BAC Information

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BAC

Clone NameB6Ng01-006C20
Chromosome16 (Build37)
Map Location 31,139,156 - 31,288,430
singlet/doubletdoublet
Overlap geneCentb2, Ppp1r2
Upstream geneEG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
Downstream geneApod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C20.bB6Ng01-006C20.g
ACCDH843110DH843111
length644858
definitionDH843110|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C20, 5' end.DH843111|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,139,156 - 31,139,798)(31,287,575 - 31,288,430)
sequence
gaattcatcttcaagagaggcagattccctaagaacaatccatacccgcc
cgtgtgctgtctcgctgtggactccctgagaggctctgcggctcacgttt
agaagcactaagaaaagtctttagaaaactgacaaaaggatacatatgct
cactgctgccaggaaaaactaacaccatctaaatccagggctcgtacatc
aactaaactgaaacaggaaagctacagaatatgggtaagatattataacc
caatagaaagaagaaatcagaaccaaagatatctatagctatagtgtgtg
tgggtgtgtatgcgtgcacacgtgcacgtgtgcacgggcacaaaaaaaag
tgtactagaaaactactactattagttgcaagacaagaggagtcgcggta
cctgcaggacgtagtcaagcgctatgtgccggaagcatttccgcgtggcc
gtgagaatgtttgcagcctcttcaacctcgtgttgtttgtttctttgaac
ttgggcattttatactagtgcgttttccttttcttcactgactttttgaa
attgtttcttggcatctttgaaattttctaagatctctataatataaaaa
tttagtgaaactttcttcaaaatagccttaaggcttactgtcac
gaattctgggctgttcaggaaaaccctatttcagaaaaaaataaaacaaa
gcaaacaccatcaacaaaaaacttagactcaactaataggcaccctaaga
ggtgtgtctcaacatagaaggatggtatttcccaaatgttaaatagaaga
aatcacagagaaaggaaagcaattaaattgaagaataacaatcaccttca
aataattatttaaaaaatgcaaaggaaacaagcacaacactaaaaatgga
atctatagaacattccagaaaagactacattaacttacccagttcaatac
aaccaagtgtggggggttttctgcctaagggacaatggcttcagctctct
gctgtgagagttgttttgactcattctctgaattatgcctacaaacgcta
acacccatgttaggttggcaggaaggcagctggctcttgttttcagaatt
accacctcccaaaataaacccatgtatgtatgtcagctccaagttattta
cctaaattagctagggatggagcccagtggtagagtgtttatgtagcaca
cggaaggccccaggttggattgccggcactgggttgggagatgggataga
tcactttgggctggggatataaattaatggtggaggacttgcttgttcat
gtgtaagacctgggtccttttgcctcagatggtttatctctttgattatt
ttttgtataataggagatgctttggtgcaaattttacttatatgtttttt
tttttcctctaggaaggacagagttttatgagtgtcttggattttggaga
tgtattcagatatcatgctaatttattttatttttggggactggggagga
ggaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31139156_31139798
seq2: B6Ng01-006C20.b_30_673

seq1  GAATTCATCTTCAAGAGAGGCAGATTCCCTAAGAACAATCCATACCCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCAAGAGAGGCAGATTCCCTAAGAACAATCCATACCCGCC  50

seq1  CGTGTGCTGTCTCGCTGTGGACTCCCTGAGAGGCTCTGCGGCTCACGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCTGTCTCGCTGTGGACTCCCTGAGAGGCTCTGCGGCTCACGTTT  100

seq1  AGAAGCACTAAGAAAAGTCTTTAGAAAACTGACAAAAGGATACATATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACTAAGAAAAGTCTTTAGAAAACTGACAAAAGGATACATATGCT  150

seq1  CACTGCTGCCAGGAAAAACTAACACCATCTAAATCCAGGGCTCGTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGCCAGGAAAAACTAACACCATCTAAATCCAGGGCTCGTACATC  200

seq1  AACTAAACTGAAACAGGAAAGCTACAGAATATGGGTAAGATATTATAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACTGAAACAGGAAAGCTACAGAATATGGGTAAGATATTATAACC  250

seq1  CAATAGAAAGAAGAAATCAGAACCAAAGATATCTATAGCTATAGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAAGAAGAAATCAGAACCAAAGATATCTATAGCTATAGTGTGTG  300

seq1  TGGGTGTGTATGCGTGCACACGTGCACGTGTGCACGGGCACAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGTATGCGTGCACACGTGCACGTGTGCACGGGCACAAAAAAAAG  350

seq1  TGTACTAGAAAACTACTACTATTAGTTGCAAGACAAGAGGAGTCGCGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAGAAAACTACTACTATTAGTTGCAAGACAAGAGGAGTCGCGGTA  400

seq1  CCTGCAGGACGTAGTCAAGCGCTATGTGCCGGAAGCATTTCCGCGTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGACGTAGTCAAGCGCTATGTGCCGGAAGCATTTCCGCGTGGCC  450

seq1  GTGAGAATGTTTGCAGCCTCTTCAACCTCGTGCTGTTTGTTTCTTTGAAC  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGAGAATGTTTGCAGCCTCTTCAACCTCGTGTTGTTTGTTTCTTTGAAC  500

seq1  TTGGGCATTTTTTACTAGTGCGTTTTCCTTTTCTTCACTGACTTTTTCAA  550
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  TTGGGCATTTTATACTAGTGCGTTTTCCTTTTCTTCACTGACTTTTTGAA  550

seq1  ATTGTTTCTTGGCATCTTTG-AATTTTCTAAGATCTCTAAAAGATAAAAA  599
      |||||||||||||||||||| |||||||||||||||||| || |||||||
seq2  ATTGTTTCTTGGCATCTTTGAAATTTTCTAAGATCTCTATAATATAAAAA  600

seq1  TTTAGTGAAACTTTCTTCAAAATAGCCTTAGAGTTTACTGTCAC  643
      ||||||||||||||||||||||||||||||  | ||||||||||
seq2  TTTAGTGAAACTTTCTTCAAAATAGCCTTAAGGCTTACTGTCAC  644

seq1: chr16_31287575_31288430
seq2: B6Ng01-006C20.g_66_923 (reverse)

seq1  GTTATTCCTCCTCCCCAGTCCCC-AAAATAAAATAAATTAGCATGATATC  49
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTATTCCTCCTCCCCAGTCCCCAAAAATAAAATAAATTAGCATGATATC  50

seq1  TGAATACATCTCCAAAATCCAAGACACTCATAAAACTCTGTCCTTCCTAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACATCTCCAAAATCCAAGACACTCATAAAACTCTGTCCTTCCTAG  100

seq1  AGG-AAAAAAAAAACATATAAGTTAAATTTGCACCAAAGCATCTCCTATT  148
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAAACATATAAGTAAAATTTGCACCAAAGCATCTCCTATT  150

seq1  ATACAAAAAATAATCAAAGAGATAAACCATCTGAGGCAAAAGGACCCAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAAATAATCAAAGAGATAAACCATCTGAGGCAAAAGGACCCAGG  200

seq1  TCTTACACATGAACAAGCAAGTCCTCCACCATTAATTTATATCCCCAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACATGAACAAGCAAGTCCTCCACCATTAATTTATATCCCCAGCC  250

seq1  CAAAGTGATCTATCCCATCTCCCAACCCAGTGCCGGCAATCCAACCTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGATCTATCCCATCTCCCAACCCAGTGCCGGCAATCCAACCTGGG  300

seq1  GCCTTCCGTGTGCTACATAAACACTCTACCACTGGGCTCCATCCCTAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCGTGTGCTACATAAACACTCTACCACTGGGCTCCATCCCTAGCT  350

seq1  AATTTAGGTAAATAACTTGGAGCTGACATACATACATGGGTTTATTTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGTAAATAACTTGGAGCTGACATACATACATGGGTTTATTTTGG  400

seq1  GAGGTGGTAATTCTGAAAACAAGAGCCAGCTGCCTTCCTGCCAACCTAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTAATTCTGAAAACAAGAGCCAGCTGCCTTCCTGCCAACCTAAC  450

seq1  ATGGGTGTTAGCGTTTGTAGGCATAATTCAGAGAATGAGTCAAAACAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTTAGCGTTTGTAGGCATAATTCAGAGAATGAGTCAAAACAACT  500

seq1  CTCACAGCAGAGAGCTGAAGCCATTGTCCCTTAGGCAGAAAACCCCCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCAGAGAGCTGAAGCCATTGTCCCTTAGGCAGAAAACCCCCCAC  550

seq1  ACTTGGTTGTATTGAACTGGGTAAGTTAATGTAGTCTTTTCTGGAATGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTGTATTGAACTGGGTAAGTTAATGTAGTCTTTTCTGGAATGTT  600

seq1  CTATAGATTCCATTTTTAGTGTTGTGCTTGTTTCCTTTGCATTTTTTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATTCCATTTTTAGTGTTGTGCTTGTTTCCTTTGCATTTTTTAAA  650

seq1  TAATTATTTGAAGGTGATTGTTATTCTTCAATTTAATTGCTTTCCTTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTGAAGGTGATTGTTATTCTTCAATTTAATTGCTTTCCTTTCT  700

seq1  CTGTGATTTCTTCTATTTAACATTTGGGAAATACCATCCTTCTATGTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTCTTCTATTTAACATTTGGGAAATACCATCCTTCTATGTTGA  750

seq1  GACACACCTCTTAGGGTGCCTATTAGTTGAGTCTAAGTTTTTTGTTGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCTCTTAGGGTGCCTATTAGTTGAGTCTAAGTTTTTTGTTGATG  800

seq1  GTGTTTGCTTTGTTTTATTTTTTTCTGAAATAGGGTTTTCCTGAACAGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTTTGTTTTATTTTTTTCTGAAATAGGGTTTTCCTGAACAGCC  850

seq1  CAGAATTC  856
      ||||||||
seq2  CAGAATTC  858