BAC Information

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BAC

Clone NameB6Ng01-005A21
Chromosome16 (Build37)
Map Location 31,210,895 - 31,345,294
singlet/doubletdoublet
Overlap genePpp1r2, Apod
Upstream geneLOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
Downstream gene1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A21.bB6Ng01-005A21.g
ACCDH842300DH842301
length1,197389
definitionDH842300|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A21, 5' end.DH842301|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,344,111 - 31,345,294)(31,210,895 - 31,211,289)
sequence
gaattcaatctccaaatagcagaagaaaagaactaactcctgaaagttgg
gcatcctctgacctctgcatacaattaaataaatataattaatttattat
tgaaaaaccctaaaatacaattttgctacctttggatttcaattagtgct
tacacaatttaaatttaatgcaactttcaatatgataagccaatacaatg
gaactttaaaaaatattttatctaaaggaagaccctaagatgccaggcat
tggggaaaaacatctataatcccagaactcagctgacagaggcaagggaa
tcatgagtttaaggccagcctgtgctacatcgtgagttccaggttagctt
gagctatccattcagattaaataagtatataaataatagaaacatttaaa
ggtgcaacacaacaaaaaacagaaagccaggaagagagaccagaatgaag
aatagataagaaacagttagaagatttaactgcagttaaacctagatgta
tattttaaagtatcagcgttgggtaaataatctcagttgacagacttttt
tttaattactaaaggctcaacttcctgtttctggtctgcaacatccatga
tgagaagcccatcgtcacctttaatcgtctgcatttgttatgtcctttct
cagattttcttcgtcttttgggcagttctgcaactctgtttgacattcag
caggttagttctcatccacattgactgtctgtaggtttttgaatgtggtc
ataagttaccagtgtgtaaagcttgtttggtgaatcctcatcctcactat
gttttccggacaaaggaactcagatgtgatctgaaacatttcatgttcct
ttggtccagaaggttttattggagcctggtaatcaacacacacatctggg
agtccccattttccttcatgggcaaattttcaggattgctttcaggtacc
caaagaggcaccactttctttgaaggcccaactccgtggatgtgcttgtg
aatgtaggatggtattaccttgttgatggtaaattggccccttcttcttg
cgctctttcttggtgggaaccaattctggctagaccaagttggaaggaac
agggagtggaggaatggccaaacatttctaatttggaataccttacaggt
atctcattgttaaaatctctaatgcttcatacaatcttagggttact
aaacctgcctgaactccataatgagactctgtttcaaaaaactgggggct
ggagatgcaccttaatggtagaggtcatacctggtgtcctggttggttgt
gttgttgctgttgttgtttgctttgtcaacttgacacaaactagagtcat
ctggaaaaaaaggaacctcaactaagaaaacaattccatccaagtgatgg
tgcgcaattttaatcccagcactcaggaagcagaggcaggaggatccgag
tttgaagccagcctggtctacagagtgagttctaggacagccagggccac
agagaaaccctgtttgaaaaaaaaaaaaagcaaaaggaaagaaagggaag
gaagaaaggaaataagaaagagggagggagggaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31344111_31345294
seq2: B6Ng01-005A21.b_43_1239 (reverse)

seq1  AGTAAACCTAAGAATGTAATGAAGCATGTAAGAAGAATTTTAACAATGAG  50
      ||||| ||||||| ||| |||||||||   ||    ||||||||||||||
seq2  AGTAACCCTAAGATTGT-ATGAAGCATTAGAG----ATTTTAACAATGAG  45

seq1  ATAAACTGTTAAAGTTATTC--AATTAGAAATGTTTTGGCAATCCTCCAC  98
      || | ||||  ||| |||||  |||||||||||||| | || ||||||||
seq2  AT-ACCTGT--AAGGTATTCCAAATTAGAAATGTTTGGCCATTCCTCCAC  92

seq1  T-CCTG-TCCTTCCAACTTGGGTCT-GGCAGAA-TGGTTCCCACAAAG-A  143
      | |||| |||||||||||| ||||| | ||||| |||||||||| ||| |
seq2  TCCCTGTTCCTTCCAACTT-GGTCTAGCCAGAATTGGTTCCCACCAAGAA  141

seq1  AGAGCGGCAAGAAGAAGGGGCCATTTTACCATCAACAAGGT-ATACCAT-  191
      ||||| ||||||||||||||||| ||||||||||||||||| ||||||| 
seq2  AGAGC-GCAAGAAGAAGGGGCCAATTTACCATCAACAAGGTAATACCATC  190

seq1  CTACATTCACAAGCACATCCACGGAGT--GGGCTTCAA--GAAGT-GTGC  236
      |||||||||||||||||||||||||||  || ||||||   |||| ||||
seq2  CTACATTCACAAGCACATCCACGGAGTTGGGCCTTCAAAGAAAGTGGTGC  240

seq1  CTC-TTGGGTA-CTGAAAGCAAT-CTGGAAATTTG-CCATGAA-GAAAAT  281
      ||| ||||||| ||||||||||| ||| ||||||| ||||||| ||||||
seq2  CTCTTTGGGTACCTGAAAGCAATCCTGAAAATTTGCCCATGAAGGAAAAT  290

seq1  GGGGACT-CCAGATGTGTGTGTTGA-TACCAGGCT-CAATAAAACCTTCT  328
      ||||||| ||||||||||||||||| ||||||||| ||||||||||||||
seq2  GGGGACTCCCAGATGTGTGTGTTGATTACCAGGCTCCAATAAAACCTTCT  340

seq1  GGACCAAAGGAACATGGAATGTTTCAGATCACATCTGAGTTCCTTTGTCC  378
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGACCAAAGGAACATGAAATGTTTCAGATCACATCTGAGTTCCTTTGTCC  390

seq1  GGAAAACATAGTGAGGATGAGGATTCACCAAACAAGCTTTACACACTGGT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATAGTGAGGATGAGGATTCACCAAACAAGCTTTACACACTGGT  440

seq1  AACTTATGACCACATTCAAAAACCTACAGACAGTCAATGTGGATGAGAAC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGACCACATTCAAAAACCTACAGACAGTCAATGTGGATGAGAAC  490

seq1  TAACCTGCTGAATGTCAAACAGAGTTGCAGAACTG-CCAAAAGACGAAGA  527
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAACCTGCTGAATGTCAAACAGAGTTGCAGAACTGCCCAAAAGACGAAGA  540

seq1  AAATCTGAGAAAGGACATAACAAATGCAGACGATTAAAGGTGACGATGGG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAGAAAGGACATAACAAATGCAGACGATTAAAGGTGACGATGGG  590

seq1  CTTCTCATCATGGATGTTGCAGACCAGAAACAGGAAGTTGAGCCTTTAGT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATCATGGATGTTGCAGACCAGAAACAGGAAGTTGAGCCTTTAGT  640

seq1  AATTAAAAAAAAGTCTGTCAACTGAGATTATTTACCCAACGCTGATACTT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAAAGTCTGTCAACTGAGATTATTTACCCAACGCTGATACTT  690

seq1  TAAAATATACATCTAGGTTTAACTGCAGTTAAATCTTCTAACTGTTTCTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATACATCTAGGTTTAACTGCAGTTAAATCTTCTAACTGTTTCTT  740

seq1  ATCTATTCTTCATTCTGGTCTCTCTTCCTGGCTTTCTGTTTTTTGTTGTG  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCTTCATTCTGGTCTCTCTTCCTGGCTTTCTGTTTTTTGTTGTG  790

seq1  TTGCACCTTTAAATGTTTCTATTATTTATATACTTATTTAATCTGAATGG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTTTAAATGTTTCTATTATTTATATACTTATTTAATCTGAATGG  840

seq1  ATAGCTCAAGCTAACCTGGAACTCACGATGTAGCACAGGCTGGCCTTAAA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAAGCTAACCTGGAACTCACGATGTAGCACAGGCTGGCCTTAAA  890

seq1  CTCATGATTCCCTTGCCTCTGTCAGCTGAGTTCTGGGATTATAGATGTTT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATTCCCTTGCCTCTGTCAGCTGAGTTCTGGGATTATAGATGTTT  940

seq1  TTCCCCAATGCCTGGCATCTTAGGGTCTTCCTTTAGATAAAATATTTTTT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAATGCCTGGCATCTTAGGGTCTTCCTTTAGATAAAATATTTTTT  990

seq1  AAAGTTCCATTGTATTGGCTTATCATATTGAAAGTTGCATTAAATTTAAA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCATTGTATTGGCTTATCATATTGAAAGTTGCATTAAATTTAAA  1040

seq1  TTGTGTAAGCACTAATTGAAATCCAAAGGTAGCAAAATTGTATTTTAGGG  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAGCACTAATTGAAATCCAAAGGTAGCAAAATTGTATTTTAGGG  1090

seq1  TTTTTCAATAATAAATTAATTATATTTATTTAATTGTATGCAGAGGTCAG  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAATAATAAATTAATTATATTTATTTAATTGTATGCAGAGGTCAG  1140

seq1  AGGATGCCCAACTTTCAGGAGTTAGTTCTTTTCTTCTGCTATTTGGAGAT  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCCCAACTTTCAGGAGTTAGTTCTTTTCTTCTGCTATTTGGAGAT  1190

seq1  TGAATTC  1184
      |||||||
seq2  TGAATTC  1197

seq1: chr16_31210895_31211289
seq2: B6Ng01-005A21.g_67_461

seq1  GAATTCAAACCTGCCTGAACTCCATAATGAGACTCTGTTTCAAAAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTGCCTGAACTCCATAATGAGACTCTGTTTCAAAAAACTG  50

seq1  GGGGCTGGAGATGCACCTTAATGGTAGAGGTCATACCTGGTGTCCTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAGATGCACCTTAATGGTAGAGGTCATACCTGGTGTCCTGGTT  100

seq1  GGTTGTGTTGTTGCTGTTGTTGTTTGCTTTGTCAACTTGACACAAACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTTGTTGCTGTTGTTGTTTGCTTTGTCAACTTGACACAAACTAG  150

seq1  AGTCATCTGGAAAAAAAGGAACCTCAACTAAGAAAACAATTCCATCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGGAAAAAAAGGAACCTCAACTAAGAAAACAATTCCATCCAAG  200

seq1  TGATGGTGCGCAATTTTAATCCCAGCACTCAGGAAGCAGAGGCAGGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGCGCAATTTTAATCCCAGCACTCAGGAAGCAGAGGCAGGAGGA  250

seq1  TCCGAGTTTGAAGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTTTGAAGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAG  300

seq1  GGCCACAGAGAAACCCTGTTTGAAAAAAAAAAAAAGCAAAAGGAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAGAAACCCTGTTTGAAAAAAAAAAAAAGCAAAAGGAAAGAAA  350

seq1  GGGAAGGAAGAAAGGAAATAAGAAAGAGGGAGGGAGGGAGGAAGG  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAGAAAGGAAATAAGAAAGAGGGAGGGAGGGAGGAAGG  395