BAC Information

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BAC

Clone NameB6Ng01-008B21
Chromosome16 (Build37)
Map Location 76,883,481 - 77,012,757
singlet/doubletdoublet
Overlap geneLOC665120
Upstream geneSamsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik
Downstream geneUsp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008B21.bB6Ng01-008B21.g
ACCDH844482DH844483
length1,1591,094
definitionDH844482|Mus musculus domesticus DNA, BAC clone: B6Ng01-008B21, 5' end.DH844483|Mus musculus domesticus DNA, BAC clone: B6Ng01-008B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,883,481 - 76,884,641)(77,011,658 - 77,012,757)
sequence
gaattctacactcaatgattgagcaacaaacactcttctgagccatctct
tctgcccatggttctgctttctgttgtgattaaaaggtggtgtgatattc
taacaagtgccatgttattgaaattttagccttttaaaccttcagccccc
accccaaattcttcccattaaacataatccagtctcagatattttgcttt
atcagcagaaaacaaactgaaacatgatcaaaagcaccatagttttcagg
tgttagagagctgcctcaatggtcaaaaccacacgttgctctttcagagg
agcctgacttgattcccagcacctgcataatggtttacacccagcatcca
taagcctggatctaggggagccaacaggcaggtaggcaaagtattcatat
gtataaagtaaaataaataaaataggcattcagataagaacacccccaga
gtttcttctactatctcccatttccaagcattccaatgactctgacaatc
attcttcaattaggaatgtctatctgtaaaggaggagcaaaggaaaagtc
taacattagtcaagaattagaaggccatcaaactgatcagatagaaaagg
ttacccaaagtagatgtattaacacacatctttaactttaatattcagag
caatgagacaaaaagctgagaatacaaaatgaatttgaagctgggtgtgg
tggcacacaccattaatcccagctctcgggaggcagaggcaggcagattt
ctgagtttgaggccagcctggtctacaaagtgagttccaggacagccaga
gctacacagagaaaccctgtcttgaaccccccaccccaaaaaaaacacaa
caaaagtgaattgagaccagcctaggctacatagcaagaccctgtttaaa
atcaaaacaaagaaaggaacaaacagactctcactgtgtgtgtatctttc
actcccgctttctttttttgtatgtgtatgcacacatgtgtaagaataca
tatccataatggatgttaaatgaatattcttaaagaaaagaataaatagc
tgtcaaataagtattaatataagttaatgaataaataagaatgttaagcc
aataatctaaattagagatgaggccaaagtgttaaatgtctgtataatta
ttttgcaaa
gaattccagagcacatgctgtttatgagaacacagacccggagagcacgt
gtctgagaatggacctcagagctacgtttccacagttagagacctcagcg
ctgtaacttctcattcacagagtagctttgtgattctccacaggggagag
agttttacaaggtcattttcttccattcaaaagtacaaaaattacctgag
atttgagatactgctcactagtagtaagcatggaagcacatagctacaca
tttgatcttcaggaccactgcttttaaaaagttaaaaattaatgtgaaaa
aactattacaatggtttttttttaaatctattgccagatattcaacttta
acttcaggaatttggtagtacaataattccccagagtttcattatttagt
cttagttttaaaatctttagtacctacctagtagataaaagtttaatagc
ccacctagagatttaatttccagctcatttctgaagatttcttactcatt
caatgatttttggcacactgtcaattgtccaagtatatgattttgagata
acttatttgtaggttaacttatatgtgtttcttttttaaaaagattgtaa
ttggaataattggagagcagaaatttgtgaattaacataaattagtacaa
aagcccgtttttgagaatttgcgtatctgtcagctttgctgctcatgtat
ttagacctttgtcgtgtatttagaggctttgaaagacctggtagctggaa
ctgtagagtcacagaatattgcatatgaactcgtaccctactacattaca
tgattgatattcggtgaaaaattatatgaaatacaaatcaagtgtttact
catgatataatctgaggatttctcaggcatactgacttaaggtccacggt
gacaggattgggaattgaggcctcagaaaggtgaataagtataaaattct
accatcgtgaattaattaataatgagtgatatcaaagagtattatgaaca
acaaaatccttctttcttgtcacaatcttggtgaagcgcggtctcacaca
cattaaccacacttcttgcatgtgtggtgcatccaaaaagtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76883481_76884641
seq2: B6Ng01-008B21.b_45_1203

seq1  GAATTCTACACTCAATGATTGAGCAACAAACACTCTTCTGAGCCATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTCAATGATTGAGCAACAAACACTCTTCTGAGCCATCTCT  50

seq1  TCTGCCCATGGTTCTGCTTTCTGTTGTGATTAAAAGGTGGTGTGATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCATGGTTCTGCTTTCTGTTGTGATTAAAAGGTGGTGTGATATTC  100

seq1  TAACAAGTGCCATGTTATTGAAATTTTAGCCTTTTAAACCTTCAGCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTGCCATGTTATTGAAATTTTAGCCTTTTAAACCTTCAGCCCCC  150

seq1  ACCCCAAATTCTTCCCATTAAACATAATCCAGTCTCAGATATTTTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAATTCTTCCCATTAAACATAATCCAGTCTCAGATATTTTGCTTT  200

seq1  ATCAGCAGAAAACAAACTGAAACATGATCAAAAGCACCATAGTTTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGAAAACAAACTGAAACATGATCAAAAGCACCATAGTTTTCAGG  250

seq1  TGTTAGAGAGCTGCCTCAATGGTCAAAACCACACGTTGCTCTTTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGAGCTGCCTCAATGGTCAAAACCACACGTTGCTCTTTCAGAGG  300

seq1  AGCCTGACTTGATTCCCAGCACCTGCATAATGGTTTACACCCAGCATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACTTGATTCCCAGCACCTGCATAATGGTTTACACCCAGCATCCA  350

seq1  TAAGCCTGGATCTAGGGGAGCCAACAGGCAGGTAGGCAAAGTATTCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGGATCTAGGGGAGCCAACAGGCAGGTAGGCAAAGTATTCATAT  400

seq1  GTATAAAGTAAAATAAATAAAATAGGCATTCAGATAAGAACACCCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAGTAAAATAAATAAAATAGGCATTCAGATAAGAACACCCCCAGA  450

seq1  GTTTCTTCTACTATCTCCCATTTCCAAGCATTCCAATGACTCTGACAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTACTATCTCCCATTTCCAAGCATTCCAATGACTCTGACAATC  500

seq1  ATTCTTCAATTAGGAATGTCTATCTGTAAAGGAGGAGCAAAGGAAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAATTAGGAATGTCTATCTGTAAAGGAGGAGCAAAGGAAAAGTC  550

seq1  TAACATTAGTCAAGAATTAGAAGGCCATCAAACTGATCAGATAGAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAGTCAAGAATTAGAAGGCCATCAAACTGATCAGATAGAAAAGG  600

seq1  TTACCCAAAGTAGATGTATTAACACACATCTTTAACTTTAATATTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAAAGTAGATGTATTAACACACATCTTTAACTTTAATATTCAGAG  650

seq1  CAATGAGACAAAAAGCTGAGAATACAAAATGAATTTGAAGCTGGGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGACAAAAAGCTGAGAATACAAAATGAATTTGAAGCTGGGTGTGG  700

seq1  TGGCACACACCATTAATCCCAGCTCTCGGGAGGCAGAGGCAGGCAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACACCATTAATCCCAGCTCTCGGGAGGCAGAGGCAGGCAGATTT  750

seq1  CTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGA  800

seq1  GCTACACAGAGAAACCCTGTCTTGAACCCCCCACCCCAAAAAAAACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTTGAACCCCCCACCCCAAAAAAAACACAA  850

seq1  C-AAAGTGAATTGAGACCAGCCTAGGCTACATAGCAAGACCCTGTTTAAA  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGAATTGAGACCAGCCTAGGCTACATAGCAAGACCCTGTTTAAA  900

seq1  ATCAAAACAAAGAAAGGAACAAACAAGACTCTCACTGTGTGTGTATCTTT  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCAAAACAAAGAAAGGAACAAAC-AGACTCTCACTGTGTGTGTATCTTT  949

seq1  CACTCCCGCTTTCTTTTTTTGTATGTGTATGCACACATGTGTAAAGAATA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTCCCGCTTTCTTTTTTTGTATGTGTATGCACACATGTGT-AAGAATA  998

seq1  CATATCCATTAATGGATGTTAAATGAATATTC-TAAAG-AAAGAATAAAT  1047
      |||||||| ||||||||||||||||||||||| ||||| |||||||||||
seq2  CATATCCA-TAATGGATGTTAAATGAATATTCTTAAAGAAAAGAATAAAT  1047

seq1  AGCCGTGGAAATAAGTA-TAATATAAAGTAAATGAATAAATAAG-ATGTA  1095
      ||| ||  ||||||||| |||||| |||| |||||||||||||| |||| 
seq2  AGCTGT-CAAATAAGTATTAATAT-AAGTTAATGAATAAATAAGAATGTT  1095

seq1  AGGCCAATAAATCTAAA-TAAAGAGTAGGCAAAAGTGTAAAATGTCTGTA  1144
      | |||||| |||||||| || |||  |||| ||||||| |||||||||||
seq2  AAGCCAAT-AATCTAAATTAGAGATGAGGCCAAAGTGTTAAATGTCTGTA  1144

seq1  TAATTTATATTTGCAAA  1161
      ||| |||| ||||||||
seq2  TAA-TTAT-TTTGCAAA  1159

seq1: chr16_77011658_77012757
seq2: B6Ng01-008B21.g_64_1157 (reverse)

seq1  AGGACCTTTGTGATGCACCACACATGGCAGAAGGTGT-GTGTATGTGTGT  49
      ||||| |||  |||||||||||||||  |||| |||| ||  ||||||||
seq2  AGGACTTTTTGGATGCACCACACATGCAAGAA-GTGTGGTTAATGTGTGT  49

seq1  GAGA-CGCGCGTGCACAAGA-TGTGACAAGAGAGGAAGGATTTTGTTTGT  97
      |||| ||||| |   ||||| |||||||||| | ||||||||||| ||||
seq2  GAGACCGCGCTTCACCAAGATTGTGACAAGA-AAGAAGGATTTTG-TTGT  97

seq1  TCATAATACTCTTTTGATATTCACTCATTATTAATTAATTCACGATGGTA  147
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TCATAATACTC-TTTGATA-TCACTCATTATTAATTAATTCACGATGGTA  145

seq1  GAATTTTTATACCTTATTCACCTTTCCTGAGGCCTCAATTCCCAATCCTG  197
      ||| ||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GAA-TTTTATA-CTTATTCACCTTT-CTGAGGCCTCAATTCCCAATCCTG  192

seq1  TCACCGTGGACCTTAAGTCAGTATGCCCTGAGAAATCCTCAGATTATATC  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCACCGTGGACCTTAAGTCAGTATG-CCTGAGAAATCCTCAGATTATATC  241

seq1  ATGAGTAAACACTTGATTTGTATTTCATATAATTTTTCACCGAATATCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAAACACTTGATTTGTATTTCATATAATTTTTCACCGAATATCAA  291

seq1  TCATGTAATGTAGTAGGGTACGAGTTCATATGCAATATTCTGTGACTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAATGTAGTAGGGTACGAGTTCATATGCAATATTCTGTGACTCTA  341

seq1  CAGTTCCAGCTACCAGGTCTTTCAAAGCCTCTAAATACACGACAAAGGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGCTACCAGGTCTTTCAAAGCCTCTAAATACACGACAAAGGTC  391

seq1  TAAATACATGAGCAGCAAAGCTGACAGATACGCAAATTCTCAAAAACGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATGAGCAGCAAAGCTGACAGATACGCAAATTCTCAAAAACGGG  441

seq1  CTTTTGTACTAATTTATGTTAATTCACAAATTTCTGCTCTCCAATTATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTACTAATTTATGTTAATTCACAAATTTCTGCTCTCCAATTATTC  491

seq1  CAATTACAATCTTTTTAAAAAAGAAACACATATAAGTTAACCTACAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAATCTTTTTAAAAAAGAAACACATATAAGTTAACCTACAAATA  541

seq1  AGTTATCTCAAAATCATATACTTGGACAATTGACAGTGTGCCAAAAATCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTCAAAATCATATACTTGGACAATTGACAGTGTGCCAAAAATCA  591

seq1  TTGAATGAGTAAGAAATCTTCAGAAATGAGCTGGAAATTAAATCTCTAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAGTAAGAAATCTTCAGAAATGAGCTGGAAATTAAATCTCTAGG  641

seq1  TGGGCTATTAAACTTTTATCTACTAGGTAGGTACTAAAGATTTTAAAACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATTAAACTTTTATCTACTAGGTAGGTACTAAAGATTTTAAAACT  691

seq1  AAGACTAAATAATGAAACTCTGGGGAATTATTGTACTACCAAATTCCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAATAATGAAACTCTGGGGAATTATTGTACTACCAAATTCCTGA  741

seq1  AGTTAAAGTTGAATATCTGGCAATAGATTTAAAAAAAAACCATTGTAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGTTGAATATCTGGCAATAGATTTAAAAAAAAACCATTGTAATA  791

seq1  GTTTTTTCACATTAATTTTTAACTTTTTAAAAGCAGTGGTCCTGAAGATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCACATTAATTTTTAACTTTTTAAAAGCAGTGGTCCTGAAGATC  841

seq1  AAATGTGTAGCTATGTGCTTCCATGCTTACTACTAGTGAGCAGTATCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTAGCTATGTGCTTCCATGCTTACTACTAGTGAGCAGTATCTCA  891

seq1  AATCTCAGGTAATTTTTGTACTTTTGAATGGAAGAAAATGACCTTGTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGTAATTTTTGTACTTTTGAATGGAAGAAAATGACCTTGTAAA  941

seq1  ACTCTCTCCCCTGTGGAGAATCACAAAGCTACTCTGTGAATGAGAAGTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCCCTGTGGAGAATCACAAAGCTACTCTGTGAATGAGAAGTTA  991

seq1  CAGCGCTGAGGTCTCTAACTGTGGAAACGTAGCTCTGAGGTCCATTCTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTGAGGTCTCTAACTGTGGAAACGTAGCTCTGAGGTCCATTCTCA  1041

seq1  GACACGTGCTCTCCGGGTCTGTGTTCTCATAAACAGCATGTGCTCTGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTGCTCTCCGGGTCTGTGTTCTCATAAACAGCATGTGCTCTGGAA  1091

seq1  TTC  1100
      |||
seq2  TTC  1094