BAC Information

Click to search

BAC

Clone NameB6Ng01-003O03
Chromosome16 (Build37)
Map Location 10,162,817 - 10,293,185
singlet/doubletdoublet
Overlap gene4930517K11Rik, Atf7ip2, Emp2
Upstream geneGrin2a, LOC665291, LOC100042534
Downstream geneTekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003O03.bB6Ng01-003O03.g
ACCDH841458DH841459
length1,0681,025
definitionDH841458|Mus musculus domesticus DNA, BAC clone: B6Ng01-003O03, 5' end.DH841459|Mus musculus domesticus DNA, BAC clone: B6Ng01-003O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,292,103 - 10,293,185)(10,162,817 - 10,163,853)
sequence
gaattccaggctagcctggtctacagtgaatcctaggccagccaggacta
catactgagaccctgtctcaaagaacaaaaagcaaaagcaccaaaaaaat
gtatgtatgtgcacgtatggtttgtgatatgtgtgtatgcatgccactgt
acagacgtggcagtcagaggacaactttgtggaggtcagttctctccctt
cacttggaagtagggtctaggggttgaactcaggtcactaggtttccatt
gttggtgtgacaagtacttgtagatccatgtgtttgggctctgttgcttt
tgagacagggcctcgtgtaactcaggctggcctcttggactcaccatgtc
actaaggatttgcaattataacccctcctccacttcccaaatactgggat
tagaggcaggtgccccatgcttatgcagtggcgggacatcaaatcctggg
cctcctgcatgcaaagcaagaaatctacaggtctcagctctgaagtagag
agagatttgaattgaccttcactgcctctgctccacttagatccggcact
gcagagccctccagactttgctatggtgaaggctccaagcaggaagatgg
gaagagctgtcatacattttctgagatcctgttaaaagtcattgattcga
gttttgtcttgttgacaggtttggatttgtctctcgccatctttgtctcc
tcatctctctttggacttcctgctgcccccttggccttcactgccctgtg
aacatgttggtgattcttgccttcatcattgtcttccacatcgtgtccac
ggcactcctgttcatttctaccattgacaatgtaagttcctgtttcctgt
cagccactgaggagtccctaggttggggtggagtacagggagcaagcgac
tgtgatctggggtgtctttctctggaacatctcatcccaggcatcctgag
ctcagtctggatgagtctggaagccccaaggatgagcacagctgtctgca
gttctcagtttcacacatgtcatgtgagttagaaaactcttctgtctcta
tgaaatttattttattct
gaattcagaaaagtccttgtctacacctagatcctcttttattctagtga
tttgtggttaaagggtttcacagtgtggtttttaatccatttggagttag
ttttgatgcaaagcaaaaatctgctgtagagttaaggacacaatcaagtg
aaaaggatgcccagagacaaggagagaatctctgtctgctatatgtctat
tagagaattaatgactagaatatgttggttaattttaaaaccatgcttcc
tcctttgatgaggaccaaggccctcacttccagcttagctccgaatcact
tgcaacttgggaaagccaggagctgctgcctgcagacctcttcctcctgg
ccacctttgccaaaccgccatcaaccaccccgtcttttttctttctcctg
cccaccttagctccacagaagaaaaacactagactgctttactattttaa
aagttacgagatagcacaattgctgggcacagaaaactctagccctaaat
ttatcagctatcctaaatcagccacccattcaaaaaaatgggctgagtga
gttgggatttctgttgctgctttagagaccctgaccagagcagcttgtag
aggaaagagcttgttgcatttttcacttccaagtaagtctatcattgaga
taagtcaagacaggaagtgaaggcataaacctggaggctggatctgtagc
agaggcaatggagaagtgctgttaaccggtatgctctttgtggtttgctc
agtctgtttttgttttttttttgtttttgtttttttgtttgttgttgttt
ttgtttttgttttttttttttttgagacaggtttctctgtatagccctgg
ctgtcctggagctcactttgtagaccaggctggcctcgaactcagaatct
gcctgcctctgcctcccgagtgctggattaaaggcatgcgccaccacgcc
cagcttgctcagtctgttttaacatataatttagacgagagcccaggggt
gacaccacctatagtgggcactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10292103_10293185
seq2: B6Ng01-003O03.b_45_1112 (reverse)

seq1  AGAATAAAATAAAAATATTCAATAGAGAAACAGAAGAGTTTTCTAACTCC  50
      ||||||||||||    |||  ||||||  ||||||||||||||||||| |
seq2  AGAATAAAATAA----ATTTCATAGAG--ACAGAAGAGTTTTCTAACT-C  43

seq1  ACATGACAATGGTGTG-GAAACTGAGAACTGCAGGACAGCTGTGCTCATC  99
      ||||||||    |||| |||||||||||||||| ||||||||||||||||
seq2  ACATGACA----TGTGTGAAACTGAGAACTGCA-GACAGCTGTGCTCATC  88

seq1  CTTGGGGGCTTCCAGGACCTCATCCAGACCTGAGCTCAGGATGCCTGGGA  149
      ||| |||||||||||   |||||||||| |||||||||||||||||||||
seq2  CTT-GGGGCTTCCAG--ACTCATCCAGA-CTGAGCTCAGGATGCCTGGGA  134

seq1  TGAGATGTTCCAGAGAAAGGACACCCCAGATCACAGTCGCTTGCTCCCTG  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGATGTTCCAGAGAAA-GACACCCCAGATCACAGTCGCTTGCTCCCTG  183

seq1  TACTCCACCCCAACCTAGGGACTCCTCAGTGGCTGACAGG-AACAGGAAC  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACTCCACCCCAACCTAGGGACTCCTCAGTGGCTGACAGGAAACAGGAAC  233

seq1  TTACATTGTCAATGGTAGAAATGAACAGGAGTGCCGTGGACACGATGTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTCAATGGTAGAAATGAACAGGAGTGCCGTGGACACGATGTGG  283

seq1  AAGACAATGATGAAGGCAAGAATCACCAACATGTTCACAGGGCAGTGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATGATGAAGGCAAGAATCACCAACATGTTCACAGGGCAGTGAAG  333

seq1  GCCAAGGGGGCAGCAGGAAGTCCAAAGAGAGATGAGGAGACAAAGATGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGGGCAGCAGGAAGTCCAAAGAGAGATGAGGAGACAAAGATGGC  383

seq1  GAGAGACAAATCCAAACCTGTCAACAAGACAAAACTCGAATCAATGACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAAATCCAAACCTGTCAACAAGACAAAACTCGAATCAATGACTT  433

seq1  TTAACAGGATCTCAGAAAATGTATGACAGCTCTTCCCATCTTCCTGCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGATCTCAGAAAATGTATGACAGCTCTTCCCATCTTCCTGCTTG  483

seq1  GAGCCTTCACCATAGCAAAGTCTGGAGGGCTCTGCAGTGCCGGATCTAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCACCATAGCAAAGTCTGGAGGGCTCTGCAGTGCCGGATCTAAG  533

seq1  TGGAGCAGAGGCAGTGAAGGTCAATTCAAATCTCTCTCTACTTCAGAGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGAGGCAGTGAAGGTCAATTCAAATCTCTCTCTACTTCAGAGCT  583

seq1  GAGACCTGTAGATTTCTTGCTTTGCATGCAGGAGGCCCAGGATTTGATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGTAGATTTCTTGCTTTGCATGCAGGAGGCCCAGGATTTGATGT  633

seq1  CCCGCCACTGCATAAGCATGGGGCACCTGCCTCTAATCCCAGTATTTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCACTGCATAAGCATGGGGCACCTGCCTCTAATCCCAGTATTTGGG  683

seq1  AAGTGGAGGAGGGGTTATAATTGCAAATCCTTAGTGACATGGTGAGTCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGAGGGGTTATAATTGCAAATCCTTAGTGACATGGTGAGTCCA  733

seq1  AGAGGCCAGCCTGAGTTACACGAGGCCCTGTCTCAAAAGCAACAGAGCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGCCTGAGTTACACGAGGCCCTGTCTCAAAAGCAACAGAGCCC  783

seq1  AAACACATGGATCTACAAGTACTTGTCACACCAACAATGGAAACCTAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGGATCTACAAGTACTTGTCACACCAACAATGGAAACCTAGTG  833

seq1  ACCTGAGTTCAACCCCTAGACCCTACTTCCAAGTGAAGGGAGAGAACTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTTCAACCCCTAGACCCTACTTCCAAGTGAAGGGAGAGAACTGA  883

seq1  CCTCCACAAAGTTGTCCTCTGACTGCCACGTCTGTACAGTGGCATGCATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAAAGTTGTCCTCTGACTGCCACGTCTGTACAGTGGCATGCATA  933

seq1  CACACATATCACAAACCATACGTGCACATACATACATTTTTTTGGTGCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATCACAAACCATACGTGCACATACATACATTTTTTTGGTGCTT  983

seq1  TTGCTTTTTGTTCTTTGAGACAGGGTCTCAGTATGTAGTCCTGGCTGGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGTTCTTTGAGACAGGGTCTCAGTATGTAGTCCTGGCTGGCC  1033

seq1  TAGGATTCACTGTAGACCAGGCTAGCCTGGAATTC  1083
      |||||||||||||||||||||||||||||||||||
seq2  TAGGATTCACTGTAGACCAGGCTAGCCTGGAATTC  1068

seq1: chr16_10162817_10163853
seq2: B6Ng01-003O03.g_68_1092

seq1  GAATTCAGAAAAGTCCTTGTCTACACCTAGATCCTCTTTTATTCTAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAGTCCTTGTCTACACCTAGATCCTCTTTTATTCTAGTGA  50

seq1  TTTGTGGTTAAAGGGTTTCACAGTGTGGTTTTTAATCCATTTGGAGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTAAAGGGTTTCACAGTGTGGTTTTTAATCCATTTGGAGTTAG  100

seq1  TTTTGATGCAAAGCAAAAATCTGCTGTAGAGTTAAGGACACAATCAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGCAAAGCAAAAATCTGCTGTAGAGTTAAGGACACAATCAAGTG  150

seq1  AAAAGGATGCCCAGAGACAAGGAGAGAATCTCTGTCTGCTATATGTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGCCCAGAGACAAGGAGAGAATCTCTGTCTGCTATATGTCTAT  200

seq1  TAGAGAATTAATGACTAGAATATGTTGGTTAATTTTAAAACCATGCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTAATGACTAGAATATGTTGGTTAATTTTAAAACCATGCTTCC  250

seq1  TCCTTTGATGAGGACCAAGGCCCTCACTTCCAGCTTAGCTCCGAATCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGATGAGGACCAAGGCCCTCACTTCCAGCTTAGCTCCGAATCACT  300

seq1  TGCAACTTGGGAAAGCCAGGAGCTGCTGCCTGCAGACCTCTTCCTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTGGGAAAGCCAGGAGCTGCTGCCTGCAGACCTCTTCCTCCTGG  350

seq1  CCACCTTTGCCAAACCGCCATCAACCACCCCGTCTTTTTTCTTTCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTGCCAAACCGCCATCAACCACCCCGTCTTTTTTCTTTCTCCTG  400

seq1  CCCACCTTAGCTCCACAGAAGAAAAACACTAGACTGCTTTACTATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTAGCTCCACAGAAGAAAAACACTAGACTGCTTTACTATTTTAA  450

seq1  AAGTTACGAGATAGCACAATTGCTGGGCACAGAAAACTCTAGCCCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACGAGATAGCACAATTGCTGGGCACAGAAAACTCTAGCCCTAAAT  500

seq1  TTATCAGCTATCCTAAATCAGCCACCCATTCAAAAAAATGGGCTGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCTATCCTAAATCAGCCACCCATTCAAAAAAATGGGCTGAGTGA  550

seq1  GTTGGGATTTCTGTTGCTGCTTTAGAGACCCTGACCAGAGCAGCTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATTTCTGTTGCTGCTTTAGAGACCCTGACCAGAGCAGCTTGTAG  600

seq1  AGGAAAGAGCTTGTTGCATTTTTCACTTCCAAGTAAGTCTATCATTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGCTTGTTGCATTTTTCACTTCCAAGTAAGTCTATCATTGAGA  650

seq1  TAAGTCAAGACAGGAAGTGAAGGCATAAACCTGGAGGCTGGATCTGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAAGACAGGAAGTGAAGGCATAAACCTGGAGGCTGGATCTGTAGC  700

seq1  AGAGGCAATGGAGAAGTGCTGTTAACCGGTATGCTCTTTGTGGTTTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAATGGAGAAGTGCTGTTAACCGGTATGCTCTTTGTGGTTTGCTC  750

seq1  AGTCTGTTTTTGTTTTTTTTTTGTTTTTGTTTTTTTTGTTTGTTTGTTTG  800
      ||||||||||||||||||||||||||||| |||||||||||| |||||  
seq2  AGTCTGTTTTTGTTTTTTTTTTGTTTTTG-TTTTTTTGTTTG-TTGTT--  796

seq1  TTTTTTGTTTTTGTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGC  850
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTTGTTTTTGTTTTTTTTTTTTTTGAGACA-GGTTTCTCTGTATAGC  845

seq1  CCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  895

seq1  AAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCA  950
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  -AATCTGCCTGCCTCTGCCTCCCGAGTGCT-GGATTAAAGGCATGCGCCA  943

seq1  CCACGCCCAGCTTGCTCAGTCTGTTTTAACATATAATTTAGGAACAGAGA  1000
      |||||||||||||||||||||||||||||||||||||||||  || ||| 
seq2  CCACGCCCAGCTTGCTCAGTCTGTTTTAACATATAATTTAG--AC-GAG-  989

seq1  AGCCCAGGGGGTGACACCACCTATAGTGGGCACTCTC  1037
      |||||| ||||||||||||||||||||||||||||||
seq2  AGCCCA-GGGGTGACACCACCTATAGTGGGCACTCTC  1025