BAC Information

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BAC

Clone NameMSMg01-548G01
Chromosome15 (Build37)
Map Location 34,867,268 - 34,867,563
singlet/doubletsinglet
Overlap geneStk3
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2
Downstream geneOsr2, Vps13b, EG666183, Cox6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548G01.T7 (MSMg01no548_g01.b1)MSMg01-548G01.TJ (MSMg01no548_g01.g1)
ACCAG612738AG612739
length778777
length of high quality
(start - end)
300 (47 - 346)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no548_g01.b1 PHD_FILE: MSMg01no548_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:17 2005CHROMAT_FILE: MSMg01no548_g01.g1 PHD_FILE: MSMg01no548_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGGTAATATAAAAATCATTGGAGTAAAATTTTGCTTTAGCAA
GTTTTAAATAATTTGTTACTTTTGCAAAAATTATCTGGAAAAGTTTTTTT
CCAAATAAAATTACAATTACTTATATTTATTAATAAGCATAATACTTCAT
AGACAAATAGATACATATCTTAAAATTTCAAGTAGTATTAACTTATTTTT
CTTAGATATGATAAAGTTTTGGGATTATAATTATTTTAAAGTAAAAACTT
TTTTTTAAAAATCACCTTTATTTGTTGTGTGTGTGTGTGTGTGTGAGTGT
GTGTGTGTGTGTCTGTGTGTGTTTAGAAATCAGAAGATGATATTCAGTTC
TCACTTCAACCATATGACTTCCAGGTTTGTACTTGGGTCATTGGACTTAG
TGTCCAGTGTCTTTTCCTACTGAGCCACTTTGCTGATTCTGTTATTAAAA
TAGTATTAATTTTGAATACCTTTTCCCTCAATGGACTTAGATACCAGAAT
TTCTTTTGCTACAAGAGAGACTAAAATTTTAGAAATCCTCTCCTTCAATA
AAAGCGAGGTATTAGTTACTTTGTAAAATATTAAAAATGTTGAGACATAA
AGTATTACATTTGAAAAAAAAGTGGAATTATTCCGCCTTAATGTATTTTT
TTCATTGGCCCGAAATATCTTTTATATAAATTTACATCTTGGCCTAAAAC
GTCCAAGAACTTTGTTTAAAACTTTTCT
CTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTTTCCAATGTATATCCCCTTGAT
CTCCTTTTGTTGTCTAATTGCTCTGGCTAGGACTTCAAGTACTATATTGA
ATAGGTAGGGAGAGCGTGGACAGTGTTGTCTAGTCCCCAATTTTAGTGGG
ATTGCTTCAAGTTTCTCTCTATTTAGTTTGATGTTGGCTACTGGTTTGCT
CTATATTGCTTTTATTATGTTTAGGTATGGGCCTTGAGTTCCTGATCTTT
CCGAGACTTTTAACATGAATGGATGCTGAATTTTGTCAAATGATTTTTCA
GCATCTAATGAAATGATCATGCAGTTTTTTCCTCTGAGTTTGTTTATATA
ATGGATTACCTTAATGGATTTCCGTATATTGAACCATCCCTGCATCCCTG
GGATGAAGCCTACTTGGTCATGATGGATGATTGTCTTGATGTGTTCTTGG
ACTCAGTTTGCGAGGATTTTATTGGGTATTTTTGCATCAATATTCATAAG
TCAAATTGCGCTTGAAGTTTTCTTTCTCTTTGGGACCTTGGGGTGTGTTT
AGGGATCATAATTAATTGTGGGCATTTATACAATTGAATTGGGTTAAAAG
AAACCTTTCCTGGTTTCTAATTTTTGGTGGAAATAGCTTTGAAGGAAAAA
ATTTGGGAAATTAAGGTTCCTTTCTTTTGGTAATTGGTCCTGTGATAACA
ATACTCCCCGCCAATCTATAAACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_g01.b1 MSMg01no548_g01.b1 CHROMAT_FILE:
MSMg01no548_g01.b1 PHD_FILE: MSMg01no548_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:17 2005
         (300 letters)



>mm_chr15_34867137_34867836
          Length = 700

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggtaatataaaaatcattggagtaaaattttgctttagcaagttttaaata 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattctttggtaaaataaaaatcattggagtaaaattttgctttagcaagttttaaata 368

                                                                       
Query: 65  atttgttacttttgcaaaaattatctggaaaagtttttttccaaataaaattacaattac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atttgttacttttgcaaaaattatctggaaaagtttttttccaaataaaattacaattac 308

                                                                       
Query: 125 ttatatttattaataagcataatacttcatagacaaatagatacatatcttaaaatttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttatatttattaataagcataatacttcatagacaaatagatacatatcttaaaatttca 248

                                                                       
Query: 185 agtagtattaacttatttttcttagatatgataaagttttgggattataattattttaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agtagtattaacttatttttcttagatatgataaagttttgggattataattattttaaa 188

                                                                   
Query: 245 gtaaaaacttttttttaaaaatcacctttatttgt-tgtgtgtgtgtgtgtgtgtg 299
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 187 gtaaaaactttttttaaaaaatcacctttatttgtgtgtgtgtgtgtgtgtgtgtg 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)