BAC Information

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BAC

Clone NameB6Ng01-001B17
Chromosome16 (Build37)
Map Location 32,560,083 - 32,704,802
singlet/doubletdoublet
Overlap geneLOC385820, Tfrc, Tnk2, ENSMUSG00000075265
Upstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
Downstream geneLOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001B17.bB6Ng01-001B17.g
ACCDH839520DH839521
length1,052285
definitionDH839520|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B17, 5' end.DH839521|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,560,083 - 32,561,138)(32,704,518 - 32,704,802)
sequence
gaattcattatctctagaactaacagagatccacctgcctctgtccctca
agtgctgagattaaaggtgtgcaccaccattgccctgccactagccacat
ttgaaaggcccatagaagttgttgaaaccaaaatctcttgccatatgctt
ggggatactgtggcacagacagaagtatctttctatcacataaactgttg
ctatgacaacagtaagacctcagcccttgttcctcgacgccttcccttcc
cctataatggctgcagctttagaacttgagctgggcccaagccaacctgt
ttattgggggccagatggatttatcacagaggtaagcaaggtctcccaag
atcaagcaagaacaaccacacttccagatattcactcacttatttattat
ttacaccacacccacttccaaacacaagtgtttgaggtggctcaccataa
aagccacaggaatagcagaactattcaaaagtaattaactgtctacaagg
ctcaagactttcatgatttcagagtccggtggaaatttttctgttaagga
aaaaggaggtttttgctttgttttgagacaaaatgtaccctaggttgacc
tcaaacttgagcttctcctgactcagccttctacacactggggtctatag
gcttgtgctaccatgactggctaagagaagcctttgatctcagggactca
aacaagttttagtgttcaagagcactgaagggtttgagagcagttgaagt
attccaagtaactaaaatgagggtgctggcagagtggagccatgggcacc
aaaggtaagaagagaaaaatccaagaccaagtgtatgaattcatacacca
cactcacttacccccttagcccatcttctgttgctgtaacagagtgtctg
agactggggtgctaataaaggaaagaggtctagcaaggtatagtggttac
aggcttgtaagtccagtgctcagagctaaggcagagaattcagagttcaa
caggaccattaacaacatcacagtgtgtgtaggaggagtggccggggggg
gg
caaatggagatgtgaaatgggggcggggggggggactctataatcattaa
agaaaatgaaatcagatcgttttctctggagttttcatggaagctgtgga
ctgtattctccaaaaaaaagttttaatatgctgtggtttggttttgtgga
cgtcaaatcgcctgaagctaacatatgttgtaagcaactgggaactaaac
ctgggttccctgtaagagaagccaggacacttaaccacctctccaatcct
gtctttggtttttgtttggttggttggttgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_32560083_32561138
seq2: B6Ng01-001B17.b_42_1093

seq1  GAATTCATTATCTCTAGAACTAACAGAGATCCACCTGCCTCTGTCCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTCTAGAACTAACAGAGATCCACCTGCCTCTGTCCCTCA  50

seq1  AGTGCTGAGATTAAAGGTGTGCACCACCATTGCCCTGCCACTAGCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGATTAAAGGTGTGCACCACCATTGCCCTGCCACTAGCCACAT  100

seq1  TTGAAAGGCCCATAGAAGTTGTTGAAACCAAAATCTCTTGCCATATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGCCCATAGAAGTTGTTGAAACCAAAATCTCTTGCCATATGCTT  150

seq1  GGGGATACTGTGGCACAGACAGAAGTATCTTTCTATCACATAAACTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATACTGTGGCACAGACAGAAGTATCTTTCTATCACATAAACTGTTG  200

seq1  CTATGACAACAGTAAGACCTCAGCCCTTGTTCCTCGACGCCTTCCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAACAGTAAGACCTCAGCCCTTGTTCCTCGACGCCTTCCCTTCC  250

seq1  CCTATAATGGCTGCAGCTTTAGAACTTGAGCTGGGCCCAAGCCAACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATGGCTGCAGCTTTAGAACTTGAGCTGGGCCCAAGCCAACCTGT  300

seq1  TTATTGGGGGCCAGATGGATTTATCACAGAGGTAAGCAAGGTCTCCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGGGGCCAGATGGATTTATCACAGAGGTAAGCAAGGTCTCCCAAG  350

seq1  ATCAAGCAAGAACAACCACACTTCCAGATATTCACTCACTTATTTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCAAGAACAACCACACTTCCAGATATTCACTCACTTATTTATTAT  400

seq1  TTACACCACACCCACTTCCAAACACAAGTGTTTGAGGTGGCTCACCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCACACCCACTTCCAAACACAAGTGTTTGAGGTGGCTCACCATAA  450

seq1  AAGCCACAGGAATAGCAGAACTATTCAAAAGTAATTAACTGTCTACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGGAATAGCAGAACTATTCAAAAGTAATTAACTGTCTACAAGG  500

seq1  CTCAAGACTTTCATGATTTCAGAGTCCGGTGGAAATTTTTCTGTTAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGACTTTCATGATTTCAGAGTCCGGTGGAAATTTTTCTGTTAAGGA  550

seq1  AAAAGGAGGTTTTTGCTTTGTTTTGAGACAAAATGTACCCTAGGTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGTTTTTGCTTTGTTTTGAGACAAAATGTACCCTAGGTTGACC  600

seq1  TCAAACTTGAGCTTCTCCTGACTCAGCCTTCTACACACTGGGGTCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTGAGCTTCTCCTGACTCAGCCTTCTACACACTGGGGTCTATAG  650

seq1  GCTTGTGCTACCATGACTGGCTAAGAGAAGCCTTTGATCTCAGGGACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTACCATGACTGGCTAAGAGAAGCCTTTGATCTCAGGGACTCA  700

seq1  AACAAGTTTTAGTGTTCAAGAGCACTGAAGGGTTTGAGAGCAGTTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTTTAGTGTTCAAGAGCACTGAAGGGTTTGAGAGCAGTTGAAGT  750

seq1  ATTCCAAGTAACTAAAATGAGGGTGCTGGCAGAGTGGAGCCATGGGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGTAACTAAAATGAGGGTGCTGGCAGAGTGGAGCCATGGGCACC  800

seq1  AAAGGTAAGAAGAGAAAAATCCAAGACCAAGTGTATGAATTCATACACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAGAAGAGAAAAATCCAAGACCAAGTGTATGAATTCATACACCA  850

seq1  CACTCACTTACCCCCTTAGCCCATCTTCTGTTGCTGTAACAGAGTGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTTACCCCCTTAGCCCATCTTCTGTTGCTGTAACAGAGTGTCTG  900

seq1  AGACTGGGGTGCTAATAAAGGAAAGAGGTCTAGCAGGGTATAGTGG-TAC  949
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AGACTGGGGTGCTAATAAAGGAAAGAGGTCTAGCAAGGTATAGTGGTTAC  950

seq1  AGGCCTGTAAGTCCAGTGCTCAAGAAGCTAAAGCAGAGAAATCAGAAGTT  999
      |||| |||||||||||||||||   |||||| |||||||| |||| ||||
seq2  AGGCTTGTAAGTCCAGTGCTCA--GAGCTAAGGCAGAGAATTCAG-AGTT  997

seq1  CAACAAGACCATTAAACAACAACAACAGTGTGTGTAGGAGGAGTGGCGGG  1049
      ||||| ||||||| ||||||| | ||||||||||||||||||||||| ||
seq2  CAACAGGACCATT-AACAACATC-ACAGTGTGTGTAGGAGGAGTGGCCGG  1045

seq1  GGGGGGG  1056
      |||||||
seq2  GGGGGGG  1052

seq1: chr16_32704518_32704802
seq2: B6Ng01-001B17.g_72_356 (reverse)

seq1  ACCCCCAACCAACCAACCAAACAAAAACCAAAGACAGGATTGGAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAACCAACCAACCAAACAAAAACCAAAGACAGGATTGGAGAGGTG  50

seq1  GTTAAGTGTCCTGGCTTCTCTTACAGGGAACCCAGGTTTAGTTCCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGTCCTGGCTTCTCTTACAGGGAACCCAGGTTTAGTTCCCAGTT  100

seq1  GCTTACAACATATGTTAGCTTCAGGCGATTTGACGTCCACAAAACCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAACATATGTTAGCTTCAGGCGATTTGACGTCCACAAAACCAAAC  150

seq1  CACAGCATATTAAAACTTTTTTTTGGAGAATACAGTCCACAGCTTCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATATTAAAACTTTTTTTTGGAGAATACAGTCCACAGCTTCCATG  200

seq1  AAAACTCCAGAGAAAACGATCTGATTTCATTTTCTTTGATGATTATAGAG  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAACTCCAGAGAAAACGATCTGATTTCATTTTCTTTAATGATTATAGAG  250

seq1  TCCCCCCCCCCGCCCCCATTTCACATCTCCATTTG  285
      |||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCGCCCCCATTTCACATCTCCATTTG  285