BAC Information

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BAC

Clone NameB6Ng01-002O20
Chromosome16 (Build37)
Map Location 54,061,968 - 54,184,531
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433027
Downstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O20.bB6Ng01-002O20.g
ACCDH840803DH840804
length1,2091,135
definitionDH840803|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O20, 5' end.DH840804|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,183,329 - 54,184,531)(54,061,968 - 54,063,112)
sequence
gaattcaatccttgctgatggcttacaatttttatactgtccaacatgta
acaaactaatttactgataggacaataaatatattaacaataaatattag
aatcaagtgaagagaagataatattatatgttagccacagatatatgtat
taaattttccatgattcaaaagcttgtgtataatctcatcaaaatcaaga
tattcagggttgatttggtatttacttttaatactctttcactatgcagt
aactgacttgtaacagattattttccttattctttttctttcaaaacaat
tagcttaaattagaaactgatgacaaagagtagatacaaaagattcaagt
agatgtcacagcttcagttcctgtataaaaaaaaaaaaataatgagcaca
atgcaaggcacttcaaatcttatttccttcagaaagagagtttaatcaga
gtgtaatgagcattgaaattaataaattaaaaataaatgtccataaggga
aaagtgtatttcaatcagacagtaattatgttttcaactttgtaaattaa
ttccccaaatgaatatatttcagtgtactcaatctattatcatttcatct
tattttaagcttagtgtttttaacttgactaatccagattataagaaaaa
ttaagaagtgaatacttaattaaaatatctagtaacattccatccacttg
acaatatgtcatcaaggttttaaatgttgaagaccagtaatcatttttat
ggttgatatagaaataaatgaagcacctgtatttgtgttagacaacccat
tgagatattagtatatcgacttattgaaggcagagagaacatgttaaaat
acgaaatcactaaattgatacaagcacatattttctcatttaaagatatg
cagtgtggggcttagttgtttaaattcaaagtctgcttaacagcctgatt
ttagtataggtattgaatataatttgtggtcaagcaaacttctccatttg
tagatttttcaagaaataatgaggaaaattatccccacaaaaatagtcat
gacgaaaaagaaatggagaacattttctatgaagccctttatttatcaca
aagagccactatgatacctattttttaaaattaaatccgcctcacataat
tacctgcctctctgttccgcaatgaccattgtggtgtttatcccgctgcc
caatggtta
gaattccagaaagcctggcatgtatactaaccttaattttcattcccaat
atgaggattctcaaaagagtgagggtaagcaatacacaaaatgtgtaagt
tttctcagagaaatgacagatttaatcaaagtgttttgtgaatattctta
aaaggaggagtaactcctgcttcaattaaataattcatcattgcttattt
ttaacaattacagttatacttcaaatgtccatacctgtatgtttatttta
catatatataatgatttagagaaaatactcagaaaaactcaactatgcaa
tacacaattcattctgctttactacacagacacaaacatatatacatata
cacacatgtatatgaaactaaataatgcagttctggtcatatatttccat
atacatgctttacatagcttaataaaatattttcttttgtaataaacttt
cttcagtttttttgcatgcatggaatcttggttcaatcttatttgcatgg
tgacagtaagaagaaaaatatcattgctaatcccttctaatcttttttaa
gatctgagatttgagaacattttagttattaaaatttgtcactcaagttt
tatatatagctaacttaacatttacataatcttctatgtctgggatattt
agatggcaaaactcacttaaaaaataaagtagtgttttagttatctctta
aaatgaaagttgaaccaaggttagtgatgatttgaaactattataacttt
aatagtcaaaaaagtttatgtctaatctttaaggacacagtggctagatc
tttaggaaataagtgattaggtcatgagagttctatccagtgagtgatta
tttctcttaccccatggggcagatattgcaaaagtggaaatatatatgag
aagtgtatgtcagtaattatggttgtaaaatatgtattatctccgaaact
tcctttgaaatctaagttctacacaatccaggacgtgcaaatttggttct
ccttcaagtcagcatccaatagacagcagaagtgtactacagtttgacag
tagttggagtagtaccatgacagatcaagtctgcactgaccttctgatgg
ttggatgactaaatatgggaaaatacttttggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54183329_54184531
seq2: B6Ng01-002O20.b_45_1253 (reverse)

seq1  TAACCATTTGGGCAGCAGAAAACAACAACAAAATG--CAT--CGTGACAG  46
      |||||| ||||||||| | | | |||| || ||||  |||  ||  ||||
seq2  TAACCA-TTGGGCAGCGGGATA-AACACCACAATGGTCATTGCGGAACAG  48

seq1  A-AAGCA-GTAATATAGTGA-GCAGATTAAATATTAAAAAATA-GTATCA  92
      | | ||| |||||   |||| || |||| ||| |||||||||| ||||||
seq2  AGAGGCAGGTAATTATGTGAGGCGGATTTAATTTTAAAAAATAGGTATCA  98

seq1  TAGTGCTTCTTTGTGATAAATAAA-GGCTTCATAGAAAATG-TCT-CATT  139
      |||||  ||||||||||||||||| |||||||||||||||| ||| ||||
seq2  TAGTGGCTCTTTGTGATAAATAAAGGGCTTCATAGAAAATGTTCTCCATT  148

seq1  TCTTTTTCGTCATGACTA-TTATGT-GAGATAAATTTTTCCTCA-TATTT  186
      |||||||||||||||||| || ||| | |||||  ||||||||| |||||
seq2  TCTTTTTCGTCATGACTATTTTTGTGGGGATAA--TTTTCCTCATTATTT  196

seq1  CTTTGAAAAATCTACAAATGGAAGAAGTTTGCTTGACCACAAAATTATAT  236
      | ||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  C-TTGAAAAATCTACAAATGG-AGAAGTTTGCTTGACCAC-AAATTATAT  243

seq1  TCAATACCTATACTAAAATCAGGCTGTTAAGCAGACTTTGAATTTAAACA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCTATACTAAAATCAGGCTGTTAAGCAGACTTTGAATTTAAACA  293

seq1  ACTAAGCCCCACACTGACTTATCTTTAAATGAGAAAATATGTGCTTGTAT  336
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  ACTAAGCCCCACACTG-CATATCTTTAAATGAGAAAATATGTGCTTGTAT  342

seq1  CAATTTAGTGATTTCGTATTTTAACATGTTCTCTCTGCCTTCAATAAGTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGTGATTTCGTATTTTAACATGTTCTCTCTGCCTTCAATAAGTC  392

seq1  GATATACTAATATCTCAATGGGTTGTCTAACACAAATACAGGTGCTTCAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACTAATATCTCAATGGGTTGTCTAACACAAATACAGGTGCTTCAT  442

seq1  TTATTTCTATATCAACCATAAAAATGATTACTGGTCTTCAACATTTAAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTATATCAACCATAAAAATGATTACTGGTCTTCAACATTTAAAA  492

seq1  CCTTGATGACATATTGTCAAGTGGATGGAATGTTACTAGATATTTTAATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGACATATTGTCAAGTGGATGGAATGTTACTAGATATTTTAATT  542

seq1  AAGTATTCACTTCTTAATTTTTCTTATAATCTGGATTAGTCAAGTTAAAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCACTTCTTAATTTTTCTTATAATCTGGATTAGTCAAGTTAAAA  592

seq1  ACACTAAGCTTAAAATAAGATGAAATGATAATAGATTGAGTACACTGAAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGCTTAAAATAAGATGAAATGATAATAGATTGAGTACACTGAAA  642

seq1  TATATTCATTTGGGGAATTAATTTACAAAGTTGAAAACATAATTACTGTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATTTGGGGAATTAATTTACAAAGTTGAAAACATAATTACTGTC  692

seq1  TGATTGAAATACACTTTTCCCTTATGGACATTTATTTTTAATTTATTAAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAATACACTTTTCCCTTATGGACATTTATTTTTAATTTATTAAT  742

seq1  TTCAATGCTCATTACACTCTGATTAAACTCTCTTTCTGAAGGAAATAAGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCTCATTACACTCTGATTAAACTCTCTTTCTGAAGGAAATAAGA  792

seq1  TTTGAAGTGCCTTGCATTGTGCTCATTATTTTTTTTTTTTTATACAGGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTGCCTTGCATTGTGCTCATTATTTTTTTTTTTTTATACAGGAA  842

seq1  CTGAAGCTGTGACATCTACTTGAATCTTTTGTATCTACTCTTTGTCATCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTGTGACATCTACTTGAATCTTTTGTATCTACTCTTTGTCATCA  892

seq1  GTTTCTAATTTAAGCTAATTGTTTTGAAAGAAAAAGAATAAGGAAAATAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAATTTAAGCTAATTGTTTTGAAAGAAAAAGAATAAGGAAAATAA  942

seq1  TCTGTTACAAGTCAGTTACTGCATAGTGAAAGAGTATTAAAAGTAAATAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACAAGTCAGTTACTGCATAGTGAAAGAGTATTAAAAGTAAATAC  992

seq1  CAAATCAACCCTGAATATCTTGATTTTGATGAGATTATACACAAGCTTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAACCCTGAATATCTTGATTTTGATGAGATTATACACAAGCTTTT  1042

seq1  GAATCATGGAAAATTTAATACATATATCTGTGGCTAACATATAATATTAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGGAAAATTTAATACATATATCTGTGGCTAACATATAATATTAT  1092

seq1  CTTCTCTTCACTTGATTCTAATATTTATTGTTAATATATTTATTGTCCTA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCACTTGATTCTAATATTTATTGTTAATATATTTATTGTCCTA  1142

seq1  TCAGTAAATTAGTTTGTTACATGTTGGACAGTATAAAAATTGTAAGCCAT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAATTAGTTTGTTACATGTTGGACAGTATAAAAATTGTAAGCCAT  1192

seq1  CAGCAAGGATTGAATTC  1203
      |||||||||||||||||
seq2  CAGCAAGGATTGAATTC  1209

seq1: chr16_54061968_54063112
seq2: B6Ng01-002O20.g_67_1201

seq1  GAATTCCAGAAAGCCTGGCATGTATACTAACCTTAATTTTCATTCCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGCCTGGCATGTATACTAACCTTAATTTTCATTCCCAAT  50

seq1  ATGAGGATTCTCAAAAGAGTGAGGGTAAGCAATACACAAAATGTGTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATTCTCAAAAGAGTGAGGGTAAGCAATACACAAAATGTGTAAGT  100

seq1  TTTCTCAGAGAAATGACAGATTTAATCAAAGTGTTTTGTGAATATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGAGAAATGACAGATTTAATCAAAGTGTTTTGTGAATATTCTTA  150

seq1  AAAGGAGGAGTAACTCCTGCTTCAATTAAATAATTCATCATTGCTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGAGTAACTCCTGCTTCAATTAAATAATTCATCATTGCTTATTT  200

seq1  TTAACAATTACAGTTATACTTCAAATGTCCATACCTGTATGTTTATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATTACAGTTATACTTCAAATGTCCATACCTGTATGTTTATTTTA  250

seq1  CATATATATAATGATTTAGAGAAAATACTCAGAAAAACTCAACTATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATAATGATTTAGAGAAAATACTCAGAAAAACTCAACTATGCAA  300

seq1  TACACAATTCATTCTGCTTTACTACACAGACACAAACATATATACATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATTCATTCTGCTTTACTACACAGACACAAACATATATACATATA  350

seq1  CACACATGTATATGAAACTAAATAATGCAGTTCTGGTCATATATTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTATATGAAACTAAATAATGCAGTTCTGGTCATATATTTCCAT  400

seq1  ATACATGCTTTACATAGCTTAATAAAATATTTTCTTTTGTAATAAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCTTTACATAGCTTAATAAAATATTTTCTTTTGTAATAAACTTT  450

seq1  CTTCAGTTTTTTTGCATGCATGGAATCTTGGTTCAATCTTATTTGCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTTTTTGCATGCATGGAATCTTGGTTCAATCTTATTTGCATGG  500

seq1  TGACAGTAAGAAGAAAAATATCATTGCTAATCCCTTCTAATCTTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAAGAAGAAAAATATCATTGCTAATCCCTTCTAATCTTTTTTAA  550

seq1  GATCTGAGATTTGAGAACATTTTAGTTATTAAAATTTGTCACTCAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGATTTGAGAACATTTTAGTTATTAAAATTTGTCACTCAAGTTT  600

seq1  TATATATAGCTAACTTAACATTTACATAATCTTCTATGTCTGGGATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGCTAACTTAACATTTACATAATCTTCTATGTCTGGGATATTT  650

seq1  AGATGGCAAAACTCACTTAAAAAATAAAGTAGTGTTTTAGTTATCTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAAACTCACTTAAAAAATAAAGTAGTGTTTTAGTTATCTCTTA  700

seq1  AAATGAAAGTTGAACCAAGGTTAGTGATGATTTGAAACTATTATAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGTTGAACCAAGGTTAGTGATGATTTGAAACTATTATAACTTT  750

seq1  AATAGTCAAAAAAGTTTATGTCTAATCTTTAAGGACACAGTGGCTAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAAAAAAGTTTATGTCTAATCTTTAAGGACACAGTGGCTAGATC  800

seq1  TTTAGGAAATAAGTGATTAGGTCATGAGAGTTCTATCCAGTGAGTGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAATAAGTGATTAGGTCATGAGAGTTCTATCCAGTGAGTGATTA  850

seq1  TTTCTCTTACCCCATGGGGCAGATATTGCAAAAGTGGAAATATATATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTACCCCATGGGGCAGATATTGCAAAAGTGGAAATATATATGAG  900

seq1  AAGTGTATGTCAGTAATTATGGTTGTAAAATATGTATTATCTCCGAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATGTCAGTAATTATGGTTGTAAAATATGTATTATCTCCGAAACT  950

seq1  TCCTTTGAAATCTAAGTTCTACAACAATCCAGGAACGTGCAAATTTGGTT  1000
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  TCCTTTGAAATCTAAGTTCTAC-ACAATCCAGG-ACGTGCAAATTTGGTT  998

seq1  CTCCTTCAAAGTCAGCATCCAATAGACAGCAGAAGTTGTACTACCAGTTT  1050
      ||||||| ||||||||||||||||||||||||||| ||||||| ||||||
seq2  CTCCTTC-AAGTCAGCATCCAATAGACAGCAGAAG-TGTACTA-CAGTTT  1045

seq1  GAACAGTAGTT-GAGTAGTACCAATGACCAGATCAAGTCTGCACTGACC-  1098
      | ||||||||| |||||||||| |||| ||||||||||||||||||||| 
seq2  G-ACAGTAGTTGGAGTAGTACC-ATGA-CAGATCAAGTCTGCACTGACCT  1092

seq1  TCTGAATGTGTGGATGACTAAATAGTGGGGAAAATACTTTTTGGCAT  1145
      |||| |||  ||||||||||||||   |||||||||| |||||||||
seq2  TCTG-ATGGTTGGATGACTAAATA--TGGGAAAATAC-TTTTGGCAT  1135