Query= MSMg01no543_o18.b1 MSMg01no543_o18.b1 CHROMAT_FILE:
MSMg01no543_o18.b1 PHD_FILE: MSMg01no543_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:25 2005
(717 letters)
>mm_chr15_20389197_20390314
Length = 1118
Score = 1357 bits (702), Expect = 0.0
Identities = 711/714 (99%), Gaps = 1/714 (0%)
Strand = Plus / Minus
Query: 5 gaattc-caatattaggatcttttcctccaattcaagtttgtaagaatactcataactta 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 gaattcacaatattaggatcttttcctccaattcaagtttgtaagaatactcataactta 859
Query: 64 ccagttttctgtagtgacatgaactaatggaccatctttaaattaattcactaacagagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ccagttttctgtagtgacatgaactaatggaccatctttaaattaattcactaacagagc 799
Query: 124 cagaacacgatacaaagtctctttgcctgcacggctctgaaactggcatcacacgcacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cagaacacgatacaaagtctctttgcctgcacggctctgaaactggcatcacacgcacac 739
Query: 184 atgaacttaccattgttcatcgctcccatggctgtcatcactattgtaaatcacaaagta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atgaacttaccattgttcatcgctcccatggctgtcatcactattgtaaatcacaaagta 679
Query: 244 agaataaatgaagttgtttccctactgtcattcatattccatagctttcagtatagtgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaataaatgaagttgtttccctactgtcattcatattccatagctttcagtatagtgtg 619
Query: 304 aaagtatttcatttttaggaagaattagtgtctaaagtgtttattttcttctatgggaaa 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 618 aaagtatttcatttttaggaagaattagtgcctaaagtgtttattttcttctatgggaaa 559
Query: 364 cacttagctagctttagagattccagtgaagaagttgttcttttgtgtgcacatgtgtct 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacttagctagctttagagattccagtgaagaagttgttcttttgtgtgcacatgtgtct 499
Query: 424 atttttatgtgtgcatatgagtgcacacaggagtgataaagttgaaatgtgaggacatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atttttatgtgtgcatatgagtgcacacaggagtgataaagttgaaatgtgaggacatta 439
Query: 484 aaaaatgctctgaaaagcacataaagtatgttttccagtgtatccccctcaattttcaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaaatgctctgaaaagcacataaagtatgttttccagtgtatccccctcaattttcaag 379
Query: 544 acatcttaacacagatgtatgcttctggagatatggtgcacaatttaacaggaatataaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acatcttaacacagatgtatgcttctggagatatggtgcacaatttaacaggaatataaa 319
Query: 604 ataaacaattgtcatgttggcaatagagacaatttggctgcttgctgattatatttatgg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ataaacaattgtcatgttggcaatagagacaatttggctgcttgctgattatatttatgg 259
Query: 664 ataatataacattttaacacattatgggtaggcttctacatatgagacggcaca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ataatataacattttaacacattatgggtaggcttctacatatgagacggcaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1118
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1108
Effective search space: 783356
Effective search space used: 783356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_o18.g1 MSMg01no543_o18.g1 CHROMAT_FILE:
MSMg01no543_o18.g1 PHD_FILE: MSMg01no543_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:26 2005
(598 letters)
>mm_chr15_20219076_20220073
Length = 998
Score = 1141 bits (590), Expect = 0.0
Identities = 596/598 (99%)
Strand = Plus / Plus
Query: 1 atttctttcaccttctcaaactttataggatttgggttttttattattgtttttatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctttcaccttctcaaactttataggatttgggttttttattattgtttttatatac 260
Query: 61 gagtgttttatttgcatagatagataagcatcctacacatgacttgatgccctcagatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgttttatttgcatagatagataagcatcctacacatgacttgatgccctcagatat 320
Query: 121 caggaggagggtgtctcatcctttggaactggaattaaatatagttgtagaccatcatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaggagggtgtctcatcctttggaactggaattaaatatagttgtagaccatcatgt 380
Query: 181 ggacagtggaaactgagcccatgttttctttaacagcaacaaatgttaattgttgaataa 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacagtgggaactgagcccatgttttctttaacagcaacaaatgttaattgttgaataa 440
Query: 241 tctttcgaggttgcacctctatattccatagtttaaaagaagcaaaggaagtcatgagat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttcaaggttgcacctctatattccatagtttaaaagaagcaaaggaagtcatgagat 500
Query: 301 tatattttaaaacaattatgttttcatctaaggaagtagtaagttcatacatatataatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatattttaaaacaattatgttttcatctaaggaagtagtaagttcatacatatataatt 560
Query: 361 tttgcaatatgaactccactcaaggtaatacaatggatgcaaatattttgaaattcacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgcaatatgaactccactcaaggtaatacaatggatgcaaatattttgaaattcacaa 620
Query: 421 atgcatagaaagtgaactatatactcaaatatggtataaaatatgtatactcttaaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcatagaaagtgaactatatactcaaatatggtataaaatatgtatactcttaaaaaa 680
Query: 481 tcaaataaattaaactgtttaatgtaagatattatatcacttagaccttagaaccagtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaataaattaaactgtttaatgtaagatattatatcacttagaccttagaaccagtct 740
Query: 541 tctaaaagactatagcaaaatgaacgtttcatgcaaaagaaatagcatatttatattc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctaaaagactatagcaaaatgaacgtttcatgcaaaagaaatagcatatttatattc 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
