BAC Information

Click to search

BAC

Clone NameB6Ng01-003B02
Chromosome16 (Build37)
Map Location 89,346,787 - 89,347,858
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B02.bB6Ng01-003B02.g
ACCDH840897DH840898
length7281,064
definitionDH840897|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B02, 5' end.DH840898|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacttgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggggaatgcaaatcaaaagaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaagatccagcaatacctcttctgggc
atatatccagaagatgttctaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagatgctggaaagaacccagat
gcccctcatcagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactgctcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggaactggagggcatcatcctgagtgaggtaaccttacacaaagg
aactcgcacaatatgtactcactgataagtggatattagcccagaaactt
agaatacccaagatataagatacaattttgctaaacatgaaattcatgaa
gaacgaagaccagagtgtggacacttttgcccctttcttagaaatgggaa
ctataatccctttgatttgatgtttcag
gaattccatagtctccaaaaggtaaaagagtcaagggacagatgatctct
tagacccaggcctcacagacttcttcacttcatcccatgtaggagtttgg
gacttctgaattgcagaactatgaataaataaacgcagtggtaattcatt
acagtaccaaaaggatcttagaaaatgtcatggaaacaaccagtgagtta
ttcagtggctgattttaaacatccggtgcagtgtttgcatccagaaagta
atagttgactaaaagcataaaatctacttttatttttgtttttaatcttc
cctcctccatagggatgtttctaaaaatctatgagaattgatattcttat
aagtgacagaatgatctttgacattttatacccagcagatgactttggta
aaaatggtaacattggccaagagagtttgtgaatgattctcaaagcttgt
gacattgtagataaatagtttcaacatcacttttctggaatccctggaat
gagaagcatttcaggaatttggttttaaagtagatgcacagatctaataa
ggtatcatggagttggggcgcaaatccaaacatttgagttttatatacat
cttgtgatgaagtcctgaaggttattttatacagtgattttggtgagcca
atattgtgacctgtcacatggagttagtcatgaaaattgtctcatgtggc
cccctaaaatttttagattttatagcatttcagatttctttttttttttc
cattttttattaggtatttagctcatttacatttccaatgctataccaaa
agtcccccatacccaccccacacccactcccctacccacccacttcccct
ttttgggccctggcgttcccctgtactggggcatataaagttgcgtgtcc
aatgggcctctcttttcacatatgaactaaccagtaccctggagctcttg
actctagctgcatatgcatttcagatttctaagcagtgtattacacctcc
ctatttgtgtttgtaagtaaaacattcatcattttcatctttattgaatc
agagtacagaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89346787_89347858
seq2: B6Ng01-003B02.g_66_1129 (reverse)

seq1  GAATTCTGTACTCTGATTTCAATAAAGAATGAAAAATGATGGATGTTTTA  50
      |||||||||||||||| |||||||||| ||| ||||||||| ||||||||
seq2  GAATTCTGTACTCTGA-TTCAATAAAG-ATG-AAAATGATGAATGTTTTA  47

seq1  ACTTTACAAACACAAATAGGGGAGGTGTAATACACCTGCTTAAGAAATCT  100
         ||||||||||||||| ||||||||||||||| |||||| ||||||||
seq2  --CTTACAAACACAAATA-GGGAGGTGTAATACA-CTGCTT-AGAAATCT  92

seq1  GAAATGCATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTTCA  142

seq1  TAATGTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGT  200
      | ||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  T-ATGTGAAAAGAGAGGCCCATTGGACACGC-AACTTTATATGCCCCAGT  190

seq1  ACAGGGGAACGCCAGGG-CCAAAAAGGGGAAGTGGGTGGGTAGGGGAGTG  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGGGGAACGCCAGGGCCCAAAAAGGGGAAGTGGGTGGGTAGGGGAGTG  240

seq1  GGTGT-GGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAAT  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAAT  290

seq1  GAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAAGAAATCTGAAATGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAAGAAATCTGAAATGC  340

seq1  TATAAAATCTAAAAATTTTAGGGGGCCACATGAGACAATTTTCATGACTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCTAAAAATTTTAGGGGGCCACATGAGACAATTTTCATGACTA  390

seq1  ACTCCATGTGACAGGTCACAATATTGGCTCACCAAAATCACTGTATAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGTGACAGGTCACAATATTGGCTCACCAAAATCACTGTATAAAA  440

seq1  TAACCTTCAGGACTTCATCACAAGATGTATATAAAACTCAAATGTTTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTCAGGACTTCATCACAAGATGTATATAAAACTCAAATGTTTGGA  490

seq1  TTTGCGCCCCAACTCCATGATACCTTATTAGATCTGTGCATCTACTTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGCCCCAACTCCATGATACCTTATTAGATCTGTGCATCTACTTTAA  540

seq1  AACCAAATTCCTGAAATGCTTCTCATTCCAGGGATTCCAGAAAAGTGATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATTCCTGAAATGCTTCTCATTCCAGGGATTCCAGAAAAGTGATG  590

seq1  TTGAAACTATTTATCTACAATGTCACAAGCTTTGAGAATCATTCACAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTATTTATCTACAATGTCACAAGCTTTGAGAATCATTCACAAAC  640

seq1  TCTCTTGGCCAATGTTACCATTTTTACCAAAGTCATCTGCTGGGTATAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGCCAATGTTACCATTTTTACCAAAGTCATCTGCTGGGTATAAA  690

seq1  ATGTCAAAGATCATTCTGTCACTTATAAGAATATCAATTCTCATAGATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAGATCATTCTGTCACTTATAAGAATATCAATTCTCATAGATTT  740

seq1  TTAGAAACATCCCTATGGAGGAGGGAAGATTAAAAACAAAAATAAAAGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACATCCCTATGGAGGAGGGAAGATTAAAAACAAAAATAAAAGTA  790

seq1  GATTTTATGCTTTTAGTCAACTATTACTTTCTGGATGCAAACACTGCACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGCTTTTAGTCAACTATTACTTTCTGGATGCAAACACTGCACC  840

seq1  GGATGTTTAAAATCAGCCACTGAATAACTCACTGGTTGTTTCCATGACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTAAAATCAGCCACTGAATAACTCACTGGTTGTTTCCATGACAT  890

seq1  TTTCTAAGATCCTTTTGGTACTGTAATGAATTACCACTGCGTTTATTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGATCCTTTTGGTACTGTAATGAATTACCACTGCGTTTATTTAT  940

seq1  TCATAGTTCTGCAATTCAGAAGTCCCAAACTCCTACATGGGATGAAGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTCTGCAATTCAGAAGTCCCAAACTCCTACATGGGATGAAGTGA  990

seq1  AGAAGTCTGTGAGGCCTGGGTCTAAGAGATCATCTGTCCCTTGACTCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTGTGAGGCCTGGGTCTAAGAGATCATCTGTCCCTTGACTCTTT  1040

seq1  TACCTTTTGGAGACTATGGAATTC  1072
      ||||||||||||||||||||||||
seq2  TACCTTTTGGAGACTATGGAATTC  1064