BAC Information

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BAC

Clone NameB6Ng01-006J04
Chromosome2 (Build37)16 (Build37)
Map Location 124,251,341 - 124,252,45215,492,547 - 15,492,997
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J04.bB6Ng01-006J04.g
ACCDH843392DH843393
length1,100939
definitionDH843392|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J04, 5' end.DH843393|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,251,341 - 124,252,452)(15,492,547 - 15,492,997)
sequence
gaattcaccttcttccttggccaaagcaagttcagcctcagcttgtcaga
ttataaattgacttccagacttaaaccaaatggcttttattaccaatagg
tggaatgcctaggtaggctgctgtttccacatggaacgtgtatctcattg
ttggttctaaggggtcttttttatgatgagtgttgattattaatatgaaa
acaaataaacccactaagacctaaccagtcagcacatatataagtcaatt
aacagtaagttcaagatttccaatgctgatgttggtctaagaaagagaaa
tcactgagaaacctggcaagacatagaaaaaaaaaaaaacttcctagtac
agacaagccatcataaggttcttagagaatgagtaacttcttttgtttgt
ttgttttttacatagactacaccaagttacttgcttccgtgagatttcat
gacacatttagatatcaatgcacagcagtatttaattaaggaactatctg
tagatttcatctatgcataggccagtcaggtccaggaaggtacagagttc
caagaagggcagaatgagtggctctcaaaggttcaggtggaagcaggagc
tggggctgccacactgtcttgggggccatgcataatttagaaaaccacaa
tgaaatgcttttatagtcagaaagagagaagagaattactgttatcatat
aaataatatgaaataagcttgacaaatgtatccattatctgaaagaggcc
tcaataaagggttgactctgtgacagagaagacactgagtctgtgcatgg
ttttgaccaatacataaatagtgaatggacattttaaaaacagtttgaag
cacttgaagaattatacatcagacttaaagcattgtctggccctcactcc
ctttctcagagactcatgtcgcatatacagccactgacgctgagagagct
tcacataacttgcagatatttgagttaaagctcaatgcaagccaatagaa
aatttggagaataccacttcagagaagaaagctacagcttagcaaatgtt
gcctcacattctgccaaagactgaactgcaagaccggcaatagaatgagg

gaattccattccatgaagatctggttaattttaagtttcagtgatgcatt
aaaaaatttagcaaatttcccatctagtgactgccatatgcagggatcca
tcccataatcagcttccaaatgctgacaccattacataaactagcaagat
ttcgctgaaaggacccagttatagctctctcttgtgagactatgccgggg
cctagcaaacacagaagtggatgatcacagtcagctattggatgggtcac
acggcccctaatggaggagctagagaaattacccaaggagctatagggaa
ctgcaaccctataggtggaacaacaatatgaactaaccagtacccgggag
ctctttagctgcatatgtatcaaaagatggcctagtcggccatcactgga
aagagaggcccattggacttgcaaactttatatgccccagtacaggggaa
tgccagggccaaaaagggggagtgggtgggtaggggattgtcctctatac
tgctatcataattttccataaatctttatctattttaaaattaaaacatt
aaaattttaatttttaatgaggtgtggttatcagtagaatggataaaaca
aaggaaagaatatagaaaaatgaaaaatatccaggctaaacagaggcaaa
tacaaattgaacattcaaaaatgggtttaaaacatatgtgggatcccagg
agagaaggaagtggatcagactgccctcagaaatataacagttggagaac
aaagcattcggtacatatgtgaatctattttgtgagactaagtaaaggat
taagagttgaggccttgctatcgtgctggacacctttaattccacacatt
ttggaggcagaggcaggtgataattgagttagaagggctgcctagtctat
agatcagtttcagaatagccagagctacacagattaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_124251341_124252452
seq2: B6Ng01-006J04.b_45_1144

seq1  GAATTCACCTTCTTCCTTGGCCAAAGCAAGTTCAGCCTCAGCTTGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCTTCCTTGGCCAAAGCAAGTTCAGCCTCAGCTTGTCAGA  50

seq1  TTATAAATTGACTTCCAGACTTAAACCAAATGGCTTTTATTACCAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTGACTTCCAGACTTAAACCAAATGGCTTTTATTACCAATAGG  100

seq1  TGGAATGCCTAGGTAGGCTGCTGTTTCCACATGGAACGTGTATCTCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCCTAGGTAGGCTGCTGTTTCCACATGGAACGTGTATCTCATTG  150

seq1  TTGGTTCTAAGGGGTCTTTTTTATGATGAGTGTTGATTATTAATATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTAAGGGGTCTTTTTTATGATGAGTGTTGATTATTAATATGAAA  200

seq1  ACAAATAAACCCACTAAGACCTAACCAGTCAGCACATATATAAGTCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAACCCACTAAGACCTAACCAGTCAGCACATATATAAGTCAATT  250

seq1  AACAGTAAGTTCAAGATTTCCAATGCTGATGTTGGTCTAAGAAAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAGTTCAAGATTTCCAATGCTGATGTTGGTCTAAGAAAGAGAAA  300

seq1  TCACTGAGAAACCTGGCAAGACATAGAAAAAAAAAAAAACTTCCTAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGAAACCTGGCAAGACATAGAAAAAAAAAAAAACTTCCTAGTAC  350

seq1  AGACAAGCCATCATAAGGTTCTTAGAGAATGAGTAACTTCTTTTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCCATCATAAGGTTCTTAGAGAATGAGTAACTTCTTTTGTTTGT  400

seq1  TTGTTTTTTACATAGACTACACCAAGTTACTTGCTTCCGTGAGATTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTACATAGACTACACCAAGTTACTTGCTTCCGTGAGATTTCAT  450

seq1  GACACATTTAGATATCAATGCACAGCAGTATTTAATTAAGGAACTATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTTAGATATCAATGCACAGCAGTATTTAATTAAGGAACTATCTG  500

seq1  TAGATTTCATCTATGCATAGGCCAGTCAGGTCCAGGAAGGTACAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCATCTATGCATAGGCCAGTCAGGTCCAGGAAGGTACAGAGTTC  550

seq1  CAAGAAGGGCAGAATGAGTGGCTCTCAAAGGTTCAGGTGGAAGCAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGGCAGAATGAGTGGCTCTCAAAGGTTCAGGTGGAAGCAGGAGC  600

seq1  TGGGGCTGCCACACTGTCTTGGGGGCCATGCATAATTTAGAAAACCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCCACACTGTCTTGGGGGCCATGCATAATTTAGAAAACCACAA  650

seq1  TGAAATGCTTTTATATTCAGAAAGAGAGAAAAGAATTACTTTTATCATAT  700
      ||||||||||||||| |||||||||||||| ||||||||| |||||||||
seq2  TGAAATGCTTTTATAGTCAGAAAGAGAGAAGAGAATTACTGTTATCATAT  700

seq1  AAATAATATGAAATAAGCTTGACAAATGTATCCATTATCTGAAAGAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATGAAATAAGCTTGACAAATGTATCCATTATCTGAAAGAGGCC  750

seq1  TCAATAAAGGGTTGACTCTGTGACAGAGAAGACACTGAGTCTGTGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGGGTTGACTCTGTGACAGAGAAGACACTGAGTCTGTGCATGG  800

seq1  TTTTGACCAATACATAAATAAGTGAATGGACATTTTAAAAAACAGTTTGA  850
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TTTTGACCAATACATAAAT-AGTGAATGGACATTTT-AAAAACAGTTTGA  848

seq1  AGCACTTGAAGAATTATACATCAGACTTAAAAGCATTGTCTGGCCCTCAC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCACTTGAAGAATTATACATCAGACTT-AAAGCATTGTCTGGCCCTCAC  897

seq1  TCCCTTTCTCAGAGACTCATGTCGCATATACAGCCAACTGAGGCTTAGGA  950
      ||||||||||||||||||||||||||||||||||| ||||| ||| | ||
seq2  TCCCTTTCTCAGAGACTCATGTCGCATATACAGCC-ACTGACGCTGA-GA  945

seq1  GAGCTCCACATAACTTGCAGATATTTGGGTTAAAGTTCAAATCAAGCCCA  1000
      ||||| ||||||||||||||||||||| ||||||| ||||  |||| |||
seq2  GAGCTTCACATAACTTGCAGATATTTGAGTTAAAGCTCAATGCAAG-CCA  994

seq1  ATAGAAAATTTGGAGAAAACCAACTTCAGAGAAGAAAGCCAACAGCTTAG  1050
      ||||||||||||||||| ||| |||||||||||||||| | |||||||||
seq2  ATAGAAAATTTGGAGAATACC-ACTTCAGAGAAGAAAG-CTACAGCTTAG  1042

seq1  CAAAAATGTTTCTCCACTTTCTGCCAAAGACTAAACTCCAAAGAACGGCA  1100
      |  ||||||| |  ||| |||||||||||||| |||| | |||| |||||
seq2  C--AAATGTTGCCTCACATTCTGCCAAAGACTGAACTGC-AAGACCGGCA  1089

seq1  ATAGGAATGAGG  1112
      ||| ||||||||
seq2  ATA-GAATGAGG  1100

seq1: chr16_15492547_15492997
seq2: B6Ng01-006J04.g_555_1003

seq1  GTCCTCTATACTGCTATCATAATTTTCCATAAATCTTTATCTATTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTATACTGCTATCATAATTTTCCATAAATCTTTATCTATTTTAAA  50

seq1  ATTAAAACATTAAAA-TTTAATTTTTAATGAGGTGTGGTTATCAGTAGAA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTAAAACATTAAAATTTTAATTTTTAATGAGGTGTGGTTATCAGTAGAA  100

seq1  TGGATAAAACAAAGGAAAGAATATAGAAAAATGAAAAATATCCAGGCTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAACAAAGGAAAGAATATAGAAAAATGAAAAATATCCAGGCTAA  150

seq1  ACAGAGGCAAATACAAATTGAACATTCAAAAATGGGTTTAAAACATATGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAAATACAAATTGAACATTCAAAAATGGGTTTAAAACATATGT  200

seq1  GGGATCCCAGGAGAGAAGGAAGTGGATCAGACTGCCCTCAGAAATATAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCAGGAGAGAAGGAAGTGGATCAGACTGCCCTCAGAAATATAAC  250

seq1  AGTTGGAGAACAAGGCATTTCGGTACATATGTGAATCTATTTTGTGAGAC  299
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  AGTTGGAGAACAAAGCA-TTCGGTACATATGTGAATCTATTTTGTGAGAC  299

seq1  TAAGTAAAAGGATTAAGAGTTTGAGGCC-TGCTATCGTGCTGGACACCTT  348
      ||||| ||||||||||||| |||||||| |||||||||||||||||||||
seq2  TAAGT-AAAGGATTAAGAG-TTGAGGCCTTGCTATCGTGCTGGACACCTT  347

seq1  TAATTCCACACATTTTGGAGGCAGAGGCAGGTGGATAATTGAGTTAG-AG  397
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TAATTCCACACATTTTGGAGGCAGAGGCAGGT-GATAATTGAGTTAGAAG  396

seq1  GGCAGCCTAGTCTATAGAACAAGTTCCAGAATAGCCAGAGCTACACAGAT  447
      ||| |||||||||||||| | |||| ||||||||||||||||||||||||
seq2  GGCTGCCTAGTCTATAGATC-AGTTTCAGAATAGCCAGAGCTACACAGAT  445

seq1  TAAC  451
      ||||
seq2  TAAC  449