BAC Information

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BAC

Clone NameB6Ng01-011B14
Chromosome16 (Build37)
Map Location 76,446,620 - 76,567,124
singlet/doubletdoublet
Overlap genenone
Upstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
Downstream gene1700063K16Rik, LOC665120, Usp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011B14.bB6Ng01-011B14.g
ACCDH846580DH846581
length9531,080
definitionDH846580|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B14, 5' end.DH846581|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,446,620 - 76,447,572)(76,566,034 - 76,567,124)
sequence
gaattctcactctgccaaccattctgtgtgtttgcattcaattgctatat
attggtcaatttttttttctctttggctatttaaaatgtaatcttaagac
ctttgatttttattattagcttttagttttttcttaaacagatttagaaa
tgtcctctattgggcaaatgggcagacaattcttatagacgggtctcatt
tggcctcccccaccaagcagttttcttagttgttgggatgctttgtaaca
aggacacatctggtatgtttggtggtagattccactcttttctattctct
tggtctagttactttacatgcatagctttgcctagcttctaggtccctga
ttgctagagcttgttatagcctgtgcggggctcctgtgagactcctgaga
cagctgtgagtctaggcatttccacagaacagtggtgcaaggctatttac
tccagtccacttctggagtagactatgatgagtaaatccagtctcttcat
ttctcattcccaggcagaacctattttcccctgatatctgcactaaaatt
aaacactggagaaacaatttgcaaacctaaaatccataggacaattagat
ttatttgaacctagccttcttctttttcttctagaaagtacttggagtta
tatgatgtagatacagaaatccataataaacaatttttattaaaagtatc
aaaggtgttaatcattttggaaatgccttggcatcctggtaacatgtata
taccaggcactaggcatatagggaactgctctttttccggaacttgctgg
aaatacagtttcaaaggagatagatgtttcattttcaaagcctttgaagt
ggtagtcagacagaagacttcacaaagggaagggggggggggtcctgagg
gtttttggaacattgatgagcaagtcgttttagggtgagtttgtcagagg
aga
gaattctttagagggggtgataatgacacttgatgaaagggcctctgcca
aaatcaaagcaaccaggaaaactgcttttcttgaaaatggcccagaaatg
agttaaaggccagtccccatggagaggagagtaagcagttttccacttcc
agactttgcatatctgagctccccacacaacaaggggttgggagtggggg
ctacagccggcttttctcataccttgaggtatgagactctctaatcccag
aacttcagtatagaggagaattttgaaaagtcagaagttgtgttcagaac
aatcggcagtgctttgtattggaaagtgatgcggttcccagtgtttgtaa
ttgcccatagagactcccccacctggcgtccaaagagaccacccaccaga
ctctaaagcagatctcagacctcaaacttcaagtgatttaaaactatcct
gaaggattagggatgcaaaggtcaacagtgtctcctccttaggtcaggtt
acaaaggtcagggtgcccagaactcagaagggtcagagtttcctgccaat
gcgtccgcccggtgaccagaagcgtgatactggaggaaacacgtggtccc
tgcagtagagccaaatgataaataaacttatccgacagcgtgaaggcaac
agcgactggaaactgaggaaacaggaaacatttggaaagagaattctaga
gatttgtcttagtaagaatctcctgaatttcaggggaagaaagaaaatat
gcttttccccaagtgtgaaggtgttacgttttttctgtttgttacagagg
atctagcccccaggtgtccttttagttctgtgctgaggttaaatttcttt
ctgaagttgggatctgaaactgaagacctgaaaacccaagtgcctatgat
tttcttagctttgttctccaactaacacagaaactgcaggaagcatgagt
tggcttaggcattgtccttactatggctaaatgattgaaatagattatct
cagttttgactctttaaatcgatgaatagatggtttagggttgacctgtt
gcttggcttcacgtttttgttcaggcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76446620_76447572
seq2: B6Ng01-011B14.b_46_998

seq1  GAATTCTCACTCTGCCAACCATTCTGTGTGTGTGCATTCAATTGCTATAT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCTCACTCTGCCAACCATTCTGTGTGTTTGCATTCAATTGCTATAT  50

seq1  ATTGGTCAATTTTTTTTTCTCTTTGGCTATTTAAAATGTAATCTTAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCAATTTTTTTTTCTCTTTGGCTATTTAAAATGTAATCTTAAGAC  100

seq1  CTTTGATTTTTATTATTAGCTTTTAGTTTTTTCTTAAACAGATTTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTTTATTATTAGCTTTTAGTTTTTTCTTAAACAGATTTAGAAA  150

seq1  TGTCCTCTATTGGGCAAATGGGCAGACAATTCTTATAGACGGGTCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTATTGGGCAAATGGGCAGACAATTCTTATAGACGGGTCTCATT  200

seq1  TGGCCTCCCCCACCAAGCAGTTTTCTTAGTTGTTGGGATGCTTTGTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCCCCACCAAGCAGTTTTCTTAGTTGTTGGGATGCTTTGTAACA  250

seq1  AGGACACATCTGGTATGTTTGGTGGTAGATTCCACTCTTTTCTATTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACATCTGGTATGTTTGGTGGTAGATTCCACTCTTTTCTATTCTCT  300

seq1  TGGTCTAGTTACTTTACATGCATAGCTTTGCCTAGCTTCTAGGTCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAGTTACTTTACATGCATAGCTTTGCCTAGCTTCTAGGTCCCTGA  350

seq1  TTGCTAGAGCTTGTTATAGCCTGTGCGGGGCTCCTGTGAGACTCCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGAGCTTGTTATAGCCTGTGCGGGGCTCCTGTGAGACTCCTGAGA  400

seq1  CAGCTGTGAGTCTAGGCATTTCCACAGAACAGTGGTGCAAGGCTATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGAGTCTAGGCATTTCCACAGAACAGTGGTGCAAGGCTATTTAC  450

seq1  TCCAGTCCACTTCTGGAGTAGACTATGATGAGTAAATCCAGTCTCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCACTTCTGGAGTAGACTATGATGAGTAAATCCAGTCTCTTCAT  500

seq1  TTCTCATTCCCAGGCAGAACCTATTTTCCCCTGATATCTGCACTAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCCCAGGCAGAACCTATTTTCCCCTGATATCTGCACTAAAATT  550

seq1  AAACACTGGAGAAACAATTTGCAAACCTAAAATCCATAGGACAATTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGGAGAAACAATTTGCAAACCTAAAATCCATAGGACAATTAGAT  600

seq1  TTATTTGAACCTAGCCTTCTTCTTTTTCTTCTAGAAAGTACTTGGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAACCTAGCCTTCTTCTTTTTCTTCTAGAAAGTACTTGGAGTTA  650

seq1  TATGATGTAGATACAGAAATCCATAATAAACAATTTTTATTAAAAGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTAGATACAGAAATCCATAATAAACAATTTTTATTAAAAGTATC  700

seq1  AAAGGTGTTAATCATTTTGGAAATGCCTTGGCATCCTGGTAACATGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTTAATCATTTTGGAAATGCCTTGGCATCCTGGTAACATGTATA  750

seq1  TACCAGGCACTAGGCATATAGGGAACTGCTCTTTTTCCGGAACTTGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCACTAGGCATATAGGGAACTGCTCTTTTTCCGGAACTTGCTGG  800

seq1  AAATACAGTTTCAAAGGAGATAGATGTTTCATTTTCAAAGCCTTTGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTTTCAAAGGAGATAGATGTTTCATTTTCAAAGCCTTTGAAGT  850

seq1  GGTAGTCAGACAGAAGACTTCACAAAGGGAA-GGGGGGGGGGTCCTGAGG  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTAGTCAGACAGAAGACTTCACAAAGGGAAGGGGGGGGGGGTCCTGAGG  900

seq1  GTTTTTGGAACAGTGATGAGCAAGTCGTTTCTAGGGTGAGTCTAGCTGAG  949
      |||||||||||| ||||||||||||||||| |||||||||| |  | |||
seq2  GTTTTTGGAACATTGATGAGCAAGTCGTTT-TAGGGTGAGTTTGTCAGAG  949

seq1  GAGA  953
      ||||
seq2  GAGA  953

seq1: chr16_76566034_76567124
seq2: B6Ng01-011B14.g_67_1146 (reverse)

seq1  TACTGCTGGAACAAAAAACGTGAAGCAAAGCAAACAGGTTCAACCTTAAA  50
      ||||||  |||| ||||||||||||| |||| |||||| |||||| | ||
seq2  TACTGCCTGAAC-AAAAACGTGAAGCCAAGC-AACAGG-TCAACCCT-AA  46

seq1  ACCATCTATTCATCGAATTTTGAAAGGAGTCAAAACTTGAGATAATCTAT  100
      |||||||||||||||| ||    || |||||||||| |||||||||||||
seq2  ACCATCTATTCATCGATTT----AAAGAGTCAAAAC-TGAGATAATCTAT  91

seq1  TTTCCAATCATTTTAGCCATAGTTAAGGACAATGCCTTAAGCCAACTCAT  150
      ||  |||||| ||||||||||| ||||||||||||| |||||||||||||
seq2  TT--CAATCA-TTTAGCCATAG-TAAGGACAATGCC-TAAGCCAACTCAT  136

seq1  GCTTCCTTGCAGTTTCTGTGTTAGTTGGAGAACAAAGCTAAGAAAATCAT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCC-TGCAGTTTCTGTGTTAGTTGGAGAACAAAGCTAAGAAAATCAT  185

seq1  AGGCACTTGGGTTTTCAGGTCTTCAGTTTTCAGAT-CCAACTTCAGAA--  247
      |||||||||||||||||||||||||| |||||||| ||||||||||||  
seq2  AGGCACTTGGGTTTTCAGGTCTTCAG-TTTCAGATCCCAACTTCAGAAAG  234

seq1  GAATTTAACCTCAGCACAGAACT-AAAGGACACCTGGGGGCTAGATCCTC  296
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATTTAACCTCAGCACAGAACTAAAAGGACACCTGGGGGCTAGATCCTC  284

seq1  TGTAACAAACAG-AAAAACGTAACACCTTCACACTTGGGGAAAAGCATAT  345
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAACAGAAAAAACGTAACACCTTCACACTTGGGGAAAAGCATAT  334

seq1  TTTCTTTCTTCCCCTGAAATTCAGGAGATTCTTACTAAGACAAATCTCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTCCCCTGAAATTCAGGAGATTCTTACTAAGACAAATCTCTA  384

seq1  GAATTCTCTTTCCAAATGTTTCCTGTTTCCTCAGTTTCCAGTCGCTGTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCCAAATGTTTCCTGTTTCCTCAGTTTCCAGTCGCTGTTG  434

seq1  CCTTCACGCTGTCGGATAAGTTTATTTATCATTTGGCTCTACTGCAGGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACGCTGTCGGATAAGTTTATTTATCATTTGGCTCTACTGCAGGGA  484

seq1  CCACGTGTTTCCTCCAGTATCACGCTTCTGGTCACCGGGCGGACGCATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGTTTCCTCCAGTATCACGCTTCTGGTCACCGGGCGGACGCATTG  534

seq1  GCAGGAAACTCTGACCCTTCTGAGTTCTGGGCACCCTGACCTTTGTAACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAACTCTGACCCTTCTGAGTTCTGGGCACCCTGACCTTTGTAACC  584

seq1  TGACCTAAGGAGGAGACACTGTTGACCTTTGCATCCCTAATCCTTCAGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAGGAGGAGACACTGTTGACCTTTGCATCCCTAATCCTTCAGGA  634

seq1  TAGTTTTAAATCACTTGAAGTTTGAGGTCTGAGATCTGCTTTAGAGTCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAAATCACTTGAAGTTTGAGGTCTGAGATCTGCTTTAGAGTCTG  684

seq1  GTGGGTGGTCTCTTTGGACGCCAGGTGGGGGAGTCTCTATGGGCAATTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGTCTCTTTGGACGCCAGGTGGGGGAGTCTCTATGGGCAATTAC  734

seq1  AAACACTGGGAACCGCATCACTTTCCAATACAAAGCACTGCCGATTGTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGGGAACCGCATCACTTTCCAATACAAAGCACTGCCGATTGTTC  784

seq1  TGAACACAACTTCTGACTTTTCAAAATTCTCCTCTATACTGAAGTTCTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAACTTCTGACTTTTCAAAATTCTCCTCTATACTGAAGTTCTGG  834

seq1  GATTAGAGAGTCTCATACCTCAAGGTATGAGAAAAGCCGGCTGTAGCCCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGAGTCTCATACCTCAAGGTATGAGAAAAGCCGGCTGTAGCCCC  884

seq1  CACTCCCAACCCCTTGTTGTGTGGGGAGCTCAGATATGCAAAGTCTGGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCAACCCCTTGTTGTGTGGGGAGCTCAGATATGCAAAGTCTGGAA  934

seq1  GTGGAAAACTGCTTACTCTCCTCTCCATGGGGACTGGCCTTTAACTCATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAACTGCTTACTCTCCTCTCCATGGGGACTGGCCTTTAACTCATT  984

seq1  TCTGGGCCATTTTCAAGAAAAGCAGTTTTCCTGGTTGCTTTGATTTTGGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCATTTTCAAGAAAAGCAGTTTTCCTGGTTGCTTTGATTTTGGC  1034

seq1  AGAGGCCCTTTCATCAAGTGTCATTATCACCCCCTCTAAAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCTTTCATCAAGTGTCATTATCACCCCCTCTAAAGAATTC  1080