BAC Information

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BAC

Clone NameB6Ng01-001C22
Chromosome16 (Build37)
Map Location 71,995,801 - 72,136,671
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C22.bB6Ng01-001C22.g
ACCDH839576DH839577
length4701,132
definitionDH839576|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C22, 5' end.DH839577|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,995,801 - 71,996,275)(72,135,530 - 72,136,671)
sequence
tctcagaaaagtactccaactctaaccccacagaacaatgcttaccatag
aaggtgataccatttatctctaagttttactatatcattctataaatttc
tattgtatttgtaatttttcatggactcctcctttttgtcctctagtttg
tctcctctttatattcctccagctcaggttcaaatattgtttagtgcaag
ggagagagagggggggagagagagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagatagagaggagagagagagg
agagagaatgagagagagaaataggaagagagggaaaggaaggatggaat
gtggaaaggaaagaaggaaggaaggaaggaagcttgattattctctgagc
ttcaacaaagatcttttttggggctggaattttcccctacctgatctgga
acagatacaatgcctgcaac
gaattctctgcccaattgaccttcaatcatactgttcatttcatcattgt
gatgagaattagtggaacacatgatgtttgggcatcctagctgaaagcac
acagagttgcagacagatctttctgaacaatgtcatccttcaactatcac
gccgtggaaacacacgttaacagcctccctgttctcataaggcttgtctc
agataagtgagatttctttcaacgcagaaaaaaaaaatgaatgaaagaag
tcctaccattttctctaatgtgacacatagaactggttgacctaacatct
tgaaaaggagatcagtgtaagaattaacagtgagaaaaaaaatacagagc
agggaaagtggacagagatgggacagtgggtccaataattattgaatttg
acagtttaacattgtctacagcaagtgagggttccttgcacagtcttcct
gcataatctctgctttcagaagataccatgagactctttctcttgtgctg
aacatgatgggggaaaaagattgtcttttgacgttactgtttattctcag
actaaaagcccaactcaagtcaggtaagtggaaagttaaagtggaaacaa
tctgtgatatgtccacatgcctgtgtataggaatgtctgaagagatttta
gaatgaaagaatgtattcaagagacatgatttttaaataggaatgcatca
tttcaaacatagcacagaacaatattatcaacaaaatatatactaagatg
gccaggcctatatgtttgtccttttccatttgtttgtctaaattttttga
cagtcttttgagtagccatcatgcagtgtgaaaatgaggtgggaggcagc
taacacagataaagtaaaggatgggaacaagaagctaatgcagattttcc
acgacagtgcaggcgctatccaaaataagttaaatatgaaaagctgatgt
ttttctgcatagattagaaagattttctatgaagatattcaaatgatata
gaactaaataagtggtttctgaaatactgaaaagtgttctattatcaatg
caatatttgaaatgattggagaatagtagttatgggatgagtcgttcaaa
cgtttaatattgtggaagtaggattcttatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71995801_71996275
seq2: B6Ng01-001C22.b_46_520

seq1  GAATTCTCTCAGAAAAGTACTCCAACTCTAACCCCACAGAACAATGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGAAAAGTACTCCAACTCTAACCCCACAGAACAATGCTTA  50

seq1  CCATAGAAGGTGATACCATTTATCTCTAAGTTTTACTATATCATTCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAGGTGATACCATTTATCTCTAAGTTTTACTATATCATTCTATA  100

seq1  AATTTCTATTGTATTTGTAATTTTTCATGGACTCCTCCTTTTTGTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATTGTATTTGTAATTTTTCATGGACTCCTCCTTTTTGTCCTCT  150

seq1  AGTTTGTCTCCTCTTTATATTCCTCCAGCTCAGGTTCAAATATTGTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCTCCTCTTTATATTCCTCCAGCTCAGGTTCAAATATTGTTTAG  200

seq1  TGCAAGGGAGAGAGAGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGAGAGAGAGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGA  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGGAGAGA  300

seq1  GAGAGGAGAGAGAATGAGAGAGAGAAATAGGAAGAGAGGGAAAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGAGAATGAGAGAGAGAAATAGGAAGAGAGGGAAAGGAAGGA  350

seq1  GGGAAGGAGGAAAGGAAAGAAGGAAGGAAGGAAGGAAGCTTGAAGATTCT  400
       |||| | |||||||||||||||||||||||||||||||||||  |||||
seq2  TGGAATGTGGAAAGGAAAGAAGGAAGGAAGGAAGGAAGCTTGATTATTCT  400

seq1  CTGAGCTTTAACAAAGAACTTTATTTGTGCTGGAATTTTGCCCTACCTGA  450
      |||||||| |||||||| |||| || | ||||||||||| ||||||||||
seq2  CTGAGCTTCAACAAAGATCTTTTTTGGGGCTGGAATTTTCCCCTACCTGA  450

seq1  TCTGTTACAGATACAATGCTTGCAA  475
      ||||  ||||||||||||| |||||
seq2  TCTGGAACAGATACAATGCCTGCAA  475

seq1: chr16_72135530_72136671
seq2: B6Ng01-001C22.g_65_1196 (reverse)

seq1  GTAT-AGAATTCCCTACTTTTCCAACAATATTTAAACGTTTGGACGGACT  49
      |||| |||||  |||||||   | |||||| ||||||||||| || ||||
seq2  GTATAAGAAT--CCTACTT---CCACAATA-TTAAACGTTTGAAC-GACT  43

seq1  CAATCCATAACTACTATTCTCAGACCCATTTCAAATATTTGCATTGATAA  99
      ||  |||||||||||||||||  |  ||||||||||| ||||||||||||
seq2  CATCCCATAACTACTATTCTC-CAATCATTTCAAATA-TTGCATTGATAA  91

seq1  TAG-ACACTTTTCAGTATTTCAGAAACCACTTATTTAGTTCTATATCATT  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACTTTTCAGTATTTCAGAAACCACTTATTTAGTTCTATATCATT  141

seq1  TGAATATCTTCATAGAAAATCTTTTCTAATCTATTGCAGAAAAACCTTCA  198
      ||||||||||||||||||||| ||||||||||| |||||||||| | |||
seq2  TGAATATCTTCATAGAAAATC-TTTCTAATCTA-TGCAGAAAAA-CATCA  188

seq1  GCTTTTCATATTTAACTTATTTTGGATAGCGCCCTGCACTGTCGTGGAAA  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTTTCATATTTAACTTATTTTGGATAGCG-CCTGCACTGTCGTGGAAA  237

seq1  ATCTGCATTAGCTTCTTGTTCCCATCC-TTACTTTATCTGTGTTAGCTGC  297
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCTGCATTAGCTTCTTGTTCCCATCCTTTACTTTATCTGTGTTAGCTGC  287

seq1  CTCCCACCTCATTTTCACACTGCATGATGGCTACTCAAAAGACTGTCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTCATTTTCACACTGCATGATGGCTACTCAAAAGACTGTCAAA  337

seq1  AAATTTAGACAAACAAATGGAAAAGGACAAACATATAGGCCTGGCCATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGACAAACAAATGGAAAAGGACAAACATATAGGCCTGGCCATCT  387

seq1  TAGTATATATTTTGTTGATAATATTGTTCTGTGCTATGTTTGAAATGATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATATTTTGTTGATAATATTGTTCTGTGCTATGTTTGAAATGATG  437

seq1  CATTCCTATTTAAAAATCATGTCTCTTGAATACATTCTTTCATTCTAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTATTTAAAAATCATGTCTCTTGAATACATTCTTTCATTCTAAAA  487

seq1  TCTCTTCAGACATTCCTATACACAGGCATGTGGACATATCACAGATTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGACATTCCTATACACAGGCATGTGGACATATCACAGATTGTT  537

seq1  TCCACTTTAACTTTCCACTTACCTGACTTGAGTTGGGCTTTTAGTCTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTAACTTTCCACTTACCTGACTTGAGTTGGGCTTTTAGTCTGAG  587

seq1  AATAAACAGTAACGTCAAAAGACAATCTTTTTCCCCCATCATGTTCAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGTAACGTCAAAAGACAATCTTTTTCCCCCATCATGTTCAGCA  637

seq1  CAAGAGAAAGAGTCTCATGGTATCTTCTGAAAGCAGAGATTATGCAGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAAGAGTCTCATGGTATCTTCTGAAAGCAGAGATTATGCAGGAA  687

seq1  GACTGTGCAAGGAACCCTCACTTGCTGTAGACAATGTTAAACTGTCAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCAAGGAACCCTCACTTGCTGTAGACAATGTTAAACTGTCAAAT  737

seq1  TCAATAATTATTGGACCCACTGTCCCATCTCTGTCCACTTTCCCTGCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATTATTGGACCCACTGTCCCATCTCTGTCCACTTTCCCTGCTCT  787

seq1  GTATTTTTTTTCTCACTGTTAATTCTTACACTGATCTCCTTTTCAAGATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTTCTCACTGTTAATTCTTACACTGATCTCCTTTTCAAGATG  837

seq1  TTAGGTCAACCAGTTCTATGTGTCACATTAGAGAAAATGGTAGGACTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCAACCAGTTCTATGTGTCACATTAGAGAAAATGGTAGGACTTCT  887

seq1  TTCATTCATTTTTTTTTTCTGCGTTGAAAGAAATCTCACTTATCTGAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTTTTTTTTTCTGCGTTGAAAGAAATCTCACTTATCTGAGAC  937

seq1  AAGCCTTATGAGAACAGGGAGGCTGTTAACGTGTGTTTCCACGGCGTGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTATGAGAACAGGGAGGCTGTTAACGTGTGTTTCCACGGCGTGAT  987

seq1  AGTTGAAGGATGACATTGTTCAGAAAGATCTGTCTGCAACTCTGTGTGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGGATGACATTGTTCAGAAAGATCTGTCTGCAACTCTGTGTGCT  1037

seq1  TTCAGCTAGGATGCCCAAACATCATGTGTTCCACTAATTCTCATCACAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAGGATGCCCAAACATCATGTGTTCCACTAATTCTCATCACAAT  1087

seq1  GATGAAATGAACAGTATGATTGAAGGTCAATTGGGCAGAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATGAACAGTATGATTGAAGGTCAATTGGGCAGAGAATTC  1132