BAC Information

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BAC

Clone NameB6Ng01-004M08
Chromosome16 (Build37)
Map Location 97,144,199 - 97,269,586
singlet/doubletdoublet
Overlap geneDscam
Upstream geneDscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M08.bB6Ng01-004M08.g
ACCDH842094DH842095
length8381,137
definitionDH842094|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M08, 5' end.DH842095|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,144,199 - 97,145,033)(97,268,468 - 97,269,586)
sequence
gaattctttccagccatgaatgacattatgctacttgtaggaatacgaat
acaaactgatataatgagattaagtgaaagaagacagtctcagaccaata
acatatttcccccatatggctacataaagcatgtatgctttgatttaata
aaaatagaaatgaaattgtctacagaaacaaacaggtttaatgggaggga
gagggttgagaaaagggttggggcaaagaaactgggcaggatatactcaa
tgtgcaatctatgtctactgatttaaaaggtagaaacttgagctccagag
acacataggaatacagcaagctagctcaccatcagcatacatgaagtgta
gacccacactgattcaggcagctgagtccactaactgctagaaattcaca
acagctttaaagtagcatctcccttttaattttgcaaaggaaaattgata
gtatgaagtcatttactgttgagtattcttcagtatatctgcatgctcaa
aatgtctggtgatttttaagtagtttattttgttatttgataaggatggg
aaaccttggggaatgtattcataacatccggaaggaaaagtgaaatctga
tgagttataagagaaaagtctctgttcacgtctttgcttggattcaatgc
acccagattcctacctctcagacttggctttcaggcttatcagagaacgt
ttctaggaggcaaatgttgccttgagttccctctgttggtgttactatgc
ctttttaatgctgcatcctgtgtagagggattctcaggctattattaaga
gaactgacccttgctaaggtttgggagttgtttcgggt
gaattcactctattgacatatcaaaagtaaaagcaatgaaattatttcaa
gtggtgcagaaaattattaacaagtcccacatttcatgattatggaacag
aaatcccagaagagttggagtaagagataattttttcatcctaacagaat
caaaaattcaggcctacttaacaccagaaatgaaggccaaagagtaaatg
ctttcccatgagtcaggagcaataccagattctactctgtttcaacttca
ttagaagttgtagacaggactgtgcgacaatgttgcagagatagaagttt
aagatggagacccagctctgtgaacaaagagcttactatgcaattatgag
gacaggtgttgggatccacactacacaccccacatggagggtgtggtggc
cacctgttattctactggggacatgaagtgggatctctccctctgttaag
aagatagaggttgattgagaaagactccatatctcagcctcaggcctcca
catgcctgtgcacacacatgaatatacaccaaacacccaaataaaataca
cctttctctacccctcaaaattaaaaaaatactcatatttttgataatat
aattatgaatgtggaaattctgatgtgatctattaaaaaaaactactggg
gctaataagtggatctgttaaaaccagagtttttaactcaacactcacat
atactcatgaatacatacacactcacaagtacacacacactctcacacac
ttatgaatacatatacacactcatgaatacacacactcatacacacacat
ttcatcagacaatttaaaagtactatttacactggagagatggctaagag
gttaagagcatttggttactcttccaaaggacccaggttcaattctcagc
acacgtgcatcttcacagtgtctgtacctccagtttcaggagatctgaca
tcttcacacggactatattgcaggcaaaacaccaatgcccataaaggact
atttacatagatccacagccataatacttagaataatcttccacactaaa
gagacagaatcaaagagaatattgttttcatgagtggaggttcattgttt
agaaggaacagaactaaacagagattctctcagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97144199_97145033
seq2: B6Ng01-004M08.b_44_880

seq1  GAATTCTTTCCAGCCATGAATGACATTATGCTACTTGTAGGAATACGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAGCCATGAATGACATTATGCTACTTGTAGGAATACGAAT  50

seq1  ACAAACTGATATAATGAGATTAAGTGAAAGAAGACAGTCTCAGACCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGATATAATGAGATTAAGTGAAAGAAGACAGTCTCAGACCAATA  100

seq1  ACATATTTCCCCCATATGGCTACATAAAGCATGTATGCTTTGATTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTCCCCCATATGGCTACATAAAGCATGTATGCTTTGATTTAATA  150

seq1  AAAATAGAAATGAAATTGTCTACAGAAACAAACAGGTTTAATGGGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAATGAAATTGTCTACAGAAACAAACAGGTTTAATGGGAGGGA  200

seq1  GAGGGTTGAGAAAAGGGTTGGGGCAAAGAAACTGGGCAGGATATACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTGAGAAAAGGGTTGGGGCAAAGAAACTGGGCAGGATATACTCAA  250

seq1  TGTGCAATCTATGTCTACTGATTTAAAAGGTAGAAACTTGAGCTCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATCTATGTCTACTGATTTAAAAGGTAGAAACTTGAGCTCCAGAG  300

seq1  ACACATAGGAATACAGCAAGCTAGCTCACCATCAGCATACATGAAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGGAATACAGCAAGCTAGCTCACCATCAGCATACATGAAGTGTA  350

seq1  GACCCACACTGATTCAGGCAGCTGAGTCCACTAACTGCTAGAAATTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACACTGATTCAGGCAGCTGAGTCCACTAACTGCTAGAAATTCACA  400

seq1  ACAGCTTTAAAGTAGCATCTCCCTTTTAATTTTGCAAAGGAAAATTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAAAGTAGCATCTCCCTTTTAATTTTGCAAAGGAAAATTGATA  450

seq1  GTATGAAGTCATTTACTGTTGAGTATTCTTCAGTATATCTGCATGCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGTCATTTACTGTTGAGTATTCTTCAGTATATCTGCATGCTCAA  500

seq1  AATGTCTGGTGATTTTTAAGTAGTTTATTTTGTTATTTGATAAGGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGGTGATTTTTAAGTAGTTTATTTTGTTATTTGATAAGGATGGG  550

seq1  AAACCTTGGGGAATGTATTCATAACATCCGGAAGGAAAAGTGAAATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGGGGAATGTATTCATAACATCCGGAAGGAAAAGTGAAATCTGA  600

seq1  TGAGTTATAAGAGAAAAGTCTCTGTTCACGTCTTTGCTTGGATTCAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATAAGAGAAAAGTCTCTGTTCACGTCTTTGCTTGGATTCAATGC  650

seq1  ACCCAGATTCCTACCTCTCAGACTTGGCTTTCAGGCTTATCAGAGAACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATTCCTACCTCTCAGACTTGGCTTTCAGGCTTATCAGAGAACGT  700

seq1  TTCTAGGAGGCAAATGTTGCCTTGAGTTCCCTCTGTTGGTGTTACTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGGCAAATGTTGCCTTGAGTTCCCTCTGTTGGTGTTACTATGC  750

seq1  C-TTTTAATGCTGCATCCTGTGTAGAGGGATTCTCAGGCTATTATTAAGA  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATGCTGCATCCTGTGTAGAGGGATTCTCAGGCTATTATTAAGA  800

seq1  GAACTGACCCTTGCTAAGGTTT-GGAGTTGTTTCGGG  835
      |||||||||||||||||||||| ||||||||||||||
seq2  GAACTGACCCTTGCTAAGGTTTGGGAGTTGTTTCGGG  837

seq1: chr16_97268468_97269586
seq2: B6Ng01-004M08.g_90_1204 (reverse)

seq1  TCAGCTGAGA-ATTCTCTGTTTAGTTCTGTTCCCTCTTAACAATGAACCT  49
      |||||||||| | |||||||||||||||||||| ||| ||||||||||||
seq2  TCAGCTGAGAGAATCTCTGTTTAGTTCTGTTCCTTCTAAACAATGAACCT  50

seq1  CCACTCATGGAAAACATATTTCTCCTTTGATTTCTGTCTCTTTTAGTGTG  99
      |||||||| |||||||   |||| |||||| ||||||||| |||||||||
seq2  CCACTCAT-GAAAACAATATTCT-CTTTGA-TTCTGTCTC-TTTAGTGTG  96

seq1  --AGATTTATTCTTAAGTATTTATTGGCTGTGATTCTATTGTAAATAGTC  147
        ||| |||||| ||||||||   ||||||||  |||| |||||||||||
seq2  GAAGA-TTATTC-TAAGTATT--ATGGCTGTGGATCTA-TGTAAATAGTC  141

seq1  CTTTTATGTGCATTGGTGTTTTGCTTGCATATAT-GTCTGTGTGAAGATG  196
      | |||||| ||||||||||||||| |||| |||| ||| |||||||||||
seq2  C-TTTATGGGCATTGGTGTTTTGCCTGCA-ATATAGTCCGTGTGAAGATG  189

seq1  TCAGGTCTCCTGAAACTGGA-GTACAGACACTTGTG-AGGTGCACGTGTG  244
      |||| ||||||||||||||| |||||||||| |||| || ||||||||||
seq2  TCAGATCTCCTGAAACTGGAGGTACAGACAC-TGTGAAGATGCACGTGTG  238

seq1  CTGAGAATTGAACCTGGGTCCTTTGGAAGAGTAACC-AATGCTCTTAACC  293
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGAGAATTGAACCTGGGTCCTTTGGAAGAGTAACCAAATGCTCTTAACC  288

seq1  TCTTAGCCATCTCTCCAGTGTAAATAGTACTTTTAAATTGTCTGATG-AA  342
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTAGCCATCTCTCCAGTGTAAATAGTACTTTTAAATTGTCTGATGAAA  338

seq1  TGTGTGTGTATGAGTGTGTGTATTCATGAGTGTGTATATGTATTCATAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGAGTGTGTGTATTCATGAGTGTGTATATGTATTCATAAG  388

seq1  TGTGTGAGAGTGTGTGTGTACTTGTGAGTGTGTATGTATTCATGAGTATA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGAGTGTGTGTGTACTTGTGAGTGTGTATGTATTCATGAGTATA  438

seq1  TGTGAGTGTTGAGTTAAAAACTCTGGTTTTAACAGATCCACTTATTAGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTTGAGTTAAAAACTCTGGTTTTAACAGATCCACTTATTAGCC  488

seq1  CCAGTAGTTTTTTTTAATAGATCACATCAGAATTTCCACATTCATAATTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGTTTTTTTTAATAGATCACATCAGAATTTCCACATTCATAATTA  538

seq1  TATTATCAAAAATATGAGTATTTTTTTAATTTTGAGGGGTAGAGAAAGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCAAAAATATGAGTATTTTTTTAATTTTGAGGGGTAGAGAAAGGT  588

seq1  GTATTTTATTTGGGTGTTTGGTGTATATTCATGTGTGTGCACAGGCATGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATTTGGGTGTTTGGTGTATATTCATGTGTGTGCACAGGCATGT  638

seq1  GGAGGCCTGAGGCTGAGATATGGAGTCTTTCTCAATCAACCTCTATCTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTGAGGCTGAGATATGGAGTCTTTCTCAATCAACCTCTATCTTC  688

seq1  TTAACAGAGGGAGAGATCCCACTTCATGTCCCCAGTAGAATAACAGGTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGGGAGAGATCCCACTTCATGTCCCCAGTAGAATAACAGGTGG  738

seq1  CCACCACACCCTCCATGTGGGGTGTGTAGTGTGGATCCCAACACCTGTCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACCCTCCATGTGGGGTGTGTAGTGTGGATCCCAACACCTGTCC  788

seq1  TCATAATTGCATAGTAAGCTCTTTGTTCACAGAGCTGGGTCTCCATCTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTGCATAGTAAGCTCTTTGTTCACAGAGCTGGGTCTCCATCTTA  838

seq1  AACTTCTATCTCTGCAACATTGTCGCACAGTCCTGTCTACAACTTCTAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTATCTCTGCAACATTGTCGCACAGTCCTGTCTACAACTTCTAAT  888

seq1  GAAGTTGAAACAGAGTAGAATCTGGTATTGCTCCTGACTCATGGGAAAGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAACAGAGTAGAATCTGGTATTGCTCCTGACTCATGGGAAAGC  938

seq1  ATTTACTCTTTGGCCTTCATTTCTGGTGTTAAGTAGGCCTGAATTTTTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCTTTGGCCTTCATTTCTGGTGTTAAGTAGGCCTGAATTTTTGA  988

seq1  TTCTGTTAGGATGAAAAAATTATCTCTTACTCCAACTCTTCTGGGATTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAGGATGAAAAAATTATCTCTTACTCCAACTCTTCTGGGATTTC  1038

seq1  TGTTCCATAATCATGAAATGTGGGACTTGTTAATAATTTTCTGCACCACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATAATCATGAAATGTGGGACTTGTTAATAATTTTCTGCACCACT  1088

seq1  TGAAATAATTTCATTGCTTTTACTTTT  1119
      |||||||||||||||||||||||||||
seq2  TGAAATAATTTCATTGCTTTTACTTTT  1115