BAC Information

Click to search

BAC

Clone NameB6Ng01-002F05
Chromosome16 (Build37)
Map Location 46,885,004 - 46,886,098
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757, LOC628776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002F05.bB6Ng01-002F05.g
ACCDH840386DH840387
length9891,092
definitionDH840386|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F05, 5' end.DH840387|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctgtatatatattggatattagtccc
ctatttgatttgggataggtaaagatcctttcccaatttgttggttggct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcaattttc
tgaggaaaattgctcctgtaaggtactcgatcttacagcacaagccaatg
ctgttctattcaggaatttttcccctgtgcccatatcttcaaggcttttc
ccccactttctcctctataagtttcagtgtctctggttttatgtgaagtt
ccttgatccacttagatttgaccttagtacaaggagataagtatggatag
attcgcattcttctacatgataaaaaccagttgtgccagcaccagttgtt
gaaaatgctgtctttcttccactggatggttttagctcccttgtcgaaca
tcaagtgaccataggtgtgtgggttcatttctgggtcttcaattctattc
cattggtctacttgtctgtctctataccagtaccatgcagtttttatcac
aattgctctgtagtaaagctttaggtcaggcatggtgattccaccagagg
ttcttttgtccttgataagagcttgagctatcctacgttttttgttatcc
cagatgaatttgcaaattgctccttctaattcgttgaagaatagagtagg
aattggatgaggattgcatcaatctggagactgcttatggcacccccccc
gggaccctttgttactattggtgatcgttgaacttgtgagactctttatt
ctttgtagatttttttattatctctttctactatctgatatttctttatt
tcttatctattatttcttagtttattgcgccaagatcttttattcccatg
gggcatcgggaaagtgtgtggtgtcctaattcttaccag
gaattctatatctttgactatcacacacacacacacacacacacacacac
acacacgtcatgagccaaatatatcaaactacagaaatttattttttcac
atctctgatggcaaaatggtgtatacaggttcatgttgtttctaaaggct
ctatagaacaatctaccttatccttctatcttagtagatgttggcattgt
tcctcatctccttgtgtgcctttacatcattgtcttttgcaggttctcct
actaaagacattcatcattggattaagtcccatattaaataatttagtat
gacttcatgctaatctcattgcatcagcacagaatccattctaaataaga
acatgtttataagtagtggtgatttgtgctcaggtttttttgtttgtttg
tttgttttttgttttacagaatacattttaatagagaagataatttgaga
aaacacagtgcttccaaaagtattgccaaaagaatgtgttcaggcttaac
atttgttgtccaccccgaatctgaggtaacatcggtgctatcaacagaag
acaaagacactcagttttattccattgtcatttgccaagccccaatcatc
ccctccctgttgaagaatgttgggaagctctgaagagttcttgtatagtt
ttacttataacatatcttaatctttgacccatcttttatatatgaccttc
taattgattcatatatttttctttgaatcgacaaaaaaatcataggtttt
tttaagtcacttggtattttattttcctgatattctaaaatctctatcac
aatatttgagacataggagaccctccgctgcattcacttgttgatactga
agtgcacagaagcatgtttgattagatagctataatttagggataagtta
tttccctcaaattattcaagtattcattcttctcaagtcaaattaagagg
acttctattggaaactagttttctacttctttagatgggatcagtgcccc
tctccagatctcgtgttcttctagttatgcttgtcattttataatatata
aaaagagggttgttatcatcactatctatctatcactatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46885004_46886098
seq2: B6Ng01-002F05.g_68_1159 (reverse)

seq1  TAGATA--GATAGATAGATA--------AACAAACCACTCTTTTTATATA  40
      ||||||  ||||||||||||        |||||  | |||||||||||||
seq2  TAGATAGTGATAGATAGATAGTGATGATAACAA--CCCTCTTTTTATATA  48

seq1  TTTTAATAAAATGACAAGCATACACTAGAAGAACACCGAGATCTTGTGAG  90
      ||   ||||||||||||||||| |||||||||||| ||||||||   |||
seq2  TT---ATAAAATGACAAGCATA-ACTAGAAGAACA-CGAGATCT--GGAG  91

seq1  AGGGGCACTTGATCCCATCTTAAAGAGTAGAAAACTAGTTTCCAATAGAA  140
      |||||||| ||||||||||| ||  ||||||||||||||||||||||| |
seq2  AGGGGCAC-TGATCCCATCTAAAGAAGTAGAAAACTAGTTTCCAATAG-A  139

seq1  AGTCCTCTTAATTTTGACTTGAAGAAGAATGAATACTTGAATAATTTGAG  190
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AGTCCTCTTAA-TTTGACTTG-AGAAGAATGAATACTTGAATAATTTGAG  187

seq1  GGAAATAACTTATCCCTAAATTATAGCTATCTAATCAAACATGCTTCTGT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAACTTATCCCTAAATTATAGCTATCTAATCAAACATGCTTCTGT  237

seq1  GCACTTCAGTATCAACAAGTGAATGCAGCGGAGGGTCTCCTATGTCTCAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCAGTATCAACAAGTGAATGCAGCGGAGGGTCTCCTATGTCTCAA  287

seq1  ATATTGTGATAGAGATTTTAGAATATCAGGAAAATAAAATACCAAGTGAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGATAGAGATTTTAGAATATCAGGAAAATAAAATACCAAGTGAC  337

seq1  TTAAAAAAACCTATGATTTTTTTGTCGATTCAAAGAAAAATATATGAATC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAACCTATGATTTTTTTGTCGATTCAAAGAAAAATATATGAATC  387

seq1  AATTAGAAGGTCATATATAAAAGATGGGTCAAAGATTAAGATATGTTATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAGGTCATATATAAAAGATGGGTCAAAGATTAAGATATGTTATA  437

seq1  AGTAAAACTATACAAGAACTCTTCAGAGCTTCCCAACATTCTTCAACAGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACTATACAAGAACTCTTCAGAGCTTCCCAACATTCTTCAACAGG  487

seq1  GAGGGGATGATTGGGGCTTGGCAAATGACAATGGAATAAAACTGAGTGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGATTGGGGCTTGGCAAATGACAATGGAATAAAACTGAGTGTC  537

seq1  TTTGTCTTCTGTTGATAGCACCGATGTTACCTCAGATTCGGGGTGGACAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTCTGTTGATAGCACCGATGTTACCTCAGATTCGGGGTGGACAA  587

seq1  CAAATGTTAAGCCTGAACACATTCTTTTGGCAATACTTTTGGAAGCACTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTAAGCCTGAACACATTCTTTTGGCAATACTTTTGGAAGCACTG  637

seq1  TGTTTTCTCAAATTATCTTCTCTATTAAAATGTATTCTGTAAAACAAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCAAATTATCTTCTCTATTAAAATGTATTCTGTAAAACAAAAA  687

seq1  ACAAACAAACAAACAAAAAAACCTGAGCACAAATCACCACTACTTATAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAAAAACCTGAGCACAAATCACCACTACTTATAAA  737

seq1  CATGTTCTTATTTAGAATGGATTCTGTGCTGATGCAATGAGATTAGCATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTTATTTAGAATGGATTCTGTGCTGATGCAATGAGATTAGCATG  787

seq1  AAGTCATACTAAATTATTTAATATGGGACTTAATCCAATGATGAATGTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATACTAAATTATTTAATATGGGACTTAATCCAATGATGAATGTCT  837

seq1  TTAGTAGGAGAACCTGCAAAAGACAATGATGTAAAGGCACACAAGGAGAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGAGAACCTGCAAAAGACAATGATGTAAAGGCACACAAGGAGAT  887

seq1  GAGGAACAATGCCAACATCTACTAAGATAGAAGGATAAGGTAGATTGTTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAATGCCAACATCTACTAAGATAGAAGGATAAGGTAGATTGTTC  937

seq1  TATAGAGCCTTTAGAAACAACATGAACCTGTATACACCATTTTGCCATCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCCTTTAGAAACAACATGAACCTGTATACACCATTTTGCCATCA  987

seq1  GAGATGTGAAAAAATAAATTTCTGTAGTTTGATATATTTGGCTCATGACG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGAAAAAATAAATTTCTGTAGTTTGATATATTTGGCTCATGACG  1037

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAGTCAAAGATATAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAGTCAAAGATATAG  1087

seq1  AATTC  1095
      |||||
seq2  AATTC  1092