BAC Information

Click to search

BAC

Clone NameB6Ng01-006N17
Chromosome16 (Build37)
Map Location 65,489,576 - 65,662,013
singlet/doubletdoublet
Overlap genePou1f1, Chmp2b
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream geneEG383186, Vgll3, LOC664846, LOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N17.bB6Ng01-006N17.g
ACCDH843596DH843597
length1,1361,065
definitionDH843596|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N17, 5' end.DH843597|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,660,867 - 65,662,013)(65,489,576 - 65,490,661)
sequence
gaattcctcctgcctccttccctgtggcacgacattctcatgacatctgt
ttcttgtagaactatcaagaatcataagtagcttcttgtgctgcttaaat
aatggattcttctacctttccccccaacaactagtgttctctttttcttt
ttctttttttccttcttttgtcatatggaaaagataaataccagagccaa
aaaatatcagagaaaacaagaaccgagaatagaactctttgaacactgac
aatgagcaaaatatacttctgaagtatactcaaacatgttggaattcatg
ggctttcagtattcaatcaggccatatcaaaaccactacctgggaacttg
ttttcatatcagcctactcaaaaacctagctgaataccaagttagcacac
acctcaattccagctacttattgcttaccctacaagttgaagaccagtgg
taccagaatccatgtagaaggctgaggaaatgagaagacatttgcaacct
tggggaagcggaaggtggagtcaggagaatttgtctttctacctccgcca
tattgaatctatactcagacagagaaacccatacatctgaaagtcaataa
acaaacgcttccaaatgttgtggatgaaggagtactttgttgcactgtag
cttggataagtttgtcagagtagtcagttttgcagtctctgtcacgaact
gttctgagaaattagctggcatggatttcaccggaacacttggctgaaat
aggtaactaatgtgtctgcagtaggtgagtgccattgtgtggaaactcag
cagggaatgtacctattttagctttggcaaccctctccatgtagccagaa
cttcttgtggcagaggatgctgagttccaggagtgtccacaggacaagtt
gcctatgatcgccaagctggaaatgtagcatttattgtgattccaattca
aagttcatgagcatcattaggtcatatttctgctatttgtgagtcacagt
gtcatcctataaaacagtagaaaagatgtgtttgatcacaaatgtcctcc
ccactgacagggggttaaagaagagatttttttcttgaaggctatggtag
tagacgtcgattaaacacatcaaggctccaattaat
gaattcctgcctttctatttcatctagagaaacgttaggagtagaaatgg
atggcaagacagctggaaaaaaaaaaaagaagtactggggaatataaaaa
aaaaaatgttgagatttaaatgctaattttatgagtagtcagttgaatgt
tgcaggaaccagtgaagaaaacagatggtaacagccacttagtcgccatt
actatacatttcctgtaaagatgctatagactgggtagatgtgagtaata
aggtgtgcataagctggaagaactgtggctggcagccaattcctcactat
aggagctaatgagaaggaaatggcagtcttgagtaaattgtcatgaggta
agacccactccccaaagcaatggtggactattttgagactcgaactcacc
tgaaatgagcatcagctgtatagtgtcttaagggtacaaagacaataaag
ctctttgatacgattatatgacatgataaattattttgtgagttactttc
cttttagaaaaagtaatgtgtgtgtatacatacatatatatatgctatat
acatgcatatatatgtatatatcatatatttatatatcatataatgttat
gataggctccctgatttgcctacacatttactctgcattatatttaattg
aaaaaaaatgttatctgcatacagtggtaggaataatgagagaaacaatg
gcattaaataaataaataaaaagcatccacaaccactctatgagtttaaa
atatcttttaattgctttttaaataatttcaagtgtaacattaagttatt
atcctaggatagttcttttttttttttctgttttttgttgaaataggttt
ttctaatacaatatattctgattacattttcctctccttcaacttttctg
agagtccctcctaatgtccactcacttaaacccacaccctttctgtttct
cttagaacagacatataacaataaaataaataagtaaaaaaactgtatag
tacaaaacaaaaactaacgagaagaagaactcagactctttgaaactacc
tagcctcgaaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65660867_65662013
seq2: B6Ng01-006N17.b_47_1182 (reverse)

seq1  ATTAAATGGAGCCCTTGAATGTGTTTAATTTGACGTCTACTA-CATAGCC  49
      ||||| ||||| ||||| |||||||||| | ||||||||||| |||||||
seq2  ATTAATTGGAG-CCTTG-ATGTGTTTAA-TCGACGTCTACTACCATAGCC  47

seq1  TTCAAAGAAAAAAATCTCTTCCTTTAACCCACCTGTCAGT-GAGAGGACA  98
      ||| |||||||||||||||| ||||||||| ||||||||| | |||||||
seq2  TTC-AAGAAAAAAATCTCTT-CTTTAACCC-CCTGTCAGTGGGGAGGACA  94

seq1  TTTTGTGATCAGACACATCTGTTTCTACTGTTTTAATTAGGGTTGACACT  148
       |||||||||| |||||||| ||||||||||||||  || || |||||||
seq2  -TTTGTGATCAAACACATCT-TTTCTACTGTTTTA--TA-GGATGACACT  139

seq1  GTGACTCACAAATAGCAG-AATATGACCTTAATGATGCCTCATGAACTTT  197
      |||||||||||||||||| ||||||||| |||||||| ||||||||||||
seq2  GTGACTCACAAATAGCAGAAATATGACC-TAATGATG-CTCATGAACTTT  187

seq1  GAATTGGAATCACAATAAATGCTAACATTTCCAGCTTGGCGATCATAGGC  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATTGGAATCACAATAAATGCT-ACATTTCCAGCTTGGCGATCATAGGC  236

seq1  AACTTGTCCTGTGGACACTCCTGGAACTCAGCATCCTCTGCCACAAGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCCTGTGGACACTCCTGGAACTCAGCATCCTCTGCCACAAGAAG  286

seq1  TTCTGGCTACATGGAGAGGGTTGCCAAAGCTAAAATAGGTACATTCCCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTACATGGAGAGGGTTGCCAAAGCTAAAATAGGTACATTCCCTG  336

seq1  CTGAGTTTCCACACAATGGCACTCACCTACTGCAGACACATTAGTTACCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCCACACAATGGCACTCACCTACTGCAGACACATTAGTTACCT  386

seq1  ATTTCAGCCAAGTGTTCCGGTGAAATCCATGCCAGCTAATTTCTCAGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCCAAGTGTTCCGGTGAAATCCATGCCAGCTAATTTCTCAGAAC  436

seq1  AGTTCGTGACAGAGACTGCAAAACTGACTACTCTGACAAACTTATCCAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGTGACAGAGACTGCAAAACTGACTACTCTGACAAACTTATCCAAG  486

seq1  CTACAGTGCAACAAAGTACTCCTTCATCCACAACATTTGGAAGCGTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGCAACAAAGTACTCCTTCATCCACAACATTTGGAAGCGTTTGT  536

seq1  TTATTGACTTTCAGATGTATGGGTTTCTCTGTCTGAGTATAGATTCAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACTTTCAGATGTATGGGTTTCTCTGTCTGAGTATAGATTCAATA  586

seq1  TGGCGGAGGTAGAAAGACAAATTCTCCTGACTCCACCTTCCGCTTCCCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGAGGTAGAAAGACAAATTCTCCTGACTCCACCTTCCGCTTCCCCA  636

seq1  AGGTTGCAAATGTCTTCTCATTTCCTCAGCCTTCTACATGGATTCTGGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCAAATGTCTTCTCATTTCCTCAGCCTTCTACATGGATTCTGGTA  686

seq1  CCACTGGTCTTCAACTTGTAGGGTAAGCAATAAGTAGCTGGAATTGAGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTCTTCAACTTGTAGGGTAAGCAATAAGTAGCTGGAATTGAGGT  736

seq1  GTGTGCTAACTTGGTATTCAGCTAGGTTTTTGAGTAGGCTGATATGAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAACTTGGTATTCAGCTAGGTTTTTGAGTAGGCTGATATGAAAA  786

seq1  CAAGTTCCCAGGTAGTGGTTTTGATATGGCCTGATTGAATACTGAAAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCCAGGTAGTGGTTTTGATATGGCCTGATTGAATACTGAAAGCC  836

seq1  CATGAATTCCAACATGTTTGAGTATACTTCAGAAGTATATTTTGCTCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTCCAACATGTTTGAGTATACTTCAGAAGTATATTTTGCTCATT  886

seq1  GTCAGTGTTCAAAGAGTTCTATTCTCGGTTCTTGTTTTCTCTGATATTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTTCAAAGAGTTCTATTCTCGGTTCTTGTTTTCTCTGATATTTT  936

seq1  TTGGCTCTGGTATTTATCTTTTCCATATGACAAAAGAAGGAAAAAAAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTGGTATTTATCTTTTCCATATGACAAAAGAAGGAAAAAAAGAA  986

seq1  AAAGAAAAAGAGAACACTAGTTGTTGGGGGGAAAGGTAGAAGAATCCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAGAACACTAGTTGTTGGGGGGAAAGGTAGAAGAATCCATT  1036

seq1  ATTTAAGCAGCACAAGAAGCTACTTATGATTCTTGATAGTTCTACAAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCAGCACAAGAAGCTACTTATGATTCTTGATAGTTCTACAAGAA  1086

seq1  ACAGATGTCATGAGAATGTCGTGCCACAGGGAAGGAGGCAGGAGGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTCATGAGAATGTCGTGCCACAGGGAAGGAGGCAGGAGGAATTC  1136

seq1: chr16_65489576_65490661
seq2: B6Ng01-006N17.g_68_1132

seq1  GAATTCCTGCCTTTCTATTTCATCTAGAGAAACGTTAGGAGTAGAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTTTCTATTTCATCTAGAGAAACGTTAGGAGTAGAAATGG  50

seq1  ATGGCAAGACAGCTGGAAAAAAAAAAAAGAAGTACTGGGGAATATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGACAGCTGGAAAAAAAAAAAAGAAGTACTGGGGAATATAAAAA  100

seq1  AAAAAATGTTGAGATTTAAATGCTAATTTTATGAGTAGTCAGTTGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTTGAGATTTAAATGCTAATTTTATGAGTAGTCAGTTGAATGT  150

seq1  TGCAGGAACCAGTGAAGAAAACAGATGGTAACAGCCACTTAGTCGCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAACCAGTGAAGAAAACAGATGGTAACAGCCACTTAGTCGCCATT  200

seq1  ACTATACATTTCCTGTAAAGATGCTATAGACTGGGTAGATGTGAGTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACATTTCCTGTAAAGATGCTATAGACTGGGTAGATGTGAGTAATA  250

seq1  AGGTGTGCATAAGCTGGAAGAACTGTGGCTGGCAGCCAATTCCTCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCATAAGCTGGAAGAACTGTGGCTGGCAGCCAATTCCTCACTAT  300

seq1  AGGAGCTAATGAGAAGGAAATGGCAGTCTTGAGTAAATTGTCATGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAATGAGAAGGAAATGGCAGTCTTGAGTAAATTGTCATGAGGTA  350

seq1  AGACCCACTCCCCAAAGCAATGGTGGACTATTTTGAGACTCGAACTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACTCCCCAAAGCAATGGTGGACTATTTTGAGACTCGAACTCACC  400

seq1  TGAAATGAGCATCAGCTGTATAGTGTCTTAAGGGTACAAAGACAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGCATCAGCTGTATAGTGTCTTAAGGGTACAAAGACAATAAAG  450

seq1  CTCTTTGATACGATTATATGACATGATAAATTATTTTGTGAGTTACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGATACGATTATATGACATGATAAATTATTTTGTGAGTTACTTTC  500

seq1  CTTTTAGAAAAAGTAATGTGTGTGTATACATACATATATATATGCTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAAAAAGTAATGTGTGTGTATACATACATATATATATGCTATAT  550

seq1  ACATGCATATATATGTATATATCATATATTTATATATCATATAATGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATATATATGTATATATCATATATTTATATATCATATAATGTTAT  600

seq1  GATAGGCTCCCTGATTTGCCTACACATTTACTCTGCATTATATTTAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTCCCTGATTTGCCTACACATTTACTCTGCATTATATTTAATTG  650

seq1  AAAAAAAATGTTATCTGCATACAGTGGTAGGAATAATGAGAGAAACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGTTATCTGCATACAGTGGTAGGAATAATGAGAGAAACAATG  700

seq1  GCATTAAATAAATAAATAAAAAGCATCCACAACCACTCTATGAGTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAATAAATAAATAAAAAGCATCCACAACCACTCTATGAGTTTAAA  750

seq1  ATATCTTTTAATTGCTTTTTAAATAATTTCAAGTGTAACATTAAGTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTAATTGCTTTTTAAATAATTTCAAGTGTAACATTAAGTTATT  800

seq1  ATCCTAGGATAGTTC-TTTTTTTTTTTCTGTTTTTTGTTGAAATAGGTTT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGATAGTTCTTTTTTTTTTTTCTGTTTTTTGTTGAAATAGGTTT  850

seq1  TTCTAATACAATATATTCTGATTACATTTTCCTCTCCTTCAACTTTTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATACAATATATTCTGATTACATTTTCCTCTCCTTCAACTTTTCTG  900

seq1  AGAGTCCCTCCTAATGTCCACTCCACTTAAACCCACACCCTTTCTGTTTC  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAGTCCCTCCTAATGTCCACT-CACTTAAACCCACACCCTTTCTGTTTC  949

seq1  TCTTAGAAAACAGACATATAAACAATAAAAATAAAATAAAAGTTAAAAAA  999
      ||||||  ||||||||||| |||||| |||||||   | ||||    |||
seq2  TCTTAG--AACAGACATAT-AACAAT-AAAATAA---ATAAGT----AAA  988

seq1  AAAACTGTAATAGTACAAAACAAAAAACCAACAGAAGAAGAAGAACTCAA  1049
      |||||||| |||||||||||| |||||| |||   ||||||||||||| |
seq2  AAAACTGT-ATAGTACAAAAC-AAAAACTAAC--GAGAAGAAGAACTC-A  1033

seq1  GACTCTTTGAGAACTACACATAGCCTCAGAGAAGTGC  1086
      |||||||||| ||||  || ||||||| || ||||||
seq2  GACTCTTTGA-AACT--ACCTAGCCTC-GA-AAGTGC  1065