Query= MSMg01no547_f12.b1 MSMg01no547_f12.b1 CHROMAT_FILE:
MSMg01no547_f12.b1 PHD_FILE: MSMg01no547_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:57 2005
(281 letters)
>mm_chr15_76474701_76475381
Length = 681
Score = 493 bits (255), Expect = e-144
Identities = 268/277 (96%), Gaps = 8/277 (2%)
Strand = Plus / Minus
Query: 5 ggaattctcttctgcagatacggcttctgcctactacaaaggagcccatgccagagtcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggaattctcttctgcagatacggcttctgcctactacaaaggagcccatgccagagtcag 372
Query: 65 cacatccatgaatgcagtggccttcgattccgaaatggctcctcgatgtcctctgccctt 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 371 cacatccatgaatgcagtggccttcgattccgatatggctcctcgatgtcctctgccctt 312
Query: 125 agggacagaggacctttggaaaacaggctcctctgggagtccctctagattccaaggtga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agggacagaggacctttggaaaacaggctcctctgggagtccctctagattccaaggtga 252
Query: 185 tggtgtaaaaaagtagggcagggctagcttgccctaataacccatgtctggatgtgcgag 244
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 251 tggtgtaaaaaagtagggcagggctagcttgccctaataaccc--------atgtgcgag 200
Query: 245 cgaccgactcctagaaagcagcctgaaggtctctcag 281
|||||||||||||||||||||||||||||||||||||
Sbjct: 199 cgaccgactcctagaaagcagcctgaaggtctctcag 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no547_f12.g1 MSMg01no547_f12.g1 CHROMAT_FILE:
MSMg01no547_f12.g1 PHD_FILE: MSMg01no547_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:57 2005
(355 letters)
>mm_chr15_76266986_76267740
Length = 755
Score = 640 bits (331), Expect = 0.0
Identities = 349/355 (98%)
Strand = Plus / Plus
Query: 1 tcttttgtaaccctgtctatgaacaattatcttcttcgtatggtgagggtttctggcaga 60
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 201 tcttttgtaaccctgtctatgaacatttatcttcttcatatggtgagggtttctggcaga 260
Query: 61 ggctgataggaagggcccctgggccctttctagtaacgctcagtgctaggtggatgggtc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggctgataggaagggcccctgggccctttctagtaacgctcagtgctaggcggatgggtc 320
Query: 121 aggagggcccgggctctgtagtttgggcttggtatcatgatgctcttccttctggtgtat 180
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 321 aggagggcccgggctctgtagttggggcttggtaccatgatgctcttccttctggtgtat 380
Query: 181 ttccagtgctgggagagaaagaagaggaggcggagctggagggtggaagaggcggagctg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttccagtgctgggagagaaagaagaggaggcggagctggagggtggaggaggcggagctg 440
Query: 241 gagggtggggaagctgcagacctgtcctgaaatccctgtattctagaaagttccagagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggtggggaagctgcagacctgtcctgaaatccctgtattctagaaagttccagagca 500
Query: 301 gctccacacaggtcactctgctgtcccctgtgtgatccctgccctgcagctgcac 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctccacacaggtcactctgctgtcccctgtgtgatccctgccctgcagctgcac 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
