BAC Information

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BAC

Clone NameB6Ng01-006H22
Chromosome16 (Build37)
Map Location 67,233,524 - 67,364,881
singlet/doubletdoublet
Overlap geneCadm2
Upstream genenone
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H22.bB6Ng01-006H22.g
ACCDH843339DH843340
length1,122936
definitionDH843339|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H22, 5' end.DH843340|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,233,524 - 67,234,647)(67,363,945 - 67,364,881)
sequence
gaattccctgcctattctacccctcttcaatagcctagcaacatggcaca
tcattgttagccctcaaaatgtgacacatttccgctatttcaggagtcac
atattctcccagtgtgtatgtgatataccaccttaatgtgatataccacc
atataaaatgaaagtgcctcctcttcttggggtattttcctttccaccca
cactcagagccagcctctcaatacttcaccccccaacccaaagagcctct
cacaagagatatgttgtatggtatggttggtttgcagcacaccttggtgg
cccataagatatttctgttcctgtacactaatattggaggatataaaaag
tttgttgaatctcttgtagctggagttacaaataattgtgagacttcatt
tgagtgctggaggtcctgcacaggataaacatcaattgctctgaactgta
aaaggcatggctctagtccttctgggctcttttgaaacccaacaaaaatg
tacagtgtgtattttattttttaggttcttcaaataagaagatggcaaca
actgtcggacagaggtttttttctcaaggagttttcaatttttctcccac
ttcctgtgtgagtgaagagtgaaaagcaatacagttcaatgaaatacaga
acaaaagtgacaagaaaagaagaacttataaggcaaataaagatatagac
atgtccaacgttctgcttacagaagatgtcctagtcttccagtacactgc
ttggtcaagaaagatgacagctctattaactaaataagtattggctgtgt
atatatcaggtactgagaattgtgtgtggtctatttccaacttggttgaa
gaatgtaaagattgtgtggtaggaaatactttttcaaggtgtctactatt
catgtaaattccatatgaggacacataaagtatgaagcaatcaatttcac
tggtctttttgaagaggtctgcaatttaataatgacattttaatttctat
tcatagttatctcctgtttcatttagccctcttagttggctagactgcac
gtaactactattagagtattcacttcagtaaaattattaaaactatgttg
gttactgcctcctccagaaaaa
gaattctttgaatgtagtaaagagcccaaagggaaaactcaactagacca
atcaccaactcagatgacagggaacaaatgcctaactgtgacattacttt
taatgaagttatttaaaaacatgctaaaatgcaatgtacggacagtatta
aaatatttttctcaggtagtaaggggaatttttattattgatatttttct
agtaagtttgcagagaaatttttctctaaaatcttaaaacaataaaacac
tgatatactttgttatataaaatatcaaactatagataatagggaataat
agggtatatcatgatgctctcatattaaaattagcatatgttaatattaa
caatgtactcttttttctcccccttcttgtttttataggtgagtaactga
aggtaacaaagcagaaatcatggatataagtattatatgctcctttatta
atgtcctgtgggtaagtaaaggaaaaaactctttaacgttgcaggatgga
tgctgtacttgaaaaaaaatgcagattaacaatctggagggttctatcat
gaaatctctctgacgtaatttaagtgatttgttcttagacacacaagcat
tgaggatttttttccatttgttaatgtttgtaattgtctctttcagattt
gtaagtaagcaaatatagcttcttcaattctcttaaatatttatttattt
attttctatgtatattaatacactgtagctgccttcagaaaaccagaaga
gggcatcagaccacattacagatggttataagctactatgtagttgctgg
gaattgaattcaggccgtctgaaaaaacagtcagtgctctaaagtgcggg
gtcatctaacaagcccacctgctaaagatatataaagatttaactttaaa
gagctaatatcaatgaatatgttgtggggaatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67233524_67234647
seq2: B6Ng01-006H22.b_46_1167

seq1  GAATTCCCTGCCTATTCTACCCCTCTTCAATAGCCTAGCAACATGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCCTATTCTACCCCTCTTCAATAGCCTAGCAACATGGCACA  50

seq1  TCATTGTTAGCCCTCAAAATGTGACACATTTCCGCTATTTCAGGAGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTAGCCCTCAAAATGTGACACATTTCCGCTATTTCAGGAGTCAC  100

seq1  ATATTCTCCCAGTGTGTATGTGATATACCACCTTAATGTGATATACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCCCAGTGTGTATGTGATATACCACCTTAATGTGATATACCACC  150

seq1  ATATAAAATGAAAGTGCCTCCTCTTCTTGGGGTATTTTCCTTTCCACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATGAAAGTGCCTCCTCTTCTTGGGGTATTTTCCTTTCCACCCA  200

seq1  CACTCAGAGCCAGCCTCTCAATACTTCACCCCCCAACCCAAAGAGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGCCAGCCTCTCAATACTTCACCCCCCAACCCAAAGAGCCTCT  250

seq1  CACAAGAGATATGTTGTATGGTATGGTTGGTTTGCAGCACACCTTGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGATATGTTGTATGGTATGGTTGGTTTGCAGCACACCTTGGTGG  300

seq1  CCCATAAGATATTTCTGTTCCTGTACACTAATATTGGAGGATATAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGATATTTCTGTTCCTGTACACTAATATTGGAGGATATAAAAAG  350

seq1  TTTGTTGAATCTCTTGTAGCTGGAGTTACAAATAATTGTGAGACTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAATCTCTTGTAGCTGGAGTTACAAATAATTGTGAGACTTCATT  400

seq1  TGAGTGCTGGAGGTCCTGCACAGGATAAACATCAATTGCTCTGAACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGAGGTCCTGCACAGGATAAACATCAATTGCTCTGAACTGTA  450

seq1  AAAGGCATGGCTCTAGTCCTTCTGGGCTCTTTTGAAACCCAACAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGGCTCTAGTCCTTCTGGGCTCTTTTGAAACCCAACAAAAATG  500

seq1  TACAGTGTGTATTTTATTTTTTAGGTTCTTCAAATAAGAAGATGGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTGTATTTTATTTTTTAGGTTCTTCAAATAAGAAGATGGCAACA  550

seq1  ACTGTCGGACAGAGGTTTTTTTCTCAAGGAGTTTTCAATTTTTCTCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCGGACAGAGGTTTTTTTCTCAAGGAGTTTTCAATTTTTCTCCCAC  600

seq1  TTCCTGTGTGAGTGAAGAGTGAAAAGCAATACAGTTCAATGAAATACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTGAGTGAAGAGTGAAAAGCAATACAGTTCAATGAAATACAGA  650

seq1  ACAAAAGTGACAAGAAAAGAAGAACTTATAAGGCAAATAAAGATATAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGACAAGAAAAGAAGAACTTATAAGGCAAATAAAGATATAGAC  700

seq1  ATGTCCAACGTTCTGCTTACAGAAGATGTCCTAGTCTTCCAGTACACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAACGTTCTGCTTACAGAAGATGTCCTAGTCTTCCAGTACACTGC  750

seq1  TTGGTCAAGAAAGATGACAGCTCTATTAACTAAATAAGTATTGGCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAAGAAAGATGACAGCTCTATTAACTAAATAAGTATTGGCTGTGT  800

seq1  ATATATCAGGTACTGAGAATTGTGTGTGGTCTATTTCCAACTTGGTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAGGTACTGAGAATTGTGTGTGGTCTATTTCCAACTTGGTTGAA  850

seq1  GAATGTAAAGATTGTGTGGTAGGAAATACTTTTTCAAGGTGTCTACTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAAGATTGTGTGGTAGGAAATACTTTTTCAAGGTGTCTACTATT  900

seq1  CATGTAAATTCCATATGAAGACACATAAAGTATGAAGCAATCAA-TCCAC  949
      |||||||||||||||||| ||||||||||||||||||||||||| | |||
seq2  CATGTAAATTCCATATGAGGACACATAAAGTATGAAGCAATCAATTTCAC  950

seq1  TGGTCTCTTTGAAAGAGGTCTGC-ATTTTATAATGACAATTTTAATTTCT  998
      |||||| |||| ||||||||||| |||| |||||||| ||||||||||||
seq2  TGGTCTTTTTG-AAGAGGTCTGCAATTTAATAATGAC-ATTTTAATTTCT  998

seq1  ATTCTATAATTATCTCCTGTTTCATTTTAGCACTCTTAGTTTGCTAGACT  1048
      |||| ||| ||||||||||||||| |||||| ||||||||| ||||||||
seq2  ATTC-ATAGTTATCTCCTGTTTCA-TTTAGCCCTCTTAGTTGGCTAGACT  1046

seq1  GCACGTAACTACATTTATAGTTATTCAACTACAAGTATAAATTATT-AAA  1097
      ||||||||||||  ||| || ||||| ||| | |||| |||||||| |||
seq2  GCACGTAACTACTATTAGAG-TATTC-ACTTC-AGTA-AAATTATTAAAA  1092

seq1  CTATGTT-GTTACTGCCTC--CCAGAAAAA  1124
      ||||||| |||||||||||  |||||||||
seq2  CTATGTTGGTTACTGCCTCCTCCAGAAAAA  1122

seq1: chr16_67363945_67364881
seq2: B6Ng01-006H22.g_69_1004 (reverse)

seq1  ATATATTCCACACAACATATTCATTGATATTAGCTCTTTAAAGTTAAATC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCCCCACAACATATTCATTGATATTAGCTCTTTAAAGTTAAATC  50

seq1  TTTAATATATCTTTAGCAGGTGGGCTTGTTAGATGACCCCGCACTTTAGA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-ATATATCTTTAGCAGGTGGGCTTGTTAGATGACCCCGCACTTTAGA  99

seq1  GCACTGACTGTTTTTTCAGACGGCCTGAATTCAATTCCCAGCAACTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGTTTTTTCAGACGGCCTGAATTCAATTCCCAGCAACTACAT  149

seq1  AGTAGCTTATAACCATCTGTAATGTGGTCTGATGCCCTCTTCTGGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTATAACCATCTGTAATGTGGTCTGATGCCCTCTTCTGGTTTTC  199

seq1  TGAAGGCAGCTACAGTGTATTAATATACATAGAAAATAAATAAATAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGCTACAGTGTATTAATATACATAGAAAATAAATAAATAAATA  249

seq1  TTTAAGAGAATTGAAGAAGCTATATTTGCTTACTTACAAATCTGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAATTGAAGAAGCTATATTTGCTTACTTACAAATCTGAAAGAG  299

seq1  ACAATTACAAACATTAACAAATGGAAAAAAATCCTCAATGCTTGTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACAAACATTAACAAATGGAAAAAAATCCTCAATGCTTGTGTGTC  349

seq1  TAAGAACAAATCACTTAAATTACGTCAGAGAGATTTCATGATAGAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAAATCACTTAAATTACGTCAGAGAGATTTCATGATAGAACCCT  399

seq1  CCAGATTGTTAATCTGCATTTTTTTTCAAGTACAGCATCCATCCTGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGTTAATCTGCATTTTTTTTCAAGTACAGCATCCATCCTGCAAC  449

seq1  GTTAAAGAGTTTTTTCCTTTACTTACCCACAGGACATTAATAAAGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAGTTTTTTCCTTTACTTACCCACAGGACATTAATAAAGGAGCA  499

seq1  TATAATACTTATATCCATGATTTCTGCTTTGTTACCTTCAGTTACTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTTATATCCATGATTTCTGCTTTGTTACCTTCAGTTACTCACC  549

seq1  TATAAAAACAAGAAGGGGGAGAAAAAAGAGTACATTGTTAATATTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACAAGAAGGGGGAGAAAAAAGAGTACATTGTTAATATTAACAT  599

seq1  ATGCTAATTTTAATATGAGAGCATCATGATATACCCTATTATTCCCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTTTAATATGAGAGCATCATGATATACCCTATTATTCCCTATT  649

seq1  ATCTATAGTTTGATATTTTATATAACAAAGTATATCAGTGTTTTATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGTTTGATATTTTATATAACAAAGTATATCAGTGTTTTATTGTT  699

seq1  TTAAGATTTTAGAGAAAAATTTCTCTGCAAACTTACTAGAAAAATATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTTAGAGAAAAATTTCTCTGCAAACTTACTAGAAAAATATCAA  749

seq1  TAATAAAAATTCCCCTTACTACCTGAGAAAAATATTTTAATACTGTCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATTCCCCTTACTACCTGAGAAAAATATTTTAATACTGTCCGT  799

seq1  ACATTGCATTTTAGCATGTTTTTAAATAACTTCATTAAAAGTAATGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCATTTTAGCATGTTTTTAAATAACTTCATTAAAAGTAATGTCAC  849

seq1  AGTTAGGCATTTGTTCCCTGTCATCTGAGTTGGTGATTGGTCTAGTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGCATTTGTTCCCTGTCATCTGAGTTGGTGATTGGTCTAGTTGAG  899

seq1  TTTTCCCTTTGGGCTCTTTACTACATTCAAAGAATTC  937
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTGGGCTCTTTACTACATTCAAAGAATTC  936