BAC Information

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BAC

Clone NameB6Ng01-006N07
Chromosome16 (Build37)
Map Location 10,166,009 - 10,291,738
singlet/doubletdoublet
Overlap gene4930517K11Rik, Atf7ip2, Emp2
Upstream geneGrin2a, LOC665291, LOC100042534
Downstream geneTekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N07.bB6Ng01-006N07.g
ACCDH843576DH843577
length1,227520
definitionDH843576|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N07, 5' end.DH843577|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,166,009 - 10,167,243)(10,291,214 - 10,291,738)
sequence
gaattctttcactatctacactggaaacattttgtctgaatgagtagcat
tcttactaaaatcaaagcccaaggttggctcaacgatttcctaggatatt
ggaacactggtggaggctaatctaacttagctatattcaaaatcattcct
tggagacacttataataaaacaatattgaacaaaagcactcatatccatt
caccgactgacatagggacaagtttggagcatttgtgctatgagatgcca
agactccaggagacaaagtttccatgaaacattttgcctcagaactgcgt
ccaagcttttgggcctgtcactaggtttccactggagtgggtgtggcaca
tcctcatagcctctacatctagtttctatacttatcgaacctggcttcag
aatactgcccaagcaatcaggggaacatgaaaatattttttttcattatc
cccttttccttgctctaagccctatttctctctgtctggtctccctcccc
acactacataaatattttgtctctaagtgtgcaatgactgactgaagttg
gagccagataggagcagaaattgcagtacacacaccgcatccactgcatg
cactacagcatctgctctcaaaacaactctggatgtacatgcggatcatt
tgtctatgaattttatttttaactctagagtctgattctttagccctcta
cgtcctccacatccctctggaccatgtgcccttcctgactcctggttttc
tgcagtcagcctgtgctaatctaagcacatgagttatctctctatctgtc
tatctatctatctatctatctatctatctatctatctatctatccatccc
tctctctctctatctctctctatctctacctctacctctatctctctatc
tcttcctccataggctcagattttattacaacaacttggctttattcaaa
agcctggacaacaagtgaaacaaccacctcttcccaggacttggccacac
cctaatttcttaggtccccaagatgttgatacctctagacagcagaaaca
gtctaaagatctaagcacccctcatttccacttcactatccccttcctag
ttcttcattttttattaacaagatgagatgtttagtgtaggcatttccac
ctggctgtttctcaaggaactagcacctgctttattatcatcatctgcgt
tacctgctcatatacactagattgcag
agctctcatgtggttcttagcctacacacacacacacacacacacacaga
gagagagagagagagagagagagttaataaatggatcaataaatccacca
gggtaatgaaaattaaatctcctgtgagatttcacctcacccttatcaga
atgactctatcaggaacgcaaatgacaacattctcttcggtggtgtagcc
acttgtgagttgcctgattccagtgaacaaccccacccacactcatgcag
acatgtccaattaaactcagtgggtcacacaactatcagaaagacctgag
agtacaaaggaatttgttggaaagaagaggggatgctgtggggaaggaag
aggagggctgagagggaggagagggcatccgtgtgtatatgaagtactca
aagaagttaaagaaaacaaacaagatctcccaagacttttgaggtgcgag
agcgtgggaggagaggatgctaggacgtgagtgaggtagatgcaagggga
ggtcgtggtgtatggatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10166009_10167243
seq2: B6Ng01-006N07.b_46_1272

seq1  GAATTCTTTCACTATCTACACTGGAAACATTTTGTCTGAATGAGTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTATCTACACTGGAAACATTTTGTCTGAATGAGTAGCAT  50

seq1  TCTTACTAAAATCAAAGCCCAAGGTTGGCTCAACGATTTCCTAGGATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTAAAATCAAAGCCCAAGGTTGGCTCAACGATTTCCTAGGATATT  100

seq1  GGAACACTGGTGGAGGCTAATCTAACTTAGCTATATTCAAAATCATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTGGTGGAGGCTAATCTAACTTAGCTATATTCAAAATCATTCCT  150

seq1  TGGAGACACTTATAATAAAACAATATTGAACAAAAGCACTCATATCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACACTTATAATAAAACAATATTGAACAAAAGCACTCATATCCATT  200

seq1  CACCGACTGACATAGGGACAAGTTTGGAGCATTTGTGCTATGAGATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACTGACATAGGGACAAGTTTGGAGCATTTGTGCTATGAGATGCCA  250

seq1  AGACTCCAGGAGACAAAGTTTCCATGAAACATTTTGCCTCAGAACTGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGGAGACAAAGTTTCCATGAAACATTTTGCCTCAGAACTGCGT  300

seq1  CCAAGCTTTTGGGCCTGTCACTAGGTTTCCACTGGAGTGGGTGTGGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTTTGGGCCTGTCACTAGGTTTCCACTGGAGTGGGTGTGGCACA  350

seq1  TCCTCATAGCCTCTACATCTAGTTTCTATACTTATCGAACCTGGCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATAGCCTCTACATCTAGTTTCTATACTTATCGAACCTGGCTTCAG  400

seq1  AATACTGCCCAAGCAATCAGGGGAACATGAAAATATTTTTTTTCATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCCCAAGCAATCAGGGGAACATGAAAATATTTTTTTTCATTATC  450

seq1  CCCTTTTCCTTGCTCTAAGCCCTATTTCTCTCTGTCTGGTCTCCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCTTGCTCTAAGCCCTATTTCTCTCTGTCTGGTCTCCCTCCCC  500

seq1  ACACTACATAAATATTTTGTCTCTAAGTGTGCAATGACTGACTGAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATAAATATTTTGTCTCTAAGTGTGCAATGACTGACTGAAGTTG  550

seq1  GAGCCAGATAGGAGCAGAAATTGCAGTACACACACCGCATCCACTGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGATAGGAGCAGAAATTGCAGTACACACACCGCATCCACTGCATG  600

seq1  CACTACAGCATCTGCTCTCAAAACAACTCTGGATGTACATGCGGATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGCATCTGCTCTCAAAACAACTCTGGATGTACATGCGGATCATT  650

seq1  TGTCTATGAATTTTATTTTTAACTCTAGAGTCTGATTCTTTAGCCCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGAATTTTATTTTTAACTCTAGAGTCTGATTCTTTAGCCCTCTA  700

seq1  CGTCCTCCACATCCCTCTGGACCATGTGCCCTTCCTGACTCCTGGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTCCACATCCCTCTGGACCATGTGCCCTTCCTGACTCCTGGTTTTC  750

seq1  TGCAGTCAGCCTGTGCTAATCTAAGCACATGAGTTATCTCTCTATCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAGCCTGTGCTAATCTAAGCACATGAGTTATCTCTCTATCTGTC  800

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCC  850

seq1  TCTCTCTCTCTATCTCTCTCTATCTCTACCTCTACCTCTATCTCTCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTATCTCTCTCTATCTCTACCTCTACCTCTATCTCTCTATC  900

seq1  TCTTCCTCCATAGGCTCAGATTTTATTACAACAACTTGGCTTTATTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCATAGGCTCAGATTTTATTACAACAACTTGGCTTTATTCAAA  950

seq1  AGCCTGGACAACAAGTGAAACAACCACCTC-TCCCAGGACTTGGCCAACA  999
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AGCCTGGACAACAAGTGAAACAACCACCTCTTCCCAGGACTTGGCC-ACA  999

seq1  CCCTAATTTCTTAGGGTCCCCAAAGATGTTGATACCCCTAGACAGCAGGA  1049
      ||||||||||||| ||||||| |||||||||||||| |||||||||| ||
seq2  CCCTAATTTCTTA-GGTCCCC-AAGATGTTGATACCTCTAGACAGCA-GA  1046

seq1  AACAGTCTAAAGATCATAGCA-CCCTCATTTCCACTTCACTA-CCCCTTC  1097
      |||||||||||||||  |||| |||||||||||||||||||| |||||||
seq2  AACAGTCTAAAGATCTAAGCACCCCTCATTTCCACTTCACTATCCCCTTC  1096

seq1  CTAGTTCCTCATTTTTAATTAAACAAAAAGGGAGGAATGTTAGTGTACAG  1147
      ||||||| |||||||| ||| ||||| | | || |    |||||||  ||
seq2  CTAGTTCTTCATTTTTTATT-AACAAGATGAGATG---TTTAGTGT--AG  1140

seq1  GCAATTCCA-CTGGCCTGTTCTCAGGGACCTAGCAACTGCTT--ATATCA  1194
      ||| ||||| |||||   |||||| ||| |||||| ||||||   |||||
seq2  GCATTTCCACCTGGCTGTTTCTCAAGGAACTAGCACCTGCTTTATTATCA  1190

seq1  TCATCTGCCCCTATCACCTGCTACTACCACCAAGATTGCAG  1235
      ||||||||     | |||||||  ||    | |||||||||
seq2  TCATCTGC----GTTACCTGCTCATATACACTAGATTGCAG  1227

seq1: chr16_10291214_10291738
seq2: B6Ng01-006N07.g_66_591 (reverse)

seq1  ACCATCCCTACACCACGACCTCCCCTTGCATCTACCTCACTCACGTCCTA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCATACACCACGACCTCCCCTTGCATCTACCTCACTCACGTCCTA  50

seq1  GCATCCTCTCCTCCCACGCTCTCGCACCTC-AAAGTCTTGGGAGATCTTG  99
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCATCCTCTCCTCCCACGCTCTCGCACCTCAAAAGTCTTGGGAGATCTTG  100

seq1  TTTGTTTTCTTTAACTTCTTTGAGTACTTCATATACACACGGATGCCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTTTAACTTCTTTGAGTACTTCATATACACACGGATGCCCTC  150

seq1  TCCTCCCTCTCAGCCCTCCTCTTCCTTCCCCACAGCATCCCCTCTTCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCTCAGCCCTCCTCTTCCTTCCCCACAGCATCCCCTCTTCTTT  200

seq1  CCAACAAATTCCTTTGTACTCTCAGGTCTTTCTGATAGTTGTGTGACCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAATTCCTTTGTACTCTCAGGTCTTTCTGATAGTTGTGTGACCCA  250

seq1  CTGAGTTTAATTGGACATGTCTGCATGAGTGTGGGTGGGGTTGTTCACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTAATTGGACATGTCTGCATGAGTGTGGGTGGGGTTGTTCACTG  300

seq1  GAATCAGGCAACTCACAAGTGGCTACACCACCGAAGAGAATGTTGTCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGCAACTCACAAGTGGCTACACCACCGAAGAGAATGTTGTCATT  350

seq1  TGCGTTCCTGATAGAGTCATTCTGATAAGGGTGAGGTGAAATCTCACAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCCTGATAGAGTCATTCTGATAAGGGTGAGGTGAAATCTCACAGG  400

seq1  AGATTTAATTTTCATTACCCTGGTGGATTTATTGATCCATTTATTAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAATTTTCATTACCCTGGTGGATTTATTGATCCATTTATTAACTC  450

seq1  TCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTAGG  500

seq1  CTAAGAACCACATGAGAGCTGAATTC  525
      ||||||||||||||||||||||||||
seq2  CTAAGAACCACATGAGAGCTGAATTC  526