BAC Information

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BAC

Clone NameMSMg01-546D08
Chromosome15 (Build37)
Map Location 102,820,955 - 102,998,592
singlet/doubletdoublet
Overlap geneHoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060
Downstream geneCbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546D08.T7 (MSMg01no546_d08.b1)MSMg01-546D08.TJ (MSMg01no546_d08.g1)
ACCAG611087AG611088
length738836
length of high quality
(start - end)		650 (31 - 680)240 (70 - 309)
definitionCHROMAT_FILE: MSMg01no546_d08.b1 PHD_FILE: MSMg01no546_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:25 2005CHROMAT_FILE: MSMg01no546_d08.g1 PHD_FILE: MSMg01no546_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,820,955 - 102,821,590)(102,998,353 - 102,998,592)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATT
CGCCTGGGCTGTTAGAGGAAAGAGCTAAGTGAGAGCGCGCGCTCTACCTA
CCGACAGTGAGCAGAGAGCTGCAGCCGCCCGAGCCCGCAGCCGGCACCGC
GCCCCCACCTGCCCAGCCCCCAGCCCAGCAGTCCAGCCCGGGGGAGCCGG
CCAGCTTGGGGTTCGGTCCCGGGGGGAGGGGAGTTTCGGGGATACCCGGC
GGGGGAGCGTGATCCAAGGGGAGGGGGCCGCGGGTTTTCATGTACCCAGC
ATGAGCTCCTACTTCGTCAACCCCCTGTTTTCCAAATACAAAGGCGGCGA
GTCCCTGGAACCGGCCTATTACGACTGCCGGTTCCCTCAGAGCGTGGGCA
GAAGCCATGCGCTGGTGTACGGGCCCGGCGGCTCCGCGCCCGGTTTCCAG
CACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCAT
CTCCAACTCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGCCACGGAG
ACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTAT
GGGGCTCAGCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAATCCTC
CGCCAACACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAGAACTCGT
CTCCCAGCCTCATGTTTCCATGGATGAGACCCCACGGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCCAGAGACAATAGTGGTGTGGCAGTGG
AGATGAGAAAGGCCAAATCTGGATGGGGAGGGCTGAGAGGGAGGTGAATC
CGGCTAGAAGCACTTCTGTGGTGCCGGGTGTGGGAGGAGACTCAGTAGAG
ATCAGCGGCTCTTGCTGTCATGCTTAACCCTGTTCTGTAAGCTGTGGAGT
GGATTATAGAGGTGAGGAGAGGATTATTTGTGTGTTCCGGGGTGGGGTGG
GGTGGGGGATNNNNNNNTNNNTNNNNCNNTTNNNTTTTTTCCCTTTTTCT
TCCCTTTTTTTTTCCCTTCCTTTTCTCTTCTCTCTCCCTTTCTTTCTTTT
TCTTCTTTTTCTTTTTCTTTCCCCCCCCTTTCCTTCCCCTTTTCTTTTTT
TCCTCTTCTTCTTTTCTTCTTTTTTTTCTCCTTCCCTCCCTTCCTTCTTT
CTCTTCTCCCTTTTCCTTCTCTTTTTTTCCCTTTCTTCTCCCTTTTTTCT
TCTCTCTTTTCCTCTCTCCCCTTTTCTTTTTTCTCCCTTCTTCTTCCTTT
TTTTTCCCCCTCTTCCCTTTTCTTTTTCTTTTTTCCNCCTTATCTCTTCT
TTTCCTCTCTTTTTTTTTTTTTCCCTCCCTCTATCTTTTTCTTCTCCTTA
TCTTTCCATTCAATCTATTATTACCTTTTCTTCCTTTTCGCCCTTATCTA
TTCTCTTTCCCTCTCTAGTCACTCACTCTCTAGCTGTGTTTCTTCACCCC
CCTCTAATCACTTTTTCCTTTCCTTCTCTTCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_d08.b1 MSMg01no546_d08.b1 CHROMAT_FILE:
MSMg01no546_d08.b1 PHD_FILE: MSMg01no546_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:25 2005
         (650 letters)



>mm_chr15_102820741_102821790
          Length = 1050

 Score = 1230 bits (636), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattcgcctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctaccga 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcgcctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctaccga 274

                                                                       
Query: 75  cagtgagcagagagctgcagccgcccgagcccgcagccggcaccgcgcccccacctgccc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cagtgagcagagagctgcagccgcccgagcccgcagccggcaccgcgcccccacctgccc 334

                                                                       
Query: 135 agcccccagcccagcagtccagcccgggggagccggccagcttggggttcggtcccgggg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agcccccagcccagcagtccagcccgggggagccggccagcttggggttcggtcccgggg 394

                                                                       
Query: 195 ggaggggagtttcggggatacccggcgggggagcgtgatccaaggggagggggccgcggg 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggaggggagtttcggggatacccggcgggggagcgtgatccaaggggagggggccgcggg 454

                                                                       
Query: 255 ttttcatgtacccagcatgagctcctacttcgtcaaccccctgttttccaaatacaaagg 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttttcatgtacccagcatgagctcctacttcgtcaaccccctgttttccaaatacaaagg 514

                                                                       
Query: 315 cggcgagtccctggaaccggcctattacgactgccggttccctcagagcgtgggcagaag 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cggcgagtccctggaaccggcctattacgactgccggttccctcagagcgtgggcagaag 574

                                                                       
Query: 375 ccatgcgctggtgtacgggcccggcggctccgcgcccggtttccagcacgcctcgcacca 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccatgcgctggtgtacgggcccggcggctccgcgcccggtttccagcacgcctcgcacca 634

                                                                       
Query: 435 cgtccaagacttcttccaccacggcacctccggcatctccaactcgggctaccagcagaa 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cgtccaagacttcttccaccacggcacctccggcatctccaactcgggctaccagcagaa 694

                                                                       
Query: 495 cccatgctcgctgagctgccacggagacgcctccaaattctatggctacgaggcgctccc 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cccatgctcgctgagctgccacggagacgcctccaaattctatggctacgaggcgctccc 754

                                                                       
Query: 555 cagacagtccctttatggggctcagcaagaggcgagcgtggtgcaatatcccgactgtaa 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagacagtccctttatggggctcagcaagaggcgagcgtggtgcaatatcccgactgtaa 814

                                               
Query: 615 atcctccgccaacactaacagtagcgaaggacaagg 650
           ||||||||||||||||||||||||||||||||||||
Sbjct: 815 atcctccgccaacactaacagtagcgaaggacaagg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_d08.g1 MSMg01no546_d08.g1 CHROMAT_FILE:
MSMg01no546_d08.g1 PHD_FILE: MSMg01no546_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:25 2005
         (240 letters)



>mm_chr15_102998153_102998792
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagagacaatagtggtgtggcagtggagatgagaaaggccaaatctggatgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caggccagagacaatagtggtgtggcagtggagatgagaaaggccaaatctggatgggga 381

                                                                       
Query: 61  gggctgagagggaggtgaatccggctagaagcacttctgtggtgccgggtgtgggaggag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggctgagagggaggtgaatccagctagaagcacttctgtggtgccgggtgtgggaggag 321

                                                                       
Query: 121 actcagtagagatcagcggctcttgctgtcatgcttaaccctgttctgtaagctgtggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actcagtagagatcagcggctcttgctgtcatgcttaaccctgttctgtaagctgtggag 261

                                                                       
Query: 181 tggattatagaggtgaggagaggattatttgtgtgttccggggtggggtggggtggggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggattatagaggtgaggagaggattatttgtgtgttccggggtggggtggggtggggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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