Query= MSMg01no545_n09.b1 MSMg01no545_n09.b1 CHROMAT_FILE:
MSMg01no545_n09.b1 PHD_FILE: MSMg01no545_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:55 2005
(598 letters)
>mm_chr15_81812593_81813589
Length = 997
Score = 775 bits (401), Expect = 0.0
Identities = 428/445 (96%), Gaps = 14/445 (3%)
Strand = Plus / Plus
Query: 154 actccatcctggtcagtatttaattaaagcttgtttcaaatttggctcaaaattttttat 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 actccatcctggtcagtatttaattaaagcttgtttcaaatttggctcaaaattttttat 413
Query: 214 tttctaatctcaagattaatatttggaggccccagtgagataagaaagaccactccacac 273
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 414 tttctaatctcaagattaatatttggaggccccagtgagatcagaaagaccattccacac 473
Query: 274 tcaaattctggaggcctgcttttttggtgagtcattgaatcctttttttttttttttttt 333
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 474 tcaaattctggaggcctgcttttt-ggtgagtcattgaatcctttttttttt-------- 524
Query: 334 tttttcctttctctgccactttgtctgctttctggattctggttatggagtactttcctg 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 -----cctttctctgccactttgtctgctttctggattctggttatggagtactttcctg 579
Query: 394 gggagtggtaaggatctgatgaggtttatggaccgctgctcaggacaatatcccttggcc 453
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gggagtggtaaggacctgatgaggtttatggaccgctgctcaggacaatatcccttggcc 639
Query: 454 cacaggttcactggttactcctggggagttcagccagagtcacaacttttttttcttctg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cacaggttcactggttactcctggggagttcagccagagtcacaacttttttttcttctg 699
Query: 514 atttgcccaagactgctctagtgacaccaggggccaataaataaatacactcagcatatc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atttgcccaagactgctctagtgacaccaggggccaataaataaatacactcagcatatc 759
Query: 574 aaagaggcactccacattcaccttc 598
|||||||||||||||||||||||||
Sbjct: 760 aaagaggcactccacattcaccttc 784
Score = 163 bits (84), Expect = 5e-44
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 64 gagtgtccatgtggttttgtccttaaaagcccctacaatccatgctttgttgccactcag 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 gagtgtccatgtggttttgtccttaaaagcccctacaacccatgctttgttgccactcag 298
Query: 124 ctgaaaattccagagagtgatcctcaca 151
||||||||||||||||||||||||||||
Sbjct: 297 ctgaaaattccagagagtgatcctcaca 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space: 580356
Effective search space used: 580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_n09.g1 MSMg01no545_n09.g1 CHROMAT_FILE:
MSMg01no545_n09.g1 PHD_FILE: MSMg01no545_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:55 2005
(571 letters)
>mm_chr15_81987696_81988666
Length = 971
Score = 1002 bits (518), Expect = 0.0
Identities = 557/570 (97%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 1 catttctaccttggacccacagttcagacacctgcttattacatcggcaaggaatgtggc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 568 catttctaccttggacccacagttcagacacctgcttattaaatcggcaaggaatttggc 509
Query: 61 acggaccagaggagatgcccacagatttcagaacgtcacacatctggaataaggtcacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acggaccagaggagatgcccacagatttcagaacgtcacacatctggaataaggtcacca 449
Query: 121 acataccacttactaattgtgtagcatgggcctcagatcctaagtacctggagaactgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acataccacttactaattgtgtagcatgggcctcagatcctaagtacctggagaactgga 389
Query: 181 gataagactaaaaaccaaccagctttattagatgaaaacagtcttacagagtggacagtg 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaaaagactaaaaaccaaccagctttattagatgaaaacagtcttacagagtggacagtg 329
Query: 241 cctggattctggtttcctttgatagcagctcagcccagatcccagctcagacctctgtaa 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 328 cctggattctggtttcctttgatagcagctcagcccaggtcccagctcagacctctgtaa 269
Query: 301 aggtctgagcagatgcagtgctgagcacacggggaagctgcctacctatgacttcaaaag 360
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 268 aggtctgagcagatgcagtgctgagcacacggggatgctgcttacctatgacttcaaaag 209
Query: 361 ctaaagatgctgggcagtggcgcataccttcaatcccagcactcaggaggcagaggcagg 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 208 ctaaagatgctgggcagtggcgcacaccttcaatcccagcactcaggaggcagaggcagg 149
Query: 421 cagatccgtgggagtttgaggccaacctggtttacagagcaagttcagggacagccaact 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cagatctgtgggagtttgaggccaacctggtttacagagcaagttcagggacagccaact 89
Query: 481 ctacaagagaaaccttgtctggaaagacccaaaaaaaggagaagggaaagaaaggaagga 540
||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct: 88 ctacaagagaaaccttgtctggaaaaacccaaaaaa-ggagaaggaaaagaaaggaagga 30
Query: 541 agggagggagggagggagggaagggaggga 570
||| ||||||||||||||||| ||||||||
Sbjct: 29 aggaagggagggagggaggga-gggaggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
