BAC Information

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BAC

Clone NameB6Ng01-003B12
Chromosome16 (Build37)
Map Location 53,857,013 - 53,979,816
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B12.bB6Ng01-003B12.g
ACCDH840914DH840915
length1,196640
definitionDH840914|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B12, 5' end.DH840915|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,978,613 - 53,979,816)(53,857,013 - 53,857,652)
sequence
gaattctagggctgggggagtccagatttgtttagtgctctgctctataa
cccaacgtaaagtgatttagcagcactctgtacccaaggagtagaactct
taatttttcttagattaattatttattcttcggaagaagaataaaaaaat
ttctttctgcttcgaaaggcagagggcttagctgggcagggttggggata
gggagagcaagagtgaactagcaacagtagacaagcaggcaggtaagctg
aagatcttagagttacaattaggtttctaatcaaataaaattatgagaca
tacagagatcaatataaaccatagtcaaaaaacaatatagaaaaccatga
caggcacaataacttgggcacatattattgacctgttgtccatacattat
cactcttacattgtgctgattttgacattcctgagttggtattaagcaat
ttctagagtcagtgtcacatttttcattacttaacaggtacttattcata
actgcaggaggactgatcatttcaggaagtgctaagtataaaatttagaa
gaatatacttagaaaagtttaagggtgctttcttacacccctactttatt
tccactcactggatcagcatctataaaatcattcacaaaattagaaataa
ggactactatctttcatgtatcaattaagacattaatattagaatcttaa
acccatgctttcaaatttacaatcagacatgatataataatgttttaacc
tgtattagcacaaataaaggtatccttaattaggtaccagataatattat
tggttatgaatgaaagatatgttctctctcttcttccctcattactacat
tgtattctcttcaccactgacttttaagactctaccaaactgggcagtgg
tggttcatgcctttaatctcagcacttgggaagcagaggcaggcagaatt
tctgagttcgaggccagcctgttctagagagtgagttccaggattaccca
gagaaaatacagagaaaccctgttttcaaaaaacaaacaaattcagtctc
tgtcttgttttctgtcaaatagtttacttcataaatatggtgtcatatta
tgtgcatgtataagatattctgcaaatagaaaaaaaattcaagttcttaa
gaatctgtatatttcttaatacattcttcagtccctccaatttttt
gaattcactctagatgtttatttgtaatgcagaagagtgtgactcataat
cccaaaagaaatacacagacacagattaaaagtatgtagagccttaaaac
tttgtgaaaaccctagcttctttcctgcatcacaaaagttaaatgcctaa
agcaatagttacctttataaaaaatgtattacattgttttataaattgtc
attaaaagattgccagttatatttttcagcccaaaacactgttgattata
agaaattactatgataatttaatcattgtaaataccctttgatattccta
gtaattatcttagaacaggttcagaagaacaagtgagttgaacccttctc
tcaaccaagatacataatgcactatcagttgtgagaatagcctctggggt
tgagcttccaatgctgcggatacagaaagcatggggcaatattagaaaga
ggtaacacatggattcaatcctgaatttggaacaataaaacaaaatatat
cttattataaatgttttgcctggaaatagattattctctcatcaaaacat
tgctactgcagtttccctttcactctcctattcttcctagtcccacttcc
acagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53978613_53979816
seq2: B6Ng01-003B12.b_46_1241 (reverse)

seq1  AAAAAATGGAAGGGACTAGAAAGAATGATATTAAGAAAATAACAGATTCA  50
      ||||||| | |||||||   ||||||| ||||||||||   |||||||| 
seq2  AAAAAATTGGAGGGACT--GAAGAATG-TATTAAGAAATATACAGATTCT  47

seq1  TAAAGAAAAACTTGAATATTTTCTCTTATTTGCAGAATATACTTTATACA  100
      |    || ||||||||| |||| || ||||||||||||||   |||||||
seq2  T----AAGAACTTGAATTTTTTTTC-TATTTGCAGAATAT--CTTATACA  90

seq1  TGCACATAATATGACACATTATTTATG-AGTAAACTATTTGACAGAAAAC  149
      |||||||||||||||||  |||||||| ||||||||||||||||||||||
seq2  TGCACATAATATGACACCATATTTATGAAGTAAACTATTTGACAGAAAAC  140

seq1  AAAGACAGAGACTGAATTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGT  199
       ||||||||||||||||||| ||||||||||  | |||||||||||||||
seq2  -AAGACAGAGACTGAATTTG-TTTGTTTTTTGAAAACAGGGTTTCTCTGT  188

seq1  A-TATCTCTGGGT-ATCCTGGAACTCACTCTCTAGAACAGGCTGGCCTCG  247
      | | ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGGGTAATCCTGGAACTCACTCTCTAGAACAGGCTGGCCTCG  238

seq1  AACTCAGAAA-TCTGCCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGC  296
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  AACTCAGAAATTCTGCCTGCCTCTGCTTCCCAAGTGCTGAGATTAAAGGC  288

seq1  ATGAACCACCACTGCCCAGTTTGGTAGAGTCTTAAAAGTCAGTGGTGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCACCACTGCCCAGTTTGGTAGAGTCTTAAAAGTCAGTGGTGAAG  338

seq1  AGAATACAATGTAGTAATGAGGGAAGAAGAGAGAGAACATATCTTTCATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAATGTAGTAATGAGGGAAGAAGAGAGAGAACATATCTTTCATT  388

seq1  CATAACCAATAATATTATCTGGTACCTAATTAAGGATACCTTTATTTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCAATAATATTATCTGGTACCTAATTAAGGATACCTTTATTTGTG  438

seq1  CTAATACAGGTTAAAACATTATTATATCATGTCTGATTGTAAATTTGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACAGGTTAAAACATTATTATATCATGTCTGATTGTAAATTTGAAA  488

seq1  GCATGGGTTTAAGATTCTAATATTAATGTCTTAATTGATACATGAAAGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTTTAAGATTCTAATATTAATGTCTTAATTGATACATGAAAGAT  538

seq1  AGTAGTCCTTATTTCTAATTTTGTGAATGATTTTATAGATGCTGATCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCCTTATTTCTAATTTTGTGAATGATTTTATAGATGCTGATCCAG  588

seq1  TGAGTGGAAATAAAGTAGGGGTGTAAGAAAGCACCCTTAAACTTTTCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGAAATAAAGTAGGGGTGTAAGAAAGCACCCTTAAACTTTTCTAA  638

seq1  GTATATTCTTCTAAATTTTATACTTAGCACTTCCTGAAATGATCAGTCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCTTCTAAATTTTATACTTAGCACTTCCTGAAATGATCAGTCCT  688

seq1  CCTGCAGTTATGAATAAGTACCTGTTAAGTAATGAAAAATGTGACACTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTTATGAATAAGTACCTGTTAAGTAATGAAAAATGTGACACTGA  738

seq1  CTCTAGAAATTGCTTAATACCAACTCAGGAATGTCAAAATCAGCACAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAATTGCTTAATACCAACTCAGGAATGTCAAAATCAGCACAATG  788

seq1  TAAGAGTGATAATGTATGGACAACAGGTCAATAATATGTGCCCAAGTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGATAATGTATGGACAACAGGTCAATAATATGTGCCCAAGTTAT  838

seq1  TGTGCCTGTCATGGTTTTCTATATTGTTTTTTGACTATGGTTTATATTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTCATGGTTTTCTATATTGTTTTTTGACTATGGTTTATATTGA  888

seq1  TCTCTGTATGTCTCATAATTTTATTTGATTAGAAACCTAATTGTAACTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATGTCTCATAATTTTATTTGATTAGAAACCTAATTGTAACTCT  938

seq1  AAGATCTTCAGCTTACCTGCCTGCTTGTCTACTGTTGCTAGTTCACTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTCAGCTTACCTGCCTGCTTGTCTACTGTTGCTAGTTCACTCTT  988

seq1  GCTCTCCCTATCCCCAACCCTGCCCAGCTAAGCCCTCTGCCTTTCGAAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTATCCCCAACCCTGCCCAGCTAAGCCCTCTGCCTTTCGAAGC  1038

seq1  AGAAAGAAATTTTTTTATTCTTCTTCCGAAGAATAAATAATTAATCTAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATTTTTTTATTCTTCTTCCGAAGAATAAATAATTAATCTAAG  1088

seq1  AAAAATTAAGAGTTCTACTCCTTGGGTACAGAGTGCTGCTAAATCACTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAGAGTTCTACTCCTTGGGTACAGAGTGCTGCTAAATCACTTT  1138

seq1  ACGTTGGGTTATAGAGCAGAGCACTAAACAAATCTGGACTCCCCCAGCCC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGGGTTATAGAGCAGAGCACTAAACAAATCTGGACTCCCCCAGCCC  1188

seq1  TAGAATTC  1204
      ||||||||
seq2  TAGAATTC  1196

seq1: chr16_53857013_53857652
seq2: B6Ng01-003B12.g_69_708

seq1  GAATTCACTCTAGATGTTTATTTGTAATGCAGAAGAGTGTGACTCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGATGTTTATTTGTAATGCAGAAGAGTGTGACTCATAAT  50

seq1  CCCAAAAGAAATACACAGACACAGATTAAAAGTATGTAGAGCCTTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGAAATACACAGACACAGATTAAAAGTATGTAGAGCCTTAAAAC  100

seq1  TTTGTGAAAACCCTAGCTTCTTTCCTGCATCACAAAAGTTAAATGCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAAACCCTAGCTTCTTTCCTGCATCACAAAAGTTAAATGCCTAA  150

seq1  AGCAATAGTTACCTTTATAAAAAATGTATTACATTGTTTTATAAATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTTACCTTTATAAAAAATGTATTACATTGTTTTATAAATTGTC  200

seq1  ATTAAAAGATTGCCAGTTATATTTTTCAGCCCAAAACACTGTTGATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGATTGCCAGTTATATTTTTCAGCCCAAAACACTGTTGATTATA  250

seq1  AGAAATTACTATGATAATTTAATCATTGTAAATACCCTTTGATATTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTACTATGATAATTTAATCATTGTAAATACCCTTTGATATTCCTA  300

seq1  GTAATTATCTTAGAACAGGTTCAGAAGAACAAGTGAGTTGAACCCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATCTTAGAACAGGTTCAGAAGAACAAGTGAGTTGAACCCTTCTC  350

seq1  TCAACCAAGATACATAATGCACTATCAGTTGTGAGAATAGCCTCTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAGATACATAATGCACTATCAGTTGTGAGAATAGCCTCTGGGGT  400

seq1  TGAGCTTCCAATGCTGCGGATACAGAAAGCATGGGGCAATATTAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCCAATGCTGCGGATACAGAAAGCATGGGGCAATATTAGAAAGA  450

seq1  GGTAACACATGGATTCAATCCTGAATTTGGAACAATAAAACAAAATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACATGGATTCAATCCTGAATTTGGAACAATAAAACAAAATATAT  500

seq1  CTTATTATAAATGTTTTGCCTGGAAATAGATTATTCTCTCATCAAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATAAATGTTTTGCCTGGAAATAGATTATTCTCTCATCAAAACAT  550

seq1  TGCTACTGCAGTTTCCCTTTCACTCTCCTATTCTTCCTAGTCCCACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGCAGTTTCCCTTTCACTCTCCTATTCTTCCTAGTCCCACTTCC  600

seq1  ACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  640