Query= MSMg01no545_n14.b1 MSMg01no545_n14.b1 CHROMAT_FILE:
MSMg01no545_n14.b1 PHD_FILE: MSMg01no545_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:56 2005
(642 letters)
>mm_chr15_87965733_87966774
Length = 1042
Score = 1122 bits (580), Expect = 0.0
Identities = 618/638 (96%), Gaps = 12/638 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccctgactccagtgaccttgttaaagtcacttatgaaatgcaatagtttgtgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccctgactccagtgaccttgttaaagtcacttatgaaatgcaatagtttgtgg 264
Query: 65 gtggcattgggggtatttccacactcacatccctgtcacctatgactaattgcaaatgct 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggaattgggggtatttccacactcacatccctgtcacctatgactaattgcaaatgct 324
Query: 125 tttcttccttcccagtctcaatccagcgcccatttcatctgggccactgcaggatgcgag 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 tttcttccttcccagtctcaatccagcacccatttcatctgggccactgcaggatgcgag 384
Query: 185 tggcccacaaacctgtcccggtacagctctcaggcaaatctgtatttcaccactgattct 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggctcacaaacctgtcccggtacagctctcaggcaaatctgtatttcaccactgattct 444
Query: 245 tttcaccgcagaacttcctgtagccaatcttcatcagagtaatgaagctctcttttattc 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcaccgtagaacttcctgtagccaatcttcatcagagtaatgaagctctcttttattc 504
Query: 305 tagagatttggtttttgaaagtcatgagttgataccggcttcatcggcatacttccctgc 364
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagggatttggtttttgaaagtcatgagttgataccggcttcatcggcatacttccctgc 564
Query: 365 tcctatcaagagagagagagagagagagagagagagagagagagagagagagagagagac 424
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 tcctatcaagagagagagagagagagagagagagagagagagagagt------------c 612
Query: 425 gggtgattgccctttgctttttctgacagcctgttgtgggactttgatttctatctacgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggtgattgccctttgctttttctgacagcctgttgtgggactttgatttctatctacgc 672
Query: 485 cgaaccatggctccttgatgaaataaactgattggtcacaatgcatacaactaagtgaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cgaaccatggctccttgatgaaataaactgattggtcacaatgcatacaactaagtgaaa 732
Query: 545 tttatcaaggtataaataatagggaggaaaatgcttagacttttttttaactgcacagta 604
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 733 tttatcaaggtataaataatagggaggaaaatgcttagatttttttttaactgcacagta 792
Query: 605 gtgtgagtttttatcaaagtatttgcctggctgacacc 642
||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gtgtgagtttttatcaaagtatttgcctggctgacacc 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_n14.g1 MSMg01no545_n14.g1 CHROMAT_FILE:
MSMg01no545_n14.g1 PHD_FILE: MSMg01no545_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:56 2005
(587 letters)
>mm_chr15_88143476_88144458
Length = 983
Score = 1069 bits (553), Expect = 0.0
Identities = 576/585 (98%), Gaps = 4/585 (0%)
Strand = Plus / Minus
Query: 1 acgaggcagcagctttgtgttgttttggagccctggggcttgtggctctctgttctagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acgaggcagcagctttgtgttgttttggagccctggggcttgtggctctctgttctagca 681
Query: 61 gcaggagatgagcccagacactctgccttggaaacgtccactgtccccttttaaagcagc 120
||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||
Sbjct: 680 gcaggagatgagcccagacactctgcctttgaaatgtccactgtccccctttaaagcagc 621
Query: 121 caccccgctcgctctctgtctgtgaaagaatatgattccacatccatgttctggaaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caccccgctcgctctctgtctgtgaaagaatatgattccacatccatgttctggaaaagc 561
Query: 181 cagttgctggagctgtctgtcctttgaagtctggtagatttccattttattgtagtcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagttgctggagctgtctgtcctttgaagtctggtagatttccattttattgtagtcttt 501
Query: 241 cccagagtgtttgaagaggggagtccttggttataatttaaatttttccagtcagtagta 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 cccagagtgtttgaagaggggagtccttggttataatttaaatttctccagtcagtagta 441
Query: 301 gttctttcaagttccctatccattttacagctagtctttgcattggctctcttttttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttctttcaagttccctatccattttacagctagtctttgcattggctctcttttttaaa 381
Query: 361 aacccacttaatctaggtttgcaaatgcactcacagagttgaaatatgtttaaggtttta 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacccacttaatctaggcttgcaaatgcactcacagagttgaaatatgtttaaggtttta 321
Query: 421 tctctgctatgtcttcaactccatatgtatgtatatgtctctatatacccatatatgtgc 480
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 320 tctctgctatgtcttcaactccat--gt--gtatatgtctctatatacccatatatgtgc 265
Query: 481 gtatgtcattcgaataaaatgattatgtatccttcagtccagtaaggaaaaaatacaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtatgtcattcgaataaaatgattatgtatccttcagtccagtaaggaaaaaatacaact 205
Query: 541 agatgctgtggaagtagctcagtcagtaaagtgcttattttgcag 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agatgctgtggaagtagctcagtcagtaaagtgcttattttgcag 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 983
Length adjustment: 10
Effective length of query: 577
Effective length of database: 973
Effective search space: 561421
Effective search space used: 561421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
