BAC Information

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BAC

Clone NameMSMg01-547H22
Chromosome15 (Build37)
Map Location 101,541,067 - 101,541,621
singlet/doubletsinglet
Overlap geneKrt5
Upstream geneGalnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a
Downstream geneKrt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547H22.T7 (MSMg01no547_h22.b1)MSMg01-547H22.TJ (MSMg01no547_h22.g1)
ACCAG612071AG612072
length764757
length of high quality
(start - end)		565 (41 - 605)559 (70 - 628)
definitionCHROMAT_FILE: MSMg01no547_h22.b1 PHD_FILE: MSMg01no547_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:08 2005CHROMAT_FILE: MSMg01no547_h22.g1 PHD_FILE: MSMg01no547_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGCTCTGAGCCCCATTTTTGAAGGGGGTTATTTGATTTTCTGG
AGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTATTTG
TCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTTAAT
CCTTGATCTTACAGCACATGCCATTGCTGTTCTATTCAGGAATTTTTCTC
CTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTC
AGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTT
AGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTACATGATAACA
ACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGG
ATGGTTTTAGCTCCCTTGTCCAAGATCAAGTGACCATAGGTGTGTGGGTT
TATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTTGCTAT
ACCAGTACCATGCAGTTTTTTATCACAATTGCTCTGTAGTACAGCTTTAG
GTCAGGCATGGTGATTCTACCAGAGGTTCTTTTATCTTTGAGAAGAGTTT
TTGATATCCTAGGNTTTTTTGTCATTCCAGATGAATTTTGCAAATTCCCC
TTTCTACTCTGTGN

CATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTAGCTGCATAAATCAGATACTGATTAAA
GGGGCTGCCAGTGTTTTGTTTCTTGGCTTATGCATTTGACGGTGCTGGAG
AGCAAACTCAGGAATGTGTGCATGCTAAGCAAGTGCTCTCCCACAAGCTA
CACCTCTACTCCTGCAGGATTATGGGTGAAACAGGAGAATAGCAATGATG
CTGGAATGAGGTTTTGGCAGGCAGCTTCAGAAAAGGCAGCATAGTACTGG
GGCTGGGGGCTTGCCCGGGGCTCAGGGTGTCCCATACTTGTCTGCCTATG
AGATGTGAGCAGCCTCTTTCTAGTGTGAACGCTTGCTCACAGTGACTGCA
CAGATACCCTTTTCTGACCCTTGTCCTCTGACTCATCCTTCCTGTCCCTT
TGACCACCAGGTATGAGGATGAGATCAACAAGCGTACCACGGCTGAGAAT
GAGTTTGTGATGTTGAAGAAGGTGGGTGTGGCAAAGGGAAAGCAGCAGCC
CTGGGCTGTGCTCTCCTGGAGGCGGAGCCATTTGAGGTAGGTGCATGTCG
GTCCATGCCAACCATCTATCTGTGTTCCTTAGGATGTGGATGCTGCCTAC
ATGAACAAGGTGGAGCTGGAGGCCAGGGTCGATGCCCTGATGGACGAGAT
CAACTTCATGAAGATGTTCTTTGATGCGGTGAGCAATTAACCCAAATTTT
CTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_h22.g1 MSMg01no547_h22.g1 CHROMAT_FILE:
MSMg01no547_h22.g1 PHD_FILE: MSMg01no547_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:09 2005
         (559 letters)



>mm_chr15_101540731_101541689
          Length = 959

 Score =  994 bits (514), Expect = 0.0
 Identities = 547/560 (97%), Gaps = 6/560 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttagctgcataaatcagatactgattaaaggggctgccagtgttttgtttcttggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ctttagctgcataaatcagatactgattaaaggggctgccagtgttttgtttcttggctt 832

                                                                       
Query: 61  atgcatttgacggtgctggagagcaaactcaggaatgtgtgcatgctaagcaagtgctct 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 831 atgcatttgacggtgctggagagcgaactcaggaatgtgtgcatgctaagcaagtgctct 772

                                                                       
Query: 121 cccacaagctacacctctactcctgcaggattatgggtgaaacaggagaatagcaatgat 180
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 771 cccacaagctatacctctactcatgcaggattatgggtgaaacaggagaatagcaatgat 712

                                                                       
Query: 181 gctggaatgaggttttggcaggcagcttcagaaaaggcagcatagtact-ggggctgggg 239
           |||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||
Sbjct: 711 gctggaatgaggttttggcaggcaacttcagaaaaggcagcatatta-tgggggctgggg 653

                                                                       
Query: 240 gcttgcccggggctcagggtgtcccatacttgtctgcctatgagatgtgagcagcctctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcttgcccggggctcagggtgtcccatacttgtctgcctatgagatgtgagcagcctctt 593

                                                                       
Query: 300 tctagtgtgaacgcttgctcacagtgactgcacagatacccttttctgacccttgtcctc 359
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctagtgtgaatgcttgctcacagtgactgcacagatacccttttctgacccttgtcctc 533

                                                                       
Query: 360 tgactcatccttcctgtccctttgaccaccaggtatgaggatgagatcaacaagcgtacc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgactcatccttcctgtccctttgaccaccaggtatgaggatgagatcaacaagcgtacc 473

                                                                       
Query: 420 acggctgagaatgagtttgtgatgttgaagaaggtgggtgtggcaaagggaaagcagcag 479
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 472 acggctgagaatgagtttgtgatgttgaagaaggtgggtgtggcgaagggaaagcagcag 413

                                                                       
Query: 480 ccctgggctgtgctctcctggaggcggagccatttgaggtaggtgcatgtcggtccatgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccctgggctgtgctctcctggaggcggagccatttgaggtaggtgcatgtcggtccatgc 353

                               
Query: 540 caaccatctatctgtgttcc 559
           |||||    |||||||||||
Sbjct: 352 caacc----atctgtgttcc 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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