BAC Information

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BAC

Clone NameB6Ng01-004L09
Chromosome16 (Build37)
Map Location 36,969,112 - 37,159,104
singlet/doubletdoublet
Overlap geneFbxo40, LOC100043252, Polq, Stxbp5l
Upstream geneParp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L09.bB6Ng01-004L09.g
ACCDH842048DH842049
length1,1431,143
definitionDH842048|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L09, 5' end.DH842049|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,157,949 - 37,159,104)(36,969,112 - 36,970,280)
sequence
gaattcatttatcactttaaggataaaattgacagttaagtgtatcttcc
taaatggggtagacatattattttgctatgaaaaagtttaaagatatttc
ttcagtagtaattctccacaaaagatcttagaccgttccctccccccatt
aaattcactaaaatcaagtgttaatagtcactgtaagcctattgtaataa
gataatctagcacttagggaaaacagtaattattttatagattttctgtg
ttctcaaagtctcttatactttaatatactacgaataacagataaaagta
caggctatcaagtatttacttgaggtaatgaaagagaatagagtgtagat
tgggagcaatagaatccagtgagccaactggaatttgattctcactattc
aaaataatatgttttttatattggtttttcatttactaaagtattcaact
agaattttcagtttccacagtaagacattatgctatccactgaagaaaaa
ttaagaacagaaagtaaactaataatcacaaaggaaacagtagtcaactt
tcaaaaataattatactaaaaatatttttaaatcaatactttctaaagct
atgaaacccctttgcattcagagtgctgtgtaacttgtgtcctgtataag
cgcatcttccaagaggggtagataggtactaatatgcagtcctaccccag
tcacctgagaggagtataactttctaaagaaagtagtatgtttttcccat
aaagagttctaaactcaacaaatctttaatgatagggttatatcttccca
agaccatgagcctttttccaatcctttgcctgggagtgcatcctcttcta
tgctcccatcaggtcccaagactccttctatttctgttattacaatcaac
cctataactcatatttcccatagtctacaaaaaccttattaagtaaccaa
gtccacaaacaccaggatgactgatatttatttttattaaatatatcttt
ataaatgtcataaaaatgtgttgtcataaaaaatatcaaagcaggacact
ctgtttttctattctgatctaaatcagtggtgcatctatatctgcagcat
ctcatagaactcttaatattaaattctatatttagaggcaaag
gaattcaggcttttcccatcacggccagagagatggtcgctcttccattt
ctcactcagctccggagcaacctctggtttgatggcaaaggtcttcagct
cctggctatagatcacttttgctttttgtccaggggggcggaagtggttc
tgaacaaatgtacatcccaagtaggctagggggcatcgatgctggaacca
gccatcgagactcgactggatgtcagtgtggacattcttgaagtgcaggg
gaaattcatcccttcggaagaatttgttgcaggtgaacgtaaaagctgag
ctgcttttgttgtgtcttctagtcacacactcgctgtggagctccacgtg
caggcccccgggttgggcagtgcctaggagatcagccaacactgtctctg
aggaaaactgttctggctcaaagttgtatgtttgggtggcaaggtccata
aagagtccatcgatgctcctggattcagagatgacatggcctttgagttc
tctttccaaagcacactggagggtggtcttgatgagatcagatttgggca
ggtcctccacagagatgcccagatcagaagtgtccacagccttgtgttca
cttggtctgcatttcaacatggcatctcccaagcgagctcgcttcccgca
gtagctcacgggaatcttgaaggtataaaccgttttcacttcttgagcct
ctaggttgccataaacaaagtccctctccttgggcgtacaagcaggcatc
tgcccaaagtggatgagcatccgcccgttgtgcaccagatacatgttata
gtctttggcatccacggctgtttttagtctttccagaacaccatcttgcc
agggagcaagccctgtcatctccatggtagcgggaagttcctgggacttc
tggctttcctgtggtcctctcctttcggcagaccctctgcatcccctatg
cgacattactggagcactgctcttccagccacatcccattcttgtcttcc
ctcttcccaaggactgtaacagagctgcgtgctcttgctgacaactttcc
acttgcaaactgtcaggtcatccttcttgggtttgcagtgcatctcgttc
ctcctgactgaactccatcattggctactggttgccgcaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37157949_37159104
seq2: B6Ng01-004L09.b_47_1189 (reverse)

seq1  CTTTGCCCTCTAAATATAGATATATATATATAGAGTTTCTATGAAGATGC  50
      ||||| ||||||||||||||  |  ||||  |||| ||||||| ||||||
seq2  CTTTG-CCTCTAAATATAGAATTTAATATTAAGAG-TTCTATG-AGATGC  47

seq1  TGCAGGATATTAGATGCA-CACTGATTTTAGATCAAGAATTAGAAAAACA  99
      |||| |||| |||||||| |||||| |||||||| |||| ||||||||||
seq2  TGCA-GATA-TAGATGCACCACTGA-TTTAGATC-AGAA-TAGAAAAACA  92

seq1  GAGTTGGTTCTTGCTTTTGAATATTTTTATGACACCACATTTTTATGACA  149
      ||||    || ||| |||||   ||||||||||| |||||||||||||||
seq2  GAGT---GTCCTGC-TTTGATATTTTTTATGACAACACATTTTTATGACA  138

seq1  TTTTAATAAAGATATATTTAATAAAAATAAATATCAGTCATCCTGGTGTT  199
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT--ATAAAGATATATTTAATAAAAATAAATATCAGTCATCCTGGTGTT  186

seq1  TGTGGACTTGGTTACTTAATAAGGTTTTTGTAGACTATGGGAAATATGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTTGGTTACTTAATAAGGTTTTTGTAGACTATGGGAAATATGAG  236

seq1  TTATAGGGTTGATTGTAATAACAGAAATAGAAGGAGTCTTGGGACCTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGTTGATTGTAATAACAGAAATAGAAGGAGTCTTGGGACCTGAT  286

seq1  GGGAGCATAGAAGAGGATGCACTCCCAGGCAAAGGATTGGAAAAAGGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCATAGAAGAGGATGCACTCCCAGGCAAAGGATTGGAAAAAGGCTC  336

seq1  ATGGTCTTGGGAAGATATAACCCTATCATTAAAGATTTGTTGAGTTTAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTGGGAAGATATAACCCTATCATTAAAGATTTGTTGAGTTTAGA  386

seq1  ACTCTTTATGGGAAAAACATACTACTTTCTTTAGAAAGTTATACTCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTATGGGAAAAACATACTACTTTCTTTAGAAAGTTATACTCCTCT  436

seq1  CAGGTGACTGGGGTAGGACTGCATATTAGTACCTATCTACCCCTCTTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACTGGGGTAGGACTGCATATTAGTACCTATCTACCCCTCTTGGA  486

seq1  AGATGCGCTTATACAGGACACAAGTTACACAGCACTCTGAATGCAAAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGCTTATACAGGACACAAGTTACACAGCACTCTGAATGCAAAGGG  536

seq1  GTTTCATAGCTTTAGAAAGTATTGATTTAAAAATATTTTTAGTATAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAGCTTTAGAAAGTATTGATTTAAAAATATTTTTAGTATAATTA  586

seq1  TTTTTGAAAGTTGACTACTGTTTCCTTTGTGATTATTAGTTTACTTTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAAGTTGACTACTGTTTCCTTTGTGATTATTAGTTTACTTTCTG  636

seq1  TTCTTAATTTTTCTTCAGTGGATAGCATAATGTCTTACTGTGGAAACTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTTTTCTTCAGTGGATAGCATAATGTCTTACTGTGGAAACTGA  686

seq1  AAATTCTAGTTGAATACTTTAGTAAATGAAAAACCAATATAAAAAACATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGTTGAATACTTTAGTAAATGAAAAACCAATATAAAAAACATA  736

seq1  TTATTTTGAATAGTGAGAATCAAATTCCAGTTGGCTCACTGGATTCTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAATAGTGAGAATCAAATTCCAGTTGGCTCACTGGATTCTATT  786

seq1  GCTCCCAATCTACACTCTATTCTCTTTCATTACCTCAAGTAAATACTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAATCTACACTCTATTCTCTTTCATTACCTCAAGTAAATACTTGA  836

seq1  TAGCCTGTACTTTTATCTGTTATTCGTAGTATATTAAAGTATAAGAGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTACTTTTATCTGTTATTCGTAGTATATTAAAGTATAAGAGACT  886

seq1  TTGAGAACACAGAAAATCTATAAAATAATTACTGTTTTCCCTAAGTGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACACAGAAAATCTATAAAATAATTACTGTTTTCCCTAAGTGCTA  936

seq1  GATTATCTTATTACAATAGGCTTACAGTGACTATTAACACTTGATTTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTTATTACAATAGGCTTACAGTGACTATTAACACTTGATTTTAG  986

seq1  TGAATTTAATGGGGGGAGGGAACGGTCTAAGATCTTTTGTGGAGAATTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAATGGGGGGAGGGAACGGTCTAAGATCTTTTGTGGAGAATTAC  1036

seq1  TACTGAAGAAATATCTTTAAACTTTTTCATAGCAAAATAATATGTCTACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGAAATATCTTTAAACTTTTTCATAGCAAAATAATATGTCTACC  1086

seq1  CCATTTAGGAAGATACACTTAACTGTCAATTTTATCCTTAAAGTGATAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGGAAGATACACTTAACTGTCAATTTTATCCTTAAAGTGATAAA  1136

seq1  TGAATTC  1156
      |||||||
seq2  TGAATTC  1143

seq1: chr16_36969112_36970280
seq2: B6Ng01-004L09.g_67_1209

seq1  GAATTCAGGCTTTTCCCATCACGGCCAGAGAGATGGTCGCTCTTCCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTTTCCCATCACGGCCAGAGAGATGGTCGCTCTTCCATTT  50

seq1  CTCACTCAGCTCCGGAGCAACCTCTGGTTTGATGGCAAAGGTCTTCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGCTCCGGAGCAACCTCTGGTTTGATGGCAAAGGTCTTCAGCT  100

seq1  CCTGGCTATAGATCACTTTTGCTTTTTGTCCAGGGGGGCGGAAGTGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTATAGATCACTTTTGCTTTTTGTCCAGGGGGGCGGAAGTGGTTC  150

seq1  TGAACAAATGTACATCCCAAGTAGGCTAGGGGGCATCGATGCTGGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAATGTACATCCCAAGTAGGCTAGGGGGCATCGATGCTGGAACCA  200

seq1  GCCATCGAGACTCGACTGGATGTCAGTGTGGACATTCTTGAAGTGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGAGACTCGACTGGATGTCAGTGTGGACATTCTTGAAGTGCAGGG  250

seq1  GAAATTCATCCCTTCGGAAGAATTTGTTGCAGGTGAACGTAAAAGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATCCCTTCGGAAGAATTTGTTGCAGGTGAACGTAAAAGCTGAG  300

seq1  CTGCTTTTGTTGTGTCTTCTAGTCACACACTCGCTGTGGAGCTCCACGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGTTGTGTCTTCTAGTCACACACTCGCTGTGGAGCTCCACGTG  350

seq1  CAGGCCCCCGGGTTGGGCAGTGCCTAGGAGATCAGCCAACACTGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCCGGGTTGGGCAGTGCCTAGGAGATCAGCCAACACTGTCTCTG  400

seq1  AGGAAAACTGTTCTGGCTCAAAGTTGTATGTTTGGGTGGCAAGGTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTGTTCTGGCTCAAAGTTGTATGTTTGGGTGGCAAGGTCCATA  450

seq1  AAGAGTCCATCGATGCTCCTGGATTCAGAGATGACATGGCCTTTGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCCATCGATGCTCCTGGATTCAGAGATGACATGGCCTTTGAGTTC  500

seq1  TCTTTCCAAAGCACACTGGAGGGTGGTCTTGATGAGATCAGATTTGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAAAGCACACTGGAGGGTGGTCTTGATGAGATCAGATTTGGGCA  550

seq1  GGTCCTCCACAGAGATGCCCAGATCAGAAGTGTCCACAGCCTTGTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCACAGAGATGCCCAGATCAGAAGTGTCCACAGCCTTGTGTTCA  600

seq1  CTTGGTCTGCATTTCAACATGGCATCTCCCAAGCGAGCTCGCTTCCCGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTGCATTTCAACATGGCATCTCCCAAGCGAGCTCGCTTCCCGCA  650

seq1  GTAGCTCACGGGAATCTTGAAGGTATAAACCGTTTTCACTTCTTGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCACGGGAATCTTGAAGGTATAAACCGTTTTCACTTCTTGAGCCT  700

seq1  CTAGGTTGCCATAAACAAAGTCCCTCTCCTTGGGCGTACAAGCAGGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGCCATAAACAAAGTCCCTCTCCTTGGGCGTACAAGCAGGCATC  750

seq1  TGCCCAAAGTGGATGAGCATCCGCCCGTTGTGCACCAGATACATGTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAAGTGGATGAGCATCCGCCCGTTGTGCACCAGATACATGTTATA  800

seq1  GTCTTTGGCATCCACGGCTGTTTTTAGTCTTTCCAGAACACCATCTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGCATCCACGGCTGTTTTTAGTCTTTCCAGAACACCATCTTGCC  850

seq1  AGGGAGCAAGCCCTGTCATCTCCATGGTAGCGGGAAGTTCCTGGGACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCAAGCCCTGTCATCTCCATGGTAGCGGGAAGTTCCTGGGACTTC  900

seq1  TGGCTTTCCTGTGGTCCTCTCCTTTCGGCAGAACCCTCTGCATCCCCTAT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGCTTTCCTGTGGTCCTCTCCTTTCGGCAG-ACCCTCTGCATCCCCTAT  949

seq1  GCGAACATTACTGGAGCACTGCTCTTTCCCAGCCACATCCCCATTCTTGT  1000
      ||| ||||||||||||||||||||||  |||||||||| |||||||||||
seq2  GCG-ACATTACTGGAGCACTGCTCTT--CCAGCCACAT-CCCATTCTTGT  995

seq1  CTTCACTCTTCCCCAAGGAACCTGTTAAAACAGAGGCTGCGTGCTCCTTG  1050
      |||| ||||| ||||||||  ||||   |||||| |||||||||| ||||
seq2  CTTCCCTCTT-CCCAAGGA--CTGT---AACAGA-GCTGCGTGCT-CTTG  1037

seq1  CTGAACATACTTTCCCACTTGCCAAACTTGTCCAGGTCCATCCCTTCTTT  1100
      ||| ||| ||||| ||||||| ||||| ||| ||||| ||| ||||||| 
seq2  CTG-ACA-ACTTT-CCACTTG-CAAAC-TGT-CAGGT-CAT-CCTTCTTG  1079

seq1  GGTTTTTGCCAGTGCATCTCGTTCCTCCTGACTGAGCTCCATCATTTGCC  1150
      |||||    |||||||||||||||||||||||||| |||||||| ||| |
seq2  GGTTT---GCAGTGCATCTCGTTCCTCCTGACTGAACTCCATCA-TTGGC  1125

seq1  TACTGGTTGCCGGCAAACA  1169
      ||||||||||| |||||||
seq2  TACTGGTTGCC-GCAAACA  1143