BAC Information

Click to search

BAC

Clone NameB6Ng01-003K24
Chromosome16 (Build37)
Map Location 66,329,235 - 66,433,890
singlet/doubletdoublet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K24.bB6Ng01-003K24.g
ACCDH841319DH841320
length1,1481,108
definitionDH841319|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K24, 5' end.DH841320|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,329,235 - 66,330,385)(66,432,758 - 66,433,890)
sequence
gaattcaattccaacacatatttatatcttaaggttgcctattttctgtg
ccttcctccctgacccccaaagttttccaatctagtcatttgccagtctc
agttttaagtccttcctatttatttacacctcattttttctcatatgcct
aatgtagatccaaacttgattgtctgtatactgttatccagagactggaa
gataatgtattctattgccttctgtactccccttctagtctattgtttgg
catagagaaatcagactttactcaaaacatctgttatttttaagtgtcta
ggtggcgattaaaaagcaacattaagacaaacatttctgtcctaacaatt
cattatctcctcagaatggtgtggaagcttcccactaaatagatgattgc
agaaggatgaaagaaagaaagtatagaagggataagaacaacccgttctc
tcatttcttcctgcattcacttagtgtttaccagccatttcttttgcatg
gacaggcccccgaaggagctcactgactaatgggctggagagaacagaaa
atcaatcctcacaatatattacatcacaagaaatgtgcataggcccagag
agggtgtttggagacacttgatctaactattagaaagaaacaagagctaa
ggggattgcatctgagccactggaagaaggcaagtgaaggcccagaggcc
ggagagtgccggcgaaatgtggaacatgaatgtattctaggttggtctaa
agacagatgggaagacagagcagtacttaaaaccaggaagggctgagttt
ctcaggagaagcatttgaaaggtcaactgaagctacatagacattatctg
agtcactcaacggaagtaataagtctgaaaaacgaaacatgtaaaactca
aatgatgcattaaagaaaaaagagaggaaaaaaaatcactgcaaatgtca
gaggaagaaagtgtgatttctcagtcaatggaagcaggcgtctttagtgg
cgttccagtatagacacttgaccgaatgattaggtatggtcagtacatgt
tatgcgtcatcaccaattgatgccattccttatttagtcctctggaaatg
actagaatcatggtcaattcctatggccaagaatgcttggggtccatg
gaattcaattctcaataatgttttttaatgactgtggaagacagtgttta
tagcattttcatcccatgaaagttagggatagtgtttgtgtatatataca
tataatatgtataattaattatttaattgtgcatacatatatttactcta
caaattcttattgactattcttgtgggttacaagcaaaatttaaatccat
cagaaaagaattaaatttttagttactaatgaattggaggagaggtaatt
gcccatggtagcaatgaaggcttatttaactcaagtatgaaagttcaaat
caatggctcaagccagtggattctgagtattttgcatcaagaaattctca
gaataaagttcaggaacaagaaggtgagtttgcagacatttattatggaa
ttatgtgctaaagttttagataatagaacaagaaagcagaacagaaaaca
gaatccattctgccatttttttgctaagagactagaccggatcaaggaca
tttctggatcttggcaagaaaaatgtccttacctctaaactgcctgacca
atttctatcacccattacaatcttgaacaagtttatggtttgaatttgct
ctactaatcataatacatttttttttaattctggggacatctcttcaggc
atattaattccttaaactattgcttgatgccaagctatacactagagact
caattcctaccaccacagctaaagaaacttcatagaagagagaggataaa
agattgtacaggctggaagagcactgttagacttctagtaatgacaagtc
tgttgtatgcatgaactcacaactgaagttgcttgtagaaagaagtcttc
ttggatgactcaagttccaccgtgatttggggaggggctctgtaggtcca
cttttaattgggatgtactcacaactaatactttctaggggagtaaacca
actttttttcaggatgtgctactcatgctttcatctcaacagactcctac
cttatttgtgtacagtcagacatctatgctcagtggattaaaagagatag
gcggcgtcatcttcgctcagacaccgcacacctggcagagcacagacttc
tgaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66329235_66330385
seq2: B6Ng01-003K24.b_49_1196

seq1  GAATTCAATTCCAACACATATTTATATCTTAAGGTTGCCTATTTTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCAACACATATTTATATCTTAAGGTTGCCTATTTTCTGTG  50

seq1  CCTTCCTCCCTGACCCCCAAAGTTTTCCAATCTAGTCATTTGCCAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCTGACCCCCAAAGTTTTCCAATCTAGTCATTTGCCAGTCTC  100

seq1  AGTTTTAAGTCCTTCCTATTTATTTACACCTCATTTTTTCTCATATGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGTCCTTCCTATTTATTTACACCTCATTTTTTCTCATATGCCT  150

seq1  AATGTAGATCCAAACTTGATTGTCTGTATACTGTTATCCAGAGACTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGATCCAAACTTGATTGTCTGTATACTGTTATCCAGAGACTGGAA  200

seq1  GATAATGTATTCTATTGCCTTCTGTACTCCCCTTCTAGTCTATTGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTATTCTATTGCCTTCTGTACTCCCCTTCTAGTCTATTGTTTGG  250

seq1  CATAGAGAAATCAGACTTTACTCAAAACATCTGTTATTTTTAAGTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAAATCAGACTTTACTCAAAACATCTGTTATTTTTAAGTGTCTA  300

seq1  GGTGGCGATTAAAAAGCAACATTAAGACAAACATTTCTGTCCTAACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGATTAAAAAGCAACATTAAGACAAACATTTCTGTCCTAACAATT  350

seq1  CATTATCTCCTCAGAATGGTGTGGAAGCTTCCCACTAAATAGATGATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTCCTCAGAATGGTGTGGAAGCTTCCCACTAAATAGATGATTGC  400

seq1  AGAAGGATGAAAGAAAGAAAGTATAGAAGGGATAAGAACAACCCGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATGAAAGAAAGAAAGTATAGAAGGGATAAGAACAACCCGTTCTC  450

seq1  TCATTTCTTCCTGCATTCACTTAGTGTTTACCAGCCATTTCTTTTGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTCCTGCATTCACTTAGTGTTTACCAGCCATTTCTTTTGCATG  500

seq1  GACAGGCCCCCGAAGGAGCTCACTGACTAATGGGCTGGAGAGAACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCCCCCGAAGGAGCTCACTGACTAATGGGCTGGAGAGAACAGAAA  550

seq1  ATCAATCCTCACAATATATTACATCACAAGAAATGTGCATAGGCCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCTCACAATATATTACATCACAAGAAATGTGCATAGGCCCAGAG  600

seq1  AGGGTGTTTGGAGACACTTGATCTAACTATTAGAAAGAAACAAGAGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTTGGAGACACTTGATCTAACTATTAGAAAGAAACAAGAGCTAA  650

seq1  GGGGATTGCATCTGAGCCACTGGAAGAAGGCAAGTGAAGGCCCAGAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGCATCTGAGCCACTGGAAGAAGGCAAGTGAAGGCCCAGAGGCC  700

seq1  GGAGAGTGCCGGCGAAATGTGGAACATGAATGTATTCTAGGTTGGTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGCCGGCGAAATGTGGAACATGAATGTATTCTAGGTTGGTCTAA  750

seq1  AGACAGATGGGAAGACAGAGCAGTACTTAAAACCAGGAAGGGCTGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGGGAAGACAGAGCAGTACTTAAAACCAGGAAGGGCTGAGTTT  800

seq1  CTCAGGAGAAGCATTTG-AAGGTCAACTGAAGCTACATAGACATTATCTG  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCAGGAGAAGCATTTGAAAGGTCAACTGAAGCTACATAGACATTATCTG  850

seq1  AGTCACTCAACGGAAGTAATAAGTCTGAAAAACGAAACATGTAAAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCAACGGAAGTAATAAGTCTGAAAAACGAAACATGTAAAACTCA  900

seq1  AATGATGCATTAAAGAAAAAAAGAGAGGAAAAAAAATCACTGCAAATGTC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATGATGCATTAAAG-AAAAAAGAGAGGAAAAAAAATCACTGCAAATGTC  949

seq1  AGAGGAAGAAAGTGTGATTTCTCAGGTCAATGGAAGCAGGCGTCTTTAGT  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAGGAAGAAAGTGTGATTTCTCA-GTCAATGGAAGCAGGCGTCTTTAGT  998

seq1  GGCGTTCCAGTATAGACACTTGACCGATTGATTAGGTTATGGTCAGTTAC  1049
      ||||||||||||||||||||||||||| |||||||| ||||||||| |||
seq2  GGCGTTCCAGTATAGACACTTGACCGAATGATTAGG-TATGGTCAG-TAC  1046

seq1  ATGTTATGCGGTCATCACCAATTGATGCCCATTCCTTATTTAGTCCTCT-  1098
      ||||||||| ||||||||||||||||| ||||||||||||||||||||| 
seq2  ATGTTATGC-GTCATCACCAATTGATG-CCATTCCTTATTTAGTCCTCTG  1094

seq1  GAAATGACTAGAATCAT-GTCAA-TCCTATGGCAAAAGAAATGCTT-GGG  1145
      ||||||||||||||||| ||||| ||||||||| ||   ||||||| |||
seq2  GAAATGACTAGAATCATGGTCAATTCCTATGGCCAA--GAATGCTTGGGG  1142

seq1  TCCATG  1151
      ||||||
seq2  TCCATG  1148

seq1: chr16_66432758_66433890
seq2: B6Ng01-003K24.g_65_1172 (reverse)

seq1  CCACCTCAGAAGCTCTGTGGCTCTTGCCAGGAAGGTGGCCGGTTGTCTGG  50
      |||||||||||| ||||| |||| ||||    |||||  ||| ||||| |
seq2  CCACCTCAGAAG-TCTGT-GCTC-TGCC----AGGTGTGCGG-TGTCT-G  41

seq1  AGCCGAAGATGGCGCCGCCCTATCCTTTCCTTTTTAATCCACTGAGCATA  100
      || |||||||| ||||| ||||||   ||  |||||||||||||||||||
seq2  AG-CGAAGATGACGCCG-CCTATC---TC--TTTTAATCCACTGAGCATA  84

seq1  GATGGTTCTGACTGTACACAAAT-AGGTAGGAGTCTTGTTTGGAGAATGA  149
      ||||  ||||||||||||||||| ||||||||||| ||||  ||| ||| 
seq2  GATG--TCTGACTGTACACAAATAAGGTAGGAGTC-TGTT--GAG-ATG-  127

seq1  AAAGCATGAGTAGCAACATCCTGAAAAAAAGTTGGTTTTACTTCCCCTAG  199
      |||||||||||||| |||||||||||||||||||| ||||| ||||||||
seq2  AAAGCATGAGTAGC-ACATCCTGAAAAAAAGTTGG-TTTAC-TCCCCTAG  174

seq1  AAAGTATTAGTTGTGAGTACATCCCAATTAAAAGTGGACCTACAGAGCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTAGTTGTGAGTACATCCCAATTAAAAGTGGACCTACAGAGCCC  224

seq1  CTCCCCAAATCACGGTGGAACTTGAGTCATCCAAGAAGACTTCTTTCTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAAATCACGGTGGAACTTGAGTCATCCAAGAAGACTTCTTTCTAC  274

seq1  AAGCAACTTCAGTTGTGAGTTCATGCATACAACAGACTTGTCATTACTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTCAGTTGTGAGTTCATGCATACAACAGACTTGTCATTACTAG  324

seq1  AAGTCTAACAGTGCTCTTCCAGCCTGTACAATCTTTTATCCTCTCTCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAACAGTGCTCTTCCAGCCTGTACAATCTTTTATCCTCTCTCTTC  374

seq1  TATGAAGTTTCTTTAGCTGTGGTGGTAGGAATTGAGTCTCTAGTGTATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTTTCTTTAGCTGTGGTGGTAGGAATTGAGTCTCTAGTGTATAG  424

seq1  CTTGGCATCAAGCAATAGTTTAAGGAATTAATATGCCTGAAGAGATGTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATCAAGCAATAGTTTAAGGAATTAATATGCCTGAAGAGATGTCC  474

seq1  CCAGAATTAAAAAAAAATGTATTATGATTAGTAGAGCAAATTCAAACCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTAAAAAAAAATGTATTATGATTAGTAGAGCAAATTCAAACCAT  524

seq1  AAACTTGTTCAAGATTGTAATGGGTGATAGAAATTGGTCAGGCAGTTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTTCAAGATTGTAATGGGTGATAGAAATTGGTCAGGCAGTTTAG  574

seq1  AGGTAAGGACATTTTTCTTGCCAAGATCCAGAAATGTCCTTGATCCGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGACATTTTTCTTGCCAAGATCCAGAAATGTCCTTGATCCGGTC  624

seq1  TAGTCTCTTAGCAAAAAAATGGCAGAATGGATTCTGTTTTCTGTTCTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTTAGCAAAAAAATGGCAGAATGGATTCTGTTTTCTGTTCTGCT  674

seq1  TTCTTGTTCTATTATCTAAAACTTTAGCACATAATTCCATAATAAATGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTCTATTATCTAAAACTTTAGCACATAATTCCATAATAAATGTC  724

seq1  TGCAAACTCACCTTCTTGTTCCTGAACTTTATTCTGAGAATTTCTTGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTCACCTTCTTGTTCCTGAACTTTATTCTGAGAATTTCTTGATG  774

seq1  CAAAATACTCAGAATCCACTGGCTTGAGCCATTGATTTGAACTTTCATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACTCAGAATCCACTGGCTTGAGCCATTGATTTGAACTTTCATAC  824

seq1  TTGAGTTAAATAAGCCTTCATTGCTACCATGGGCAATTACCTCTCCTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTAAATAAGCCTTCATTGCTACCATGGGCAATTACCTCTCCTCCA  874

seq1  ATTCATTAGTAACTAAAAATTTAATTCTTTTCTGATGGATTTAAATTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAGTAACTAAAAATTTAATTCTTTTCTGATGGATTTAAATTTTG  924

seq1  CTTGTAACCCACAAGAATAGTCAATAAGAATTTGTAGAGTAAATATATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACCCACAAGAATAGTCAATAAGAATTTGTAGAGTAAATATATGT  974

seq1  ATGCACAATTAAATAATTAATTATACATATTATATGTATATATACACAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAATTAAATAATTAATTATACATATTATATGTATATATACACAAA  1024

seq1  CACTATCCCTAACTTTCATGGGATGAAAATGCTATAAACACTGTCTTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCCTAACTTTCATGGGATGAAAATGCTATAAACACTGTCTTCCA  1074

seq1  CAGTCATTAAAAAACATTATTGAGAATTGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  CAGTCATTAAAAAACATTATTGAGAATTGAATTC  1108