BAC Information

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BAC

Clone NameB6Ng01-003J12
Chromosome16 (Build37)
Map Location 67,004,815 - 67,200,150
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneLOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003J12.bB6Ng01-003J12.g
ACCDH841259DH841260
length1,2021,030
definitionDH841259|Mus musculus domesticus DNA, BAC clone: B6Ng01-003J12, 5' end.DH841260|Mus musculus domesticus DNA, BAC clone: B6Ng01-003J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,004,815 - 67,006,035)(67,199,115 - 67,200,150)
sequence
gaattccccagatggaaaaatggaaaccagccctaggaaatacactgcaa
ccaactgactactgcctagcattgccaatcatgacgccttgaaaaccggt
aaaaatataagtgttccatgtgcccttgtgcattcattagatctgtagca
atggtaattttcccgtttttctgtgggattgcacaggggaactgcaaatt
ggccatcccctagagaaggatgaataactcatttcacaaaaatagttaaa
actgctgcatgcaacatagaccaatactttcccccaaagagctaaattct
taaaatcccattttaaaaccttaaccttcgttctgaaggttctgtttgct
agtaaatgaaagttaaaagtgtacagctctgtctcatgcttcccttttat
tttcctctttaaaaaggagtttgatgatagtttataataacctaacgacg
ggcaagaggaagccagacctgtgccgtacatgctggtcagtttccccttt
ggaaacctctgatctcattttgtgtcaagctctacctatccgtgatgtta
tttttaaaccttaaagaagggaggaaactgattgatcttaaacgatttct
aaaaacctatttcccctatactttgcccattataagccatagagatcaac
ctgccccctgctgataaactccatagtttgaaaacactaatcaaacaaga
tagtgaaatgatcaaagcgtagtagtctggtacctccattcagtgtggga
catatctgtgaaactgaagaagagcaggcaatctcaaatacagaccaaaa
gaactcttttaaagcatttcttttgtacttggaaatttgttcatatatat
atctaggagtgctaaaagcctaataaaattcttttgatctggacatggca
agttcttaaagagaagtctaaaaggtcgcagactgtctgctgttctctga
aaatagaataaagcattccatcacccacttcttccctccctctactccta
ccctaatatgctgtattatctatccatgtggtgaaatagaaactaccaca
tgattagagtaagatctaaaactacttcaaattttttttttttttactaa
ataatgggactcctttaggtttgctttccaaggcacaaggcctatgaggg
attctactgggaattcccggagatatgagaaacctccagtatgggaggat
ct
gaattcatttcttggttacgaaagagtaaccagaacaagactctactgtt
gccaccaaaataaatgagttctttccctcattcctcacacagagatgaag
gattattctttctgttcaatgaaactagaacacacaattggagaagagga
gcttatcaaccacacactatggctttgcaaatttggaccccattttataa
gggacatggcaaactgtctggagtaagatttacaaacacatatcactgca
taatcaacaaacaaatgaaaagaaatataagtctacttacaggaagacaa
aaaaaagtccttttatttgatcccatatatcaaaacactgaaaaatgtta
cacatatgtatgcctaagacatacatgtgcacttgtggatttcagtctca
aattataaaaaaaagaaaaaatggtagtcaatattagatttagatttacc
acagatgttagttattaatttaaaattttgattcaaggtgaacaaagcag
acatgaaaagcaaactgagccaatcaaatacatgaaataaaaatataata
aacattttgttgaaatataggagatgcgacatagcatacataattatttt
agtggatttgcataacagtgttatgtattaaaataatactgaaattagtg
ttgtttatatttttatttagatttttgaaatattatgagtgaaaggatgt
gtcacatattctataacatttataatatttttatataaaaacttgtcata
taagtaaattatatttaaagaaattttgtcttagtattctttgtaaactc
aaagactattaaaacttatttttagagaagcataatagtgccatgaactg
tagagtccaatcagtctgaatttaaataaatgaaatgctacctgaaaaga
ctgccattttcgtaattcttataaaaaaatctgaattatacttttttgga
cataagtgggataatgcaaatggaaggactcgtgactatttttcaattct
acttcttctaatatgtttcgtcctcgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67004815_67006035
seq2: B6Ng01-003J12.b_45_1246

seq1  GAATTCCCCAGATGGAAAAATGGAAACCAGCCCTAGGAAATACACTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGATGGAAAAATGGAAACCAGCCCTAGGAAATACACTGCAA  50

seq1  CCAACTGACTACTGCAGAGCATTGCCAATCAGGACGCCTTGAAAACCAGT  100
      |||||||||||||||  |||||||||||||| ||||||||||||||| ||
seq2  CCAACTGACTACTGCCTAGCATTGCCAATCATGACGCCTTGAAAACCGGT  100

seq1  AAAAATATAAGTGTTCCATGTGCCCTTGTGCATTCATTAGATCTGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAAGTGTTCCATGTGCCCTTGTGCATTCATTAGATCTGTAGCA  150

seq1  ATGGTAATTTTCCCGTTAGTCTGTGGTATTAGACGGCGGAACTGCAAATT  200
      |||||||||||||||||  ||||||| |||  || | |||||||||||||
seq2  ATGGTAATTTTCCCGTTTTTCTGTGGGATTGCACAGGGGAACTGCAAATT  200

seq1  GGCCATCCCCTAGAGAAGGATGAATAACTCATTTCACAGAAATAGTTAAA  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCCATCCCCTAGAGAAGGATGAATAACTCATTTCACAAAAATAGTTAAA  250

seq1  ACTGCTGCATGCAACATAGCCCAATACTTTCCCCCAAAGAGCTAAATTCT  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGCTGCATGCAACATAGACCAATACTTTCCCCCAAAGAGCTAAATTCT  300

seq1  TAAAATCCCATTTTAAAACCTTAACCTTCGTTCTGAAGGTTCTGTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAATCCCATTTTAAAACCTTAACCTTCGTTCTGAAGGTTCTGTTTGC-  349

seq1  CAGTAAATGAAAGTTAAAAGTGTACAGCTCTGTCTCATGCTTCCCTTTTA  400
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGAAAGTTAAAAGTGTACAGCTCTGTCTCATGCTTCCCTTTTA  399

seq1  TTTTCCTCTTTAAAAAGGAGTTTGATGATAGTTTATAATAACCTAACGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTAAAAAGGAGTTTGATGATAGTTTATAATAACCTAACGAC  449

seq1  GGGCAAGAGGAAGCCAGACATGTGCCGTACATGCTGGTCAGTTTCCCCTT  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGCAAGAGGAAGCCAGACCTGTGCCGTACATGCTGGTCAGTTTCCCCTT  499

seq1  TGGAAACATCTGATCTCATTTTGTGTCAAGCTCTACCTATCCGTGATGTT  550
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCTCTGATCTCATTTTGTGTCAAGCTCTACCTATCCGTGATGTT  549

seq1  ATTTTTAAACCTTAAAGAAGGGAGGAAACTGATTGATCTTAAACGATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAACCTTAAAGAAGGGAGGAAACTGATTGATCTTAAACGATTTC  599

seq1  TAAAAACCTATTTCCCCTATACTTTGCCCATTATAAGCCATAGAGATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTATTTCCCCTATACTTTGCCCATTATAAGCCATAGAGATCAA  649

seq1  CCTGCCCCCTGCTGATAAACTCCATAGTTTGAAAACACTAATCAAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCCTGCTGATAAACTCCATAGTTTGAAAACACTAATCAAACAAG  699

seq1  ATAGTGAAATGATCAAAGCGTAGTAGTCTGGTACCTCCATTCAGTGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAATGATCAAAGCGTAGTAGTCTGGTACCTCCATTCAGTGTGGG  749

seq1  ACATATCTGTG-AACTGAAGAAGAGCAGGCAATCTCAAATACAGACCAAA  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGTGAAACTGAAGAAGAGCAGGCAATCTCAAATACAGACCAAA  799

seq1  AGAACTCTTTTAAAGCATTTCTTTTGTACTTGGAAATTTGTTCATATATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTTTTAAAGCATTTCTTTTGTACTTGGAAATTTGTTCATATATA  849

seq1  TATCTAGGAGTGCTAAAAGCCTAAT-AAATTCTTTTGATCTGGACATGGC  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATCTAGGAGTGCTAAAAGCCTAATAAAATTCTTTTGATCTGGACATGGC  899

seq1  AAGTTCTTAAAGAGAAAGTCTAAAAGGTCGCAGACTGTCTGCTGTTCTCT  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTAAAGAG-AAGTCTAAAAGGTCGCAGACTGTCTGCTGTTCTCT  948

seq1  GAAAATTAGAATAAAGCATTCCATCACCCACTTCTTCCCCTCCCTCCTAC  998
      ||||| |||||||||||||||||||||||||||||| |||||||| ||||
seq2  GAAAA-TAGAATAAAGCATTCCATCACCCACTTCTT-CCCTCCCT-CTAC  995

seq1  TCCCTACCCTAATATGCTGTATATTCTATCCATGTTGGTGAAATAGAAAC  1048
      | ||||||||||||||||||||  |||||||||| |||||||||||||||
seq2  T-CCTACCCTAATATGCTGTATTATCTATCCATG-TGGTGAAATAGAAAC  1043

seq1  TACCACCAATGATTAGAGTAAGATCTAAAACTAC-TCAAATATTTTTTTT  1097
      ||||||  |||||||||||||||||||||||||| |||||| ||||||||
seq2  TACCAC--ATGATTAGAGTAAGATCTAAAACTACTTCAAATTTTTTTTTT  1091

seq1  TTTTACTAAACATAGGGAACTCCCTTAAGGTTTGCCTTTCCAAAAGCCAC  1147
      |||||||||| | | || ||| |||| ||||||| ||||||  ||| |||
seq2  TTTTACTAAATA-ATGGGACT-CCTTTAGGTTTG-CTTTCC--AAGGCAC  1136

seq1  AAGTCTCATGAAGGGATGCTACTGGAAATATCCACAGGAGATAATGAGAT  1197
      ||| |  ||| |||||| ||||||| |||  ||   |||||| |||||| 
seq2  AAGGCCTATG-AGGGATTCTACTGGGAATTCCC---GGAGAT-ATGAGA-  1180

seq1  CACTTCCAATGAATGGGAGGATCT  1221
       || ||||  | ||||||||||||
seq2  AACCTCCA--GTATGGGAGGATCT  1202

seq1: chr16_67199115_67200150
seq2: B6Ng01-003J12.g_67_1096 (reverse)

seq1  ACAGCTAGGACAAAACATATTTAGAAAAAGTAAAATTGAAAAAATAGATC  50
      ||||| ||||| ||||||| |||||| ||||| ||||| |||||||| ||
seq2  ACAGCGAGGACGAAACATA-TTAGAAGAAGTAGAATTG-AAAAATAG-TC  47

seq1  ATGAGTCCTTCCATTTGTATTATCACACTTAATGTGCAAAAATGTATAAT  100
      | ||||||||||||||| |||||| ||||| |||| |||||| |||||||
seq2  ACGAGTCCTTCCATTTGCATTATCCCACTT-ATGTCCAAAAAAGTATAAT  96

seq1  TAAGATTATTTTACTAAGAATTAAGAAAATGGGGAGTCTTTTCAGGTAGC  150
      | ||||| ||||| ||||||||| |||||| || ||||||||||||||||
seq2  TCAGATTTTTTTA-TAAGAATTACGAAAAT-GGCAGTCTTTTCAGGTAGC  144

seq1  ATATTATTAATTTAAATTCAGACTGATTGGACTCTACAGTTCATAACACT  200
      || | ||| |||||||||||||||||||||||||||||||||||  ||||
seq2  ATTTCATTTATTTAAATTCAGACTGATTGGACTCTACAGTTCATGGCACT  194

seq1  ATTATGCTTCTCTAAAAATAAGTTTTAATAGT-TTTGAGTTTACAAAGAA  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTATGCTTCTCTAAAAATAAGTTTTAATAGTCTTTGAGTTTACAAAGAA  244

seq1  AATTAAGACAAAATTTTCTTTAAATTTAATTTACTTATATGACAAGTTTT  299
       | |||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TACTAAGACAAAA-TTTCTTTAAATATAATTTACTTATATGACAAGTTTT  293

seq1  TATATAAAAATATTATAAATGTTATAGAATTTGTGACACATCCTTTCACT  349
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATATAAAAATATTATAAATGTTATAGAATATGTGACACATCCTTTCACT  343

seq1  CATAATATTTCAAAAATCTAAATAAAAATATAAACAACACTAATTTAAGT  399
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAATATTTCAAAAATCTAAATAAAAATATAAACAACACTAATTTCAGT  393

seq1  ATTATTTTAATACATAACAATTTTATGCAAATACACTAAAATAATTATGT  449
      ||||||||||||||||||| | |||||||||| |||||||||||||||||
seq2  ATTATTTTAATACATAACACTGTTATGCAAATCCACTAAAATAATTATGT  443

seq1  ATGCTATGTCGCATCTCCTATATTTCAACAAAATGTTTATTATATTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGTCGCATCTCCTATATTTCAACAAAATGTTTATTATATTTTTA  493

seq1  TTTCATGTATTTTATTGGCTCAGTTTGCTTTTAATGTCTGCTTTGTTCAC  549
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TTTCATGTATTTGATTGGCTCAGTTTGCTTTTCATGTCTGCTTTGTTCAC  543

seq1  CTTGAATCAAAATTTTAAATTAATAACTAACATCTGTGGTAAATCTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCAAAATTTTAAATTAATAACTAACATCTGTGGTAAATCTAAAT  593

seq1  CTAATATTGACTACCATTTTTTCTTTTTTTTATAATTTGAGACTGAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTGACTACCATTTTTTCTTTTTTTTATAATTTGAGACTGAAATC  643

seq1  CACAAGTGCACATGTATGTTTTATGCATACATATGTGTAACATTTTTCAG  699
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  CACAAGTGCACATGTATGTCTTAGGCATACATATGTGTAACATTTTTCAG  693

seq1  TGTTTTGATATATGGGATCAAATAAAATGACTTTTTTTTGTCTTCCTCTA  749
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TGTTTTGATATATGGGATCAAATAAAAGGACTTTTTTTTGTCTTCCTGTA  743

seq1  AGTAGACTTATATTTCTTTTCATTTGTTTGTTGATTATGCTGTGATATGT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTAGACTTATATTTCTTTTCATTTGTTTGTTGATTATGCAGTGATATGT  793

seq1  GTTTGTAAATCTTACTCCAGACAGTTTGCCATGTCCCTTATAAAATGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAATCTTACTCCAGACAGTTTGCCATGTCCCTTATAAAATGGGG  843

seq1  TCCAAATTTGCAAAGCCATAGTGTGTGGTTGATAAGCTCCTCTTCTCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCAAATTTGCAAAGCCATAGTGTGTGGTTGATAAGCTCCTCTTCTCCAA  893

seq1  TTGTGTGTTCTAGTTTCATTGAACAGAAAGAATAATCCTTCATCTCTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTGTGTTCTAGTTTCATTGAACAGAAAGAATAATCCTTCATCTCTGTG  943

seq1  TGAGGAATGAGGGAAAGAACTCATTTATTTTGGTGGCAACAGTAGAGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATGAGGGAAAGAACTCATTTATTTTGGTGGCAACAGTAGAGTCT  993

seq1  TGTTCTGGTTACTCTTTCTTAACCAAGCTATGAATTC  1036
      |||||||||||||||||| ||||||||  ||||||||
seq2  TGTTCTGGTTACTCTTTCGTAACCAAGAAATGAATTC  1030