BAC Information

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BAC

Clone NameB6Ng01-007H08
Chromosome16 (Build37)
Map Location 30,674,109 - 30,674,723
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623
Downstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007H08.bB6Ng01-007H08.g
ACCDH844021DH844022
length508616
definitionDH844021|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H08, 5' end.DH844022|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tctgtctctagactctagtcatactgatacacaaatagcttagagcaaag
ggagggaagcggcacaccagggactcgatcacgaaatttgcaagcagtgt
tgccgatcaagcgctcctggtcaaggtcaacttacagcttctggggtttg
agtcacaggaacagaaatgttctagagcggatgtgtgggtacatagtggt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatcagagtagagaaatgttt
cgtagtattgtataggacatcatgaggtgctcataattctttctattatg
gagtctaatttttgttcagattccagcagtgagctactcttcctgccaaa
atatagagcaggatataattcctttctattcattctgtggtgaataacac
atcaggtaattgaaagatacagccatagtccacagctgaatggtgaatcc
tttctgtgtgaagaaggaacccgtggctggtacctcacagagtctattag
agagatgg
gaattcttgcaccagatcacacagatatcacccaccacaggcatcctgtc
caaactcctggaaaacaaacacatctagtatagcttttagtttccgctgt
ctggtgtcatgaggcctgccttcacccagtggatcccaatttgcagaaca
ccgagatttctagggctcagttaaggagggtaatgcttgcctgaaaggct
cgccctactttacagatgaaagcatggccccatttaacacttgaagcatg
gctaataatctaggcatgtggctgtcccactcccaatttcctccatgtca
ttcacagtgcaaaggtgtatttataacgattatgttctttgatgctatgt
gaagtcaggttgtgataagtggtgtataatatgttcatattacataagga
aatcaaagcacacagagataatgacaaagtagcaagctagtcagatactg
aaccagcaaggatccaaagccctgctcgactgtcttccagttcagtactc
gcccttctaactcatgaaaagtgaacagcatctatgccttttctgtttta
gttgttttgttttattttatttctggtttgtttttctaagacagtctcgc
gatggagcccaggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30674109_30674723
seq2: B6Ng01-007H08.g_68_683 (reverse)

seq1  CAGCCTGGGCTCCATCGCGAGACTGTCTTAGAAAAACAAACCAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGCTCCATCGCGAGACTGTCTTAGAAAAACAAACCAGAAATAA  50

seq1  AATAAAACAAAACAACTAAAACAGAAAAGGCATAGATGCTGTTCAC-TTT  99
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATAAAACAAAACAACTAAAACAGAAAAGGCATAGATGCTGTTCACTTTT  100

seq1  CATGAGTTAGAAGGGCGAGTACTGAACTGGAAGACAGTCGAGCAGGGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTAGAAGGGCGAGTACTGAACTGGAAGACAGTCGAGCAGGGCTT  150

seq1  TGGATCCTTGCTGGTTCAGTATCTGACTAGCTTGCTACTTTGTCATTATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTTGCTGGTTCAGTATCTGACTAGCTTGCTACTTTGTCATTATC  200

seq1  TCTGTGTGCTTTGATTTCCTTATGTAATATGAACATATTATACACCACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCTTTGATTTCCTTATGTAATATGAACATATTATACACCACTT  250

seq1  ATCACAACCTGACTTCACATAGCATCAAAGAACATAATCGTTATAAATAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACCTGACTTCACATAGCATCAAAGAACATAATCGTTATAAATAC  300

seq1  ACCTTTGCACTGTGAATGACATGGAGGAAATTGGGAGTGGGACAGCCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCACTGTGAATGACATGGAGGAAATTGGGAGTGGGACAGCCACA  350

seq1  TGCCTAGATTATTAGCCATGCTTCAAGTGTTAAATGGGGCCATGCTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGATTATTAGCCATGCTTCAAGTGTTAAATGGGGCCATGCTTTCA  400

seq1  TCTGTAAAGTAGGGCGAGCCTTTCAGGCAAGCATTACCCTCCTTAACTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAGTAGGGCGAGCCTTTCAGGCAAGCATTACCCTCCTTAACTGA  450

seq1  GCCCTAGAAATCTCGGTGTTCTGCAAATTGGGATCCACTGGGTGAAGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGAAATCTCGGTGTTCTGCAAATTGGGATCCACTGGGTGAAGGCA  500

seq1  GGCCTCATGACACCAGACAGCGGAAACTAAAAGCTATACTAGATGTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATGACACCAGACAGCGGAAACTAAAAGCTATACTAGATGTGTTT  550

seq1  GTTTTCCAGGAGTTTGGACAGGATGCCTGTGGTGGGTGATATCTGTGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCAGGAGTTTGGACAGGATGCCTGTGGTGGGTGATATCTGTGTGA  600

seq1  TCTGGTGCAAGAATTC  615
      ||||||||||||||||
seq2  TCTGGTGCAAGAATTC  616