BAC Information

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BAC

Clone NameB6Ng01-003L08
Chromosome16 (Build37)
Map Location 25,865,506 - 25,984,439
singlet/doubletdoublet
Overlap geneTrp63, LOC100043571, Leprel1
Upstream geneLpp, 5430420C16Rik
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L08.bB6Ng01-003L08.g
ACCDH841334DH841335
length1781,076
definitionDH841334|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L08, 5' end.DH841335|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,865,506 - 25,865,683)(25,983,350 - 25,984,439)
sequence
tttgtttttgtttttgttttgttttgttttttgttttttgatttgttttt
gttttttccactgcctttgcctttagaaagagaagacccagattcagtgc
tttgagctgcaaatcccttgtaaacactgaaagatctgagaaagtggaga
cagggaaggggtgtgggggtagaggagg
gaattcaggtcctttggaattgaacccaggtcctttggaagaggagacag
tgctcttaaccattaagagcagaaaatagtggttacaatagggatataaa
gtgaataaataaattaatttaagaaataattatgaaagcttgaaaaataa
taaagctaccatttaaaagatcttcttggtggatatttaaatattaatgc
cccacccacattagtggaagagtctaataacctctctaaattaagcagtt
gaaagaagtctttatgttatacaagtgatgaactttaaagattttgatag
attcccatgaggctgagatccaaagtcagaagcaaatatcttgtgcatga
ttcatttgcctgtcttgtttcagttttctagcatttcaatgtaaagtttt
gattttttaatgcattttaatgggttaaacaagccccatcttcagaaggc
actgggagtcagcctctgcactgtcctctctgcttcatgtgttgtcctct
gatcaagccggggcacagcgccctctgcagaccgccccttgctatagatt
aatgcaagttcttgtttttatttcatgaaacatttacctggttctttagg
ttgttaaggatttaaaatattttggctacctagataaatttaatatagat
taattcttttgatattctaactatttctgatttctttcgaaaatacatag
tccagggatcatggttattaaactattacttcaaatatatccaaagagtg
gactcccattgcaagaagaaaatggggtctggaagttcttgaaccttaac
ttattttctaaagaaaatgtttctgacaccttcattgtttctagtgatat
aggaaagtacaaatttagcaaccttacaagaggaaaagtatccaccctcc
tcatatatgttaagtgcaaatgctatgccatcactatttaacttctattt
ttctgaagcagctcatactattttctccttttcacataatatttttttct
ctttgatacccatgtatactttttccacttatctatatactgatatttta
tgcatatcatgtaggtggtgatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25865506_25865683
seq2: B6Ng01-003L08.b_52_229

seq1  TTTGTTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTTGATTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTTGATTTGTTTTT  50

seq1  GTTTTTTCCACTGCCTTTGCCTTTAGAAAGAGAAGACCCAGATTCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCCACTGCCTTTGCCTTTAGAAAGAGAAGACCCAGATTCAGTGC  100

seq1  TTTGAGCTGCAAATCCCTTGTAAACACTGAAAGATCTGAGAAAGTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGCAAATCCCTTGTAAACACTGAAAGATCTGAGAAAGTGGAGA  150

seq1  CAGGGAAGGGGTGTGGGGGTAGAGGAGG  178
      ||||||||||||||||||||||||||||
seq2  CAGGGAAGGGGTGTGGGGGTAGAGGAGG  178

seq1: chr16_25983350_25984439
seq2: B6Ng01-003L08.g_65_1140 (reverse)

seq1  TTTCATCAACACACTAACATGAATATTGCATAAAATATTCAGTAATTAAT  50
      |||||||| ||| || ||||| ||| ||||||||||| ||||||    ||
seq2  TTTCATCACCAC-CT-ACATG-ATA-TGCATAAAATA-TCAGTA---TAT  42

seq1  AGATAAGTGGAAAAAGTTATACATGGGTAATTCAAAGAGGAAAAAAATAT  100
      |||||||||||||||| ||||||||||||  ||||||| |||||||||||
seq2  AGATAAGTGGAAAAAG-TATACATGGGTA--TCAAAGA-GAAAAAAATAT  88

seq1  TATGTGAAAAGGAGAAAATAGTATGAGCTGCCTTCAGAAAAATAGAAGTT  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATGTGAAAAGGAGAAAATAGTATGAGCTG-CTTCAGAAAAATAGAAGTT  137

seq1  AAAATAGTGATGGCATAGCATTTGCACTTAACATATATGAGGAGGGTGGA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAATAGTGATGGCATAGCATTTGCACTTAACATATATGAGGAGGGTGGA  186

seq1  TACTTTTCCTCTTGTAAGGTTGCTAAATTTGTACTTTCCTATATCACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCCTCTTGTAAGGTTGCTAAATTTGTACTTTCCTATATCACTAG  236

seq1  AAACAATGAAGGTGTCAGAAACATTTTCTTTAGAAAATAAGTTAAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGAAGGTGTCAGAAACATTTTCTTTAGAAAATAAGTTAAGGTTC  286

seq1  AAGAACTTCCAGACCCCATTTTCTTCTTGCAATGGGAGTCCACTCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCCAGACCCCATTTTCTTCTTGCAATGGGAGTCCACTCTTTGG  336

seq1  ATATATTTGAAGTAATAGTTTAATAACCATGATCCCTGGACTATGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGAAGTAATAGTTTAATAACCATGATCCCTGGACTATGTATTT  386

seq1  TCGAAAGAAATCAGAAATAGTTAGAATATCAAAAGAATTAATCTATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGAAATCAGAAATAGTTAGAATATCAAAAGAATTAATCTATATTA  436

seq1  AATTTATCTAGGTAGCCAAAATATTTTAAATCCTTAACAACCTAAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCTAGGTAGCCAAAATATTTTAAATCCTTAACAACCTAAAGAAC  486

seq1  CAGGTAAATGTTTCATGAAATAAAAACAAGAACTTGCATTAATCTATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAATGTTTCATGAAATAAAAACAAGAACTTGCATTAATCTATAGC  536

seq1  AAGGGGCGGTCTGCAGAGGGCGCTGTGCCCCGGCTTGATCAGAGGACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCGGTCTGCAGAGGGCGCTGTGCCCCGGCTTGATCAGAGGACAAC  586

seq1  ACATGAAGCAGAGAGGACAGTGCAGAGGCTGACTCCCAGTGCCTTCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGCAGAGAGGACAGTGCAGAGGCTGACTCCCAGTGCCTTCTGAA  636

seq1  GATGGGGCTTGTTTAACCCATTAAAATGCATTAAAAAATCAAAACTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGCTTGTTTAACCCATTAAAATGCATTAAAAAATCAAAACTTTAC  686

seq1  ATTGAAATGCTAGAAAACTGAAACAAGACAGGCAAATGAATCATGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGCTAGAAAACTGAAACAAGACAGGCAAATGAATCATGCACAA  736

seq1  GATATTTGCTTCTGACTTTGGATCTCAGCCTCATGGGAATCTATCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGCTTCTGACTTTGGATCTCAGCCTCATGGGAATCTATCAAAAT  786

seq1  CTTTAAAGTTCATCACTTGTATAACATAAAGACTTCTTTCAACTGCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTTCATCACTTGTATAACATAAAGACTTCTTTCAACTGCTTAA  836

seq1  TTTAGAGAGGTTATTAGACTCTTCCACTAATGTGGGTGGGGCATTAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAGGTTATTAGACTCTTCCACTAATGTGGGTGGGGCATTAATAT  886

seq1  TTAAATATCCACCAAGAAGATCTTTTAAATGGTAGCTTTATTATTTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCCACCAAGAAGATCTTTTAAATGGTAGCTTTATTATTTTTCA  936

seq1  AGCTTTCATAATTATTTCTTAAATTAATTTATTTATTCACTTTATATCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCATAATTATTTCTTAAATTAATTTATTTATTCACTTTATATCCC  986

seq1  TATTGTAACCACTATTTTCTGCTCTTAATGGTTAAGAGCACTGTCTCCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAACCACTATTTTCTGCTCTTAATGGTTAAGAGCACTGTCTCCTC  1036

seq1  TTCCAAAGGACCTGGGTTCAATTCCAAAGGACCTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGACCTGGGTTCAATTCCAAAGGACCTGAATTC  1076