CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACATATTTACCCTTTGGTTTATAATACTTTAAAGATTCTTAAGT
TTTACATAGCCAAGTCTAAATATTAATATGTGTACATTCTATAATTCTGG
TTGTTCTCTCTTGACTCATGTTTTTTAGCATGATAGTTCTATTAGCAGTT
TTGGTTTTTTCAGTGTTTCATGGGCCTCATAGAGACAAAAGTGTCTCCAA
ACTTTGTTTCCCATTTAAATTCTGTTTCTACTAGTTAAAGTGTAGGTTGG
ATTATGACTTCAAATGATCTGTTCAGATGTCAAATTAATAAGAAGTGAGC
TTTGGGTGTGTATTTTTCCATTGTCAGTTGATTAGATTAAGTAATAGTTA
TGGCATTAATAAGGCACACCTGCAGAAGCATCTGTTTGGTTGTTACCTGA
GGGCCCACTATGAGTGTAAGCAGAGCCATCTCAGAGGATGGAATCCTGAG
TGAATAAAAAAGAAAGGAGATGTTTGACAAACAGCCTTTCCATTTTTCTG
ATGCCTGGCGTGTTGTCAAACAAGCTATTCCCTCCCTGGAATTTATACAC
TGTGTCTTTAAACCATGAGCCAAAATAAACATTTATACCCTTAAGTAGCA
TTTTGCAGGTTTTTGGTCAACAGTAACAAGAAAGATAACTAATATATAAA
ATTGGTATTGGAAATTGCATCTCTGGCCTAATAAATCTGACCTTAATGGT
TTACAGGCCTAANGAGTTAAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATGGAATGGCTG
AGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAACTTCAGGTGACAGCAGATGCTGTCAAGGATGTGGAAAAAGAGGAA
CACGCCTCCATTTTTGGTGGGATAGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCAGAAAATTGGACATGGTACTACCAGAGGATCC
TGCAATACCTCTCCTGGGCATATATTTGGAAGATGTTCCAACTGGTAAGA
AGGACACATGCTCTACTATGTTCTTAGCAGGCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAAATGCCCCTCAACAGAGGAATGGATACAAAAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCCAATGGATGGACCTGGAGGACATCATCCTGAG
TGAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATGT
GGATATTAGCCCAGAAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAA
AGGGATTTGCAACACTATAGGTGGAACAACAGTATGAACTAAGATGGCCT
AGTCGCCCATCTGTGGAAAGAGAG

Query= MSMg01no543_l17.b1 MSMg01no543_l17.b1 CHROMAT_FILE:
MSMg01no543_l17.b1 PHD_FILE: MSMg01no543_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:11 2005
         (714 letters)



>mm_chr15_56592807_56593921
          Length = 1115

 Score = 1152 bits (596), Expect = 0.0
 Identities = 602/604 (99%), Gaps = 1/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacatatttaccctttggtttataatactttaaagattcttaagttttacatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaattcaacatatttaccctttggtttataatactttaaagattcttaagttttacatag 545

                                                                       
Query: 65  ccaagtctaaatattaatatgtgtacattctataattctggttgttctctcttgactcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccaagtctaaatattaatatgtgtacattctataattctggttgttctctcttgactcat 485

                                                                       
Query: 125 gttttttagcatgatagttctattagcagttttgg-ttttttcagtgtttcatgggcctc 183
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 484 gttttttagcatgatagttctattagcagttttggtttttttcagtgtttcatgggcctc 425

                                                                       
Query: 184 atagagacaaaagtgtctccaaactttgtttcccatttaaattctgtttctactagttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atagagacaaaagtgtctccaaactttgtttcccatttaaattctgtttctactagttaa 365

                                                                       
Query: 244 agtgtaggttggattatgacttcaaatgatctgttcagatgtcaaattaataagaagtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agtgtaggttggattatgacttcaaatgatctgttcagatgtcaaattaataagaagtga 305

                                                                       
Query: 304 gctttgggtgtgtatttttccattgtcagttgattagattaagtaatagttatggcatta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctttgggtgtgtatttttccattgtcagttgattagattaagtaatagttatggcatta 245

                                                                       
Query: 364 ataaggcacacctgcagaagcatctgtttggttgttacctgagggcccactatgagtgta 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 ataaggcacacctgcagaagcatctgtgtggttgttacctgagggcccactatgagtgta 185

                                                                       
Query: 424 agcagagccatctcagaggatggaatcctgagtgaataaaaaagaaaggagatgtttgac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agcagagccatctcagaggatggaatcctgagtgaataaaaaagaaaggagatgtttgac 125

                                                                       
Query: 484 aaacagcctttccatttttctgatgcctggcgtgttgtcaaacaagctattccctccctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaacagcctttccatttttctgatgcctggcgtgttgtcaaacaagctattccctccctg 65

                                                                       
Query: 544 gaatttatacactgtgtctttaaaccatgagccaaaataaacatttatacccttaagtag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gaatttatacactgtgtctttaaaccatgagccaaaataaacatttatacccttaagtag 5

               
Query: 604 catt 607
           ||||
Sbjct: 4   catt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1115
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1105
Effective search space:   777920
Effective search space used:   777920
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)