaacacctttatgacaaagccagaggtgtgtttctatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcttggctcactttgttgtggaaacacctttatgacaaagccagaggtgtgtttctatg 744
Query: 545 gtgattctaaattcatctgagttgacattgaaggtgaaccga 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgattctaaattcatctgagttgacattgaaggtgaaccga 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_i24.g1 MSMg01no543_i24.g1 CHROMAT_FILE:
MSMg01no543_i24.g1 PHD_FILE: MSMg01no543_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:59 2005
(609 letters)
>mm_chr15_87143899_87144909
Length = 1011
Score = 1048 bits (542), Expect = 0.0
Identities = 594/616 (96%), Gaps = 12/616 (1%)
Strand = Plus / Minus
Query: 1 caggagatccttcttcctatgatgtaggacacaacctggtccagacatatcagcccccag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 811 caggagatccttcttcctatgatgtaggacacagcctggtccagacatatcagcccccag 752
Query: 61 agctcacatcttctaaatcttgctgatataaaggat-ggggcacacaagcagcaatgatg 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 751 agctcacatcttctaaatcttgctgatataaaggatgggggcacacaagcagcaatgatg 692
Query: 120 ggaacagccccatgatccttgctgtgaatcacagcta--actcatgggatgttttccttg 177
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 691 ggaacagccccatgatccttgctgtgaaccacagctaacactcatgggatgttttccttg 632
Query: 178 gctctttctgatcttactgcatgcagagaagccatatctggagtcagggatgagtctcac 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 631 gctctttctgatcttactgcatgcagagaagccatagctggagtcagggatgagtctcac 572
Query: 238 accgaccccagccttggctggtattcgcgtttgagcaaatacgcaataagtactgaacat 297
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 571 accgaccccagccttggctggtattcgtgtttgagcaaatacgcaataagtactgaacat 512
Query: 298 tggttttcagatataactcagcagacgccttgggctctgtccttagcattgtatgaggaa 357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 511 tggttttcagatataactcagcagacgcctt-ggctctgtccttagcattgtatgaggaa 453
Query: 358 aaagagtgggataaaatgtaaatggccctttaaaaattgcacccgtgtac----gcacca 413
||| |||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct: 452 aaacagtgggataaaatgtaaatggccctttaaaaaatgcaccc----acatatgcacca 397
Query: 414 cgtatacatggtatggcttatatgtaaccagatccctattagagatgtgttgaaatccac 473
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cgtatacatggtatgacttatatgtaaccagatccctattagagatgtgttgaaatccac 337
Query: 474 tgataaacatgacccatgcagagctttctgaatgagtgatagtttcaagatcctaagaga 533
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgataaacatgacccatggagagctttctgaatgagtgatagtttcaagatcctaagaga 277
Query: 534 aggtattggtcctcttgctttgcttttaattgtcagtgcaattcttactgatataaaggg 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggtattggtcctcttgctttgcttttaattgtcagtgcaattcttactgatataaagga 217
Query: 594 taatcgctgtaactgt 609
|||| |||||||||||
Sbjct: 216 taattgctgtaactgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1011
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1001
Effective search space: 599599
Effective search space used: 599599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
