BAC Information

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BAC

Clone NameB6Ng01-007P05
Chromosome16 (Build37)
Map Location 72,090,149 - 72,214,541
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007P05.bB6Ng01-007P05.g
ACCDH844372DH844373
length1,155408
definitionDH844372|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P05, 5' end.DH844373|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,090,149 - 72,091,317)(72,214,128 - 72,214,541)
sequence
gaattccatcaggcatttaatcagcatagctgtgtgttttgaagaaaccc
ttttggcttcaccttgtctcaaagctagcactctttttgactcttttccc
ttcttatactgtgcattcagagccatgaaaagcccagagccactgaatat
agaccttttcctctaaaataaaataatgtatgcaattagttactgctgag
agcatgcagcacaactaaaaagtgttaaacactagcatctcatctgtatc
cttcaataagtatacatatatcttaccgtatttttgcttccccactttct
catatcatctatagcagctttgaacatttattcaccaacccagcagcctc
tcaacacaaaatcagccactgaaagcaaatatattgcttcaccatcttga
ataaacgtttagcacaagttaacaaatttctttgcattgctgatcaagcc
cattttcataaatcaggctctaaatatgttgctattgctttaaactttgc
gaattacctgcatttaccggaatggaagcatgacctaggtatgtttctgt
ccagaatctactcaaatcctttcagtggtagtaatgagacctgaatgtgt
tctgtgctttttatgtttcctttaagcatcccatttttcacctaaaagga
cagcatcttcagtgaatgtatgctattcagaatgtttactgtgttagaaa
tgaattttacaatatgagatactgcatcattcttttattactttgccaca
taattagttgtctttgaatgatcatgctatattacagtttgacttgttat
ttttccatggagatatatacaaattgctgcaacagatactgtgaccaagg
caactcttataaaggacaacacttacaggttcagaggtttcagtccatta
tcatcaattccagaaacatgggaacatccaggcaggcatggtgcagaagg
agatctgagagttctacatcttagtttgaaggttgctagcagaatactgg
cttccagcagctaggataaggtcttaaagccataacccatagtgactcac
ttacaccacagggcccagcttctaatatgccactcctagcaagcatatac
aaccacccacattacattggtctggtatattacattgagcatacatggtg
tttgt
atactaagataattaaaagatgagccctgatgttctcaggcaaaatattt
accaagaaaactttagaagggaggaaaaagttttagcattcatttagaac
ggagagactccagtgcccagggaactggtggtttcatcggtccattggta
cgctcaggggtatgtgatttgaaaaacttatttgtaaaatgcttaataga
gcattaaactttccagtcttacaaagattggcaaaataattttaaatggc
aatagttgcctgtacaaaaattaatattcataaagagataagcctaaagg
gaaaacgagatcattatggtcttagagaaaaataaatatgtattcatttt
tttctgtatttctgactcagggcataagagtgattgtgtgtgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72090149_72091317
seq2: B6Ng01-007P05.b_46_1200

seq1  GAATTCCATCAGGCATTTAATCAGCATAGCTGTGTGTTTTGAAGAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGGCATTTAATCAGCATAGCTGTGTGTTTTGAAGAAACCC  50

seq1  TTTTGGCTTCACCTTGTCTCAAAGCTAGCACTCTTTTTGACTCTTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTCACCTTGTCTCAAAGCTAGCACTCTTTTTGACTCTTTTCCC  100

seq1  TTCTTATACTGTGCATTCAGAGCCATGAAAAGCCCAGAGCCACTGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATACTGTGCATTCAGAGCCATGAAAAGCCCAGAGCCACTGAATAT  150

seq1  AGACCTTTTCCTCTAAAATAAAATAATGTATGCAATTAGTTACTGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTTCCTCTAAAATAAAATAATGTATGCAATTAGTTACTGCTGAG  200

seq1  AGCATGCAGCACAACTAAAAAGTGTTAAACACTAGCATCTCATCTGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAGCACAACTAAAAAGTGTTAAACACTAGCATCTCATCTGTATC  250

seq1  CTTCAATAAGTATACATATATCTTACCGTATTTTTGCTTCCCCACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATAAGTATACATATATCTTACCGTATTTTTGCTTCCCCACTTTCT  300

seq1  CATATCATCTATAGCAGCTTTGAACATTTATTCACCAACCCAGCAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATCTATAGCAGCTTTGAACATTTATTCACCAACCCAGCAGCCTC  350

seq1  TCAACACAAAATCAGCCACTGAAAGCAAATATATTGCTTCACCATCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAAAATCAGCCACTGAAAGCAAATATATTGCTTCACCATCTTGA  400

seq1  ATAAACGTTTAGCACAAGTTAACAAATTTCTTTGCATTGCTGATCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTTTAGCACAAGTTAACAAATTTCTTTGCATTGCTGATCAAGCC  450

seq1  CATTTTCATAAATCAGGCTCTAAATATGTTGCTATTGCTTTAAACTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATAAATCAGGCTCTAAATATGTTGCTATTGCTTTAAACTTTGC  500

seq1  GAATTACCTGCATTTACCGGAATGGAAGCATGACCTAGGTATGTTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACCTGCATTTACCGGAATGGAAGCATGACCTAGGTATGTTTCTGT  550

seq1  CCAGAATCTACTCAAATCCTTTCAGTGGTAGTAATGAGACCTGAATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTACTCAAATCCTTTCAGTGGTAGTAATGAGACCTGAATGTGT  600

seq1  TCTGTGCTTTTTATGTTTCCTTTAAGCATCCCATTTTTCACCTAAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTTTTATGTTTCCTTTAAGCATCCCATTTTTCACCTAAAAGGA  650

seq1  CAGCATCTTCAGTGAATGTATGCTATTCAGAATGTTTACTGTGTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTTCAGTGAATGTATGCTATTCAGAATGTTTACTGTGTTAGAAA  700

seq1  TGAATTTTACAATATGAGATACTGCATCATTCTTTTATTACTTTGCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTACAATATGAGATACTGCATCATTCTTTTATTACTTTGCCACA  750

seq1  TAATTAGTTGTCTTTGAATGATCATGCTATATTACAGTTTGACTTGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTGTCTTTGAATGATCATGCTATATTACAGTTTGACTTGTTAT  800

seq1  TTTTCCATGGAGATATATACAAAATTGCTGCAACAGATACTGTGACCAAG  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTCCATGGAGATATATAC-AAATTGCTGCAACAGATACTGTGACCAAG  849

seq1  GCAACTCTTAT-AAGGACAACACTTACAGGTTCAGAGG-TTCAGTCCATT  898
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GCAACTCTTATAAAGGACAACACTTACAGGTTCAGAGGTTTCAGTCCATT  899

seq1  ATCATCAATTCCAGAAACATGGGAACATCCAGGCAGGCATGGTGCAGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAATTCCAGAAACATGGGAACATCCAGGCAGGCATGGTGCAGAAG  949

seq1  GAGAATCTGAGAGTTCTACATCTTAGTTTGAAGGCTGCTAGCAGAATACT  998
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAG-ATCTGAGAGTTCTACATCTTAGTTTGAAGGTTGCTAGCAGAATACT  998

seq1  GGCTTCCAGGCAGCTAGGATAAAGGTCTTAAAGCCAATACCCATAGTGAC  1048
      |||||||| ||||||||||| |||||||||||||||  ||||||||||||
seq2  GGCTTCCA-GCAGCTAGGAT-AAGGTCTTAAAGCCATAACCCATAGTGAC  1046

seq1  TCACCTACACCACCAGGGCCACAGCTTCTAATAGTGCCACTCCCTAGGCC  1098
      |||| ||||||| ||||||| |||||||||||| ||||||| |||||  |
seq2  TCACTTACACCA-CAGGGCC-CAGCTTCTAATA-TGCCACT-CCTAG--C  1090

seq1  AAGCATATACAAACCACCACATTACATATGTTCTTGTCATGTATTACA-T  1147
      |||||||||||| |  ||||||||||| || ||| |   | ||||||| |
seq2  AAGCATATACAACCACCCACATTACAT-TGGTCTGG---TATATTACATT  1136

seq1  GTGCATACATATGGTTGTTTGT  1169
      | ||||||||   | |||||||
seq2  GAGCATACAT---GGTGTTTGT  1155

seq1: chr16_72214128_72214541
seq2: B6Ng01-007P05.g_67_480 (reverse)

seq1  CACACACACACACACACACACACAATCACTCTTATGCCCTGAGTCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAATCACTCTTATGCCCTGAGTCAGAAA  50

seq1  TACAGAAAAAAATGAATACATATTTATTTTTCTCTAAGACCATAATGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAAAATGAATACATATTTATTTTTCTCTAAGACCATAATGATC  100

seq1  TCGTTTTCCCTTTAGGCTTATCTCTTTATGAATATTAATTTTTGTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTCCCTTTAGGCTTATCTCTTTATGAATATTAATTTTTGTACAGG  150

seq1  CAACTATTGCCATTTAAAATTATTTTGCCAATCTTTGTAAGACTGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTGCCATTTAAAATTATTTTGCCAATCTTTGTAAGACTGGAAAG  200

seq1  TTTAATGCTCTATTAAGCATTTTACAAATAAGTTTTTCAAATCACATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTCTATTAAGCATTTTACAAATAAGTTTTTCAAATCACATACC  250

seq1  CCTGAGCGTACCAATGGACCGATGAAACCACCAGTTCCCTGGGCACTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCGTACCAATGGACCGATGAAACCACCAGTTCCCTGGGCACTGGA  300

seq1  GTCTCTCCGTTCTAAATGAATGCTAAAACTTTTTCCTCCCTTCTAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCGTTCTAAATGAATGCTAAAACTTTTTCCTCCCTTCTAAAGTT  350

seq1  TTCTTGGTAAATATTTTGCCTGAGAACATCAGGGCTCATCTTTTAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTAAATATTTTGCCTGAGAACATCAGGGCTCATCTTTTAATTAT  400

seq1  CTTAGTATGAATTC  414
      ||||||||||||||
seq2  CTTAGTATGAATTC  414