BAC Information

Click to search

BAC

Clone NameB6Ng01-003K23
Chromosome16 (Build37)
Map Location 89,210,852 - 89,211,985
singlet/doubletsinglet
Overlap geneEG622935
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288
Downstream geneEG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K23.bB6Ng01-003K23.g
ACCDH841317DH841318
length1,1171,146
definitionDH841317|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K23, 5' end.DH841318|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggcacattttaaggggaaaatactgttggtgtcatctctcatt
ttattcaaagtatttacaactgaagtgtaatcccagaacttgtccaaaaa
ttattcaagaaacaagtgactgctgtaggtaactgcacagtcattttgaa
agccaatatggctaccaattagaaaaacaaaaccgagaaacttatgttgg
agcacccaacccaactgaagtgtatttcacaattgcatctaaaacattac
catatgagacatgggccaaagagaagcacacatccaattgtctaatgatt
gcatggtcattgatatgtttctttaaaaaaaataaatcaacatatatgaa
attacatccataacatctgaaaatatgtttatataagatgtaggtcacca
caagtcaccaattatataaccaataaccaggtcatgcttgattagcaagg
ccctggaaatgtattcacagagataagatatactctataataacaaaaaa
gcaaaacgagagaaaacacaaagaattttacctatgaagttttgtaaagg
aaactgatactaaaagtagacaactgatttatttgtatggtgtaacaggg
tcggatcatatgtacacaataaactaaatttagaatgaggtagtcttgaa
aataaaagcagaccctgatcctgacacctatgatttgaacatgctcctga
cacagagcataattatgtcagtgatgcagcaaccttgttagttcatctaa
taaaacatggcacttactgtgttttcggaagcagagggcatagatgtgtg
acaatacaatgcctgtggttttccctgtcaaagaactaggtatataaaag
atgctcagcagatggtgacattcagactcaaggaacctagtgcctgtttt
cttctgaacagtccacttctgacatatgtgttactacagcagctactatg
gagtctaggctatggctatggtggcctagctatggctatggctgtgctat
gctgtgctatggagctatgtgctatgtatggctgctgcagcccactgtgc
tgtagaagaaactgctgctgtgcttctatgaagaattctgtataaaccta
gcttgctgactgagtgc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgaccatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttggtgaattgcttcctttttttctagagct
tttagagtgttgtcagctgctagtatgtgctctcttccgttttttcttga
aggcactcatagctatgagtttctgtctagagattgcttcattgtgtccc
agaggtttggctactgtgtggctcttttcattactctaaagtctttaatt
cttgctaatccttcttgccaagaatcatgagagaaggctgtcagttccat
ggaagttggcctcggtaatattggtattcgagaaaccctcaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89210852_89211985
seq2: B6Ng01-003K23.b_46_1162

seq1  GAATTCAGGCACATTTTAAGGGGAAAATACTGTTGGTGTCATCTCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCACATTTTAAGGGGAAAATACTGTTGGTGTCATCTCTCATT  50

seq1  TTATTCAAAGTATTTACAACTGAAGTGTAATCCCAGAACTTGTCCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAAGTATTTACAACTGAAGTGTAATCCCAGAACTTGTCCAAAAA  100

seq1  TTATTCAAGAAACAAGTGACTGCTGTAGGTAACTGCACAGTCATTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAGAAACAAGTGACTGCTGTAGGTAACTGCACAGTCATTTTGAA  150

seq1  AGCCAATATGGCTACCAATTAGAAAAACAAAACCGAGAAACTTATGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATATGGCTACCAATTAGAAAAACAAAACCGAGAAACTTATGTTGG  200

seq1  AGCACCCAACCCAACTGAAGTGTATTTCACAATTGCATCTAAAACATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAACCCAACTGAAGTGTATTTCACAATTGCATCTAAAACATTAC  250

seq1  CATATGAGACATGGGCCAAAGAGAAGCACACATCCAATTGTCTAATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGACATGGGCCAAAGAGAAGCACACATCCAATTGTCTAATGATT  300

seq1  GCATGGTCATTGATATGTTTCTTTAAAAAAAATAAATCAACATATATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCATTGATATGTTTCTTTAAAAAAAATAAATCAACATATATGAA  350

seq1  ATTACATCCATAACATCTGAAAATATGTTTATATAAGATGTAGGTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCCATAACATCTGAAAATATGTTTATATAAGATGTAGGTCACCA  400

seq1  CAAGTCACCAATTATATAACCAATAACCAGGTCATGCTTGATTAGCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACCAATTATATAACCAATAACCAGGTCATGCTTGATTAGCAAGG  450

seq1  CCCTGGAAATGTATTCACAGAGATAAGATATACTCTATAATAACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAATGTATTCACAGAGATAAGATATACTCTATAATAACAAAAAA  500

seq1  GCAAAACGAGAGAAAACACAAAGAATTTTACCTATGAAGTTTTGTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACGAGAGAAAACACAAAGAATTTTACCTATGAAGTTTTGTAAAGG  550

seq1  AAACTGATACTAAAAGTAGACAACTGATTTATTTGTATGGTGTAACAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATACTAAAAGTAGACAACTGATTTATTTGTATGGTGTAACAGGG  600

seq1  TCGGATCATATGTACACAATAAACTAAATTTAGAATGAGGTAGTCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCATATGTACACAATAAACTAAATTTAGAATGAGGTAGTCTTGAA  650

seq1  AATAAAAGCAGACCCTGATCCTGACACCTATGATTTGAACATGCTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCAGACCCTGATCCTGACACCTATGATTTGAACATGCTCCTGA  700

seq1  CACAGAGCATAATTATGTCAGTGATGCAGCAACCTTGTTAGTTCATCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCATAATTATGTCAGTGATGCAGCAACCTTGTTAGTTCATCTAA  750

seq1  TAAAACATGGCACTTACTGTGTTTTCGGAAGCAGAGGGCATAGATGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATGGCACTTACTGTGTTTTCGGAAGCAGAGGGCATAGATGTGTG  800

seq1  ACAATACAATGCCTGTGGTTTTCCCTGTCAAAGAACTAGGTATATAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAATGCCTGTGGTTTTCCCTGTCAAAGAACTAGGTATATAAAAG  850

seq1  ATGCTCAGCAGATGGTGACATTCAGACTCAAGGAACCTAGTGCCTGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGCAGATGGTGACATTCAGACTCAAGGAACCTAGTGCCTGTTTT  900

seq1  CCTCTGAACAGTCCACTCCTGACAATATGTGTTACTACAGCAGCTACTAT  950
      | ||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CTTCTGAACAGTCCACTTCTGAC-ATATGTGTTACTACAGCAGCTACTAT  949

seq1  GGAGGTCTAGGCTATGGCTATGGTGGCCTAGGCTATGGCTATGGCTGTGG  1000
      ||| |||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GGA-GTCTAGGCTATGGCTATGGTGGCCTA-GCTATGGCTATGGCTGT-G  996

seq1  CTATGGCTGTGGCTATGGAGGCTATGGTGGCTATGGTTATGGCTGCTGCA  1050
      |||| ||||| |||||||| ||||||   ||||||  |||||||||||||
seq2  CTAT-GCTGT-GCTATGGA-GCTATG--TGCTATG--TATGGCTGCTGCA  1039

seq1  GCCCACTGTGCTGTAGAAGATACTGCTGCTGTGGCTTCTATTGAAGAATT  1100
      |||||||||||||||||||| ||||||||||| ||||||| ||||||| |
seq2  GCCCACTGTGCTGTAGAAGAAACTGCTGCTGT-GCTTCTA-TGAAGAA-T  1086

seq1  TCTGTATATACCCAGCCTTGCTGACTGGAAGTGC  1134
      |||||||| ||| || |||||||||||  |||||
seq2  TCTGTATAAACCTAG-CTTGCTGACTG--AGTGC  1117