BAC Information

Click to search

BAC

Clone NameB6Ng01-001P05
Chromosome16 (Build37)
Map Location 70,181,741 - 70,289,446
singlet/doubletdoublet
Overlap geneEG664930
Upstream geneSpeer2
Downstream geneGbe1, D16Ertd519e, LOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P05.bB6Ng01-001P05.g
ACCDH840120DH840121
length4771,195
definitionDH840120|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P05, 5' end.DH840121|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,288,964 - 70,289,446)(70,181,741 - 70,182,931)
sequence
agataacgacagtaccattgtcaattccagtgtattataagaataaaata
tgagaatgtgtataagatacatttttatagcaataatttgcaaagtttaa
ggctggcatgatgggacacacttgtgattccagagctggagaagtttgag
aataggatcagattatcctgtattcaaacacagactggactatatagcaa
gagtctatcttaacaaatatataagattctgcattttaaagaaaatgtaa
ggatcatttctttacatcataattttatttttcatttcctcaacatttaa
aacattgctacaactattttacttttcattccctatgaaataattcaaaa
cagcaaaataattaatgcaaatattgttcaattctgcatctttgatatag
atatatatatatatatatacatatatatgatatatatgtgatgtatatga
tatattatatatggtatatggtaggtg
gaattcttcctcatgcaagtgaaagaactctagcactctggccctgtcta
cactcatcccagtagcccctactccaccacccccacccccaggtttaaag
agcctttgtccccctcctcccaataaaccgaagcaactctccaaagctgt
ttgcaggtgtattctttgcccacgcactcaccacagaccaagatcctgcc
tgcacccacatacctgactaagctaaacttctctccctccactccagcct
ggtctgcaacaggccagataccgcgagggagaaacagacacagacctgca
gtttgtggcttttatttgccacagggccactcatccagaaagtaggaatg
acagcaggttttcaaaggggttcaaagagttgatagaactattcctgatg
gatgggctaaaaaagagctcaatggtggaacactgtccgtttttatatag
gcaggttttttttaaaaacagtgtacttttcttctactatttggtatttt
taaagtcagggttggaaaacgagcaaagtgggctgcagagatggctccgt
ggataaaatgttttctgtgcaggcgtgagaaccagattgagagtccccag
agtcagcggcaacacgaattgccatcctggcatacctgtggtgagaagaa
aaggagctagagaaatctccggaatctgacgggccacttagtgtggcaca
gagaggtgaccaacaagtgaccctacctccaacaaagtggaaagcgagga
ccgaaaactgaaattgttctctgcgcaccacacactcacagcggcatgta
attattcttaaacacacacaccgtcacacgcatacacatgcatgtacaca
tacacacgggcacacgcatgcacatgcacgtacacatacacgcgcacgtg
tgcgggcgtgtgtgcgttcacaaatacacacatagaccgtaaacaaacat
gaatgaaaatgtttattaaaaaaaaataatatgcttgacgcaactctttc
cttggggttaacagcattcaacctatcaattcccgaggcattagattggc
aaggaatgcaaaggaagaaacgagacaacttccagtcatcccctgcatct
ttcttgcgaatgactcgatctggggaaacatttcttttgtttcaaaccaa
cgagacataccagaattacatttcggaattccttatcgtattcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_70288964_70289446
seq2: B6Ng01-001P05.b_43_525 (reverse)

seq1  CACATACCATATACCATATATAATATATCATATACATCACATATATATCA  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCATATACCATATATAATATATCATATACATCACATATATATCA  50

seq1  TATATATGTATATATATATATATATATCTATATCAAAGATGCAGAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATATATATATATATATATCTATATCAAAGATGCAGAATTGA  100

seq1  ACAATATTTGCATTAATTATTTTGCTGTTTTGAATTATTTCATAGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTGCATTAATTATTTTGCTGTTTTGAATTATTTCATAGGGAAT  150

seq1  GAAAAGTAAAATAGTTGTAGCAATGTTTTAAATGTTGAGGAAATGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAAAATAGTTGTAGCAATGTTTTAAATGTTGAGGAAATGAAAAA  200

seq1  TAAAATTATGATGTAAAGAAATGATCCTTACATTTTCTTTAAAATGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATGATGTAAAGAAATGATCCTTACATTTTCTTTAAAATGCAGA  250

seq1  ATCTTATATATTTGTTAAGATAGACTCTTGCTATATAGTCCAGTCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATATATTTGTTAAGATAGACTCTTGCTATATAGTCCAGTCTGTGT  300

seq1  TTGAATACAGGATAATCTGATCCTATTCTCAAACTTCTCCAGCTCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACAGGATAATCTGATCCTATTCTCAAACTTCTCCAGCTCTGGAA  350

seq1  TCACAAGTGTGTCCCATCATGCCAGCCTTAAACTTTGCAAATTATTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTGTGTCCCATCATGCCAGCCTTAAACTTTGCAAATTATTGCTA  400

seq1  TAAAAATGTATCTTATACACATTCTCATATTTTATTCTTATAATACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTATCTTATACACATTCTCATATTTTATTCTTATAATACACTG  450

seq1  GAATTGACAATGGTACTGTCGTTATCTGAATTC  483
      |||||||||||||||||||||||||||||||||
seq2  GAATTGACAATGGTACTGTCGTTATCTGAATTC  483

seq1: chr16_70181741_70182931
seq2: B6Ng01-001P05.g_69_1263

seq1  GAATTCTTCCTCATGCAAGTGAAAGAACTCTAGCACTCTGGCCCTGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCATGCAAGTGAAAGAACTCTAGCACTCTGGCCCTGTCTA  50

seq1  CACTCATCCCAGTAGCCCCTACTCCACCACCCCCACCCCCAGGTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCCCAGTAGCCCCTACTCCACCACCCCCACCCCCAGGTTTAAAG  100

seq1  AGCCTTTGTCCCCCTCCTCCCAATAAACCGAAGCAACTCTCCAAAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGTCCCCCTCCTCCCAATAAACCGAAGCAACTCTCCAAAGCTGT  150

seq1  TTGCAGGTGTATTCTTTGCCCACGCACTCACCACAGACCAAGATCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTGTATTCTTTGCCCACGCACTCACCACAGACCAAGATCCTGCC  200

seq1  TGCACCCACATACCTGACTAAGCTAAACTTCTCTCCCTCCACTCCAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCACATACCTGACTAAGCTAAACTTCTCTCCCTCCACTCCAGCCT  250

seq1  GGTCTGCAACAGGCCAGATACCGCGAGGGAGAAACAGACACAGACCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCAACAGGCCAGATACCGCGAGGGAGAAACAGACACAGACCTGCA  300

seq1  GTTTGTGGCTTTTATTTGCCACAGGGCCACTCATCCAGAAAGTAGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGCTTTTATTTGCCACAGGGCCACTCATCCAGAAAGTAGGAATG  350

seq1  ACAGCAGGTTTTCAAAGGGGTTCAAAGAGTTGATAGAACTATTCCTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTTTTCAAAGGGGTTCAAAGAGTTGATAGAACTATTCCTGATG  400

seq1  GATGGGCTAAAAAAGAGCTCAATGGTGGAACACTGTCCGTTTTTATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTAAAAAAGAGCTCAATGGTGGAACACTGTCCGTTTTTATATAG  450

seq1  GCAGGTTTTTTTTAAAAACAGTGTACTTTTCTTCTACTATTTGGTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTTTTTTAAAAACAGTGTACTTTTCTTCTACTATTTGGTATTTT  500

seq1  TAAAGTCAGGGTTGGAAAACGAGCAAAGTGGGCTGCAGAGATGGCTCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAGGGTTGGAAAACGAGCAAAGTGGGCTGCAGAGATGGCTCCGT  550

seq1  GGATAAAATGTTTTCTGTGCAGGCGTGAGAACCAGATTGAGAGTCCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAATGTTTTCTGTGCAGGCGTGAGAACCAGATTGAGAGTCCCCAG  600

seq1  AGTCAGCGGCAACACGAATTGCCATCCTGGCATACCTGTGGTGAGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCGGCAACACGAATTGCCATCCTGGCATACCTGTGGTGAGAAGAA  650

seq1  AAGGAGCTAGAGAAATCTCCGGAATCTGACGGGCCACTTAGTGTGGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTAGAGAAATCTCCGGAATCTGACGGGCCACTTAGTGTGGCACA  700

seq1  GAGAGGTGACCAACAAGTGACCCTACCTCCAACAAAGTGGAAAGCGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGACCAACAAGTGACCCTACCTCCAACAAAGTGGAAAGCGAGGA  750

seq1  CCGAAAACTGAAATTGTTCTCTGCGCACCACACACTCACAGCGGCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAACTGAAATTGTTCTCTGCGCACCACACACTCACAGCGGCATGTA  800

seq1  ATTATTCTTAAACACACACACCGTCACACGCATACACATGCATGTACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTAAACACACACACCGTCACACGCATACACATGCATGTACACA  850

seq1  TACACACGGGCACACGCATGCACATGCACGTACACATACACGCGCACGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACGGGCACACGCATGCACATGCACGTACACATACACGCGCACGTG  900

seq1  TGCGGGCGTGTGTGCGTTCACAAATACACACATAGACCGTAAACAAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGCGTGTGTGCGTTCACAAATACACACATAGACCGTAAACAAACAT  950

seq1  GAATGAAAATGTTTATT-AAAAAAAATAATATGCTTGACGCAACTCTTTC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATGAAAATGTTTATTAAAAAAAAATAATATGCTTGACGCAACTCTTTC  1000

seq1  CTTGGGGTTAACAGCATTCAACCTATCAATTCCCGAGGCATTAGATTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTTAACAGCATTCAACCTATCAATTCCCGAGGCATTAGATTGGC  1050

seq1  AAGG-ATGCAAAGGAAGAAACGAGACAACTTCCAGTCATCCCCTGCATC-  1097
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGGAATGCAAAGGAAGAAACGAGACAACTTCCAGTCATCCCCTGCATCT  1100

seq1  TTCTTGCAGATGACTCGATCTGGGGAAACATTTCCTTTGTTTCAAACACA  1147
      |||||||  ||||||||||||||||||||||||| ||||||||||  || 
seq2  TTCTTGCGAATGACTCGATCTGGGGAAACATTTCTTTTGTTTCAA--ACC  1148

seq1  AACCAGAC-TACCAAGATTACA-TTCGG-ATTCCTTATCCTATTCCT  1191
      ||| |||| |||||  |||||| ||||| |||||||||| |||||||
seq2  AACGAGACATACCAGAATTACATTTCGGAATTCCTTATCGTATTCCT  1195