BAC Information

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BAC

Clone NameB6Ng01-011E23
Chromosome16 (Build37)
Map Location 53,402,861 - 53,540,345
singlet/doubletdoublet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E23.bB6Ng01-011E23.g
ACCDH846729DH846730
length1,0671,099
definitionDH846729|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E23, 5' end.DH846730|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,539,282 - 53,540,345)(53,402,861 - 53,403,966)
sequence
gaattctcaaatagcatgaacaataatcatattcagtttatgtgatggct
ttttttaaaaatgaaactgtttttatacagttttaaaaaaaattatgcta
aaacaatactctatatgcatactaaaattactatttcactaatttatctt
tgctgaaaaaaaacatgtgaacttgtttttagactaccccatattccagc
agaacccatttaactgtggtcattggctcaaaggtacagagctcagtgct
tatggattaaaagtcaaccagctctggagtaaaacagcctttccagaaga
acgtaattcaggaacatgatcactactaaccatagagagtgcttttcctg
ctcaggcaaacagtctattcccaccatagaaaatgccttcgatggtctca
tcccaattatagctgctcgtgaagtacacattcctcagtttagaatgaac
ctttctcacaggctctcacctggcagtctcaaagtcactgtcaactcctt
tcatcctttgtctatatttagttagatgcagcaaacaatggcccttgcat
ttctgctttccaaattcaccagattctgtttcttttttctctctctattt
cttctgttttcattcttctcttcatagaatacaggagtgccaccttcagt
ttctgtttttgtttgttttgttttatgtatacttaaaagaataaccataa
agtaatacatttttcaaaaaaaattcaaaaaaacatttttatcaaccagc
atgtcttttctatttctgtatagaagggaaaatggagaaagcagaacaat
ttaaaaagaaactatttcattctaaagaatctctttgaaaaaaataactg
tgaactctgagctttaaacatttggagcattggacaaagtgacttaaaaa
tttacattaaaaaaaggaaaacttaagaagtacagagtttgttctaataa
actttatcaacagaaaccaaaaagactaaaaaataaaaaaaaaatttgag
catcctatgtgaagtacatttcatcaattgcggtgattattaaattactt
ttaataatgtaaggtct
gaattctgtgtactacattttaaaatgtaatgctctgttggcagtgactt
gagtgtttaagtatttaggtcttgtatgttagtcagcacttacgcagtag
ttacacattccaggcatcccaccttttagtagaagtgcatgataataata
aaataaaaaaaatagtatcttactgttaaaatgggcacttgcatttttta
aggcacttgaagagaggcaaaatcattctaaattagatgaacttccagtt
aagtccactttcgtgtttgctttttcattcttagtgttattttatgattc
acatatgcgtgattatataataaagtgacttcaaaatgtaaagcgcacaa
agatggcaggctactagacttagtgaatacataatagaaaatataaaaac
tgaaggcattgcggtgcatttttctggtacaaaactcaattttctcctga
gatgtatgagggctcatggtggagacatataaaatgcttccaaacttatg
tattgaattttattcttttcagcacagtagagaggctttctagtgagaaa
atgtgaaagttaataatctcagtttcaatacaccctgtgggtttccaatt
ctctgttactttagccaacttgatttctaaacaagaagaaaattgactct
acattggttctacggggagaaaagcaaatgcatatgagatatgatgtatg
atatgatgtatggccacagactgagctccccagtctttttgtattatttt
cttagaaataagtaattgaaaaattctcaaagtatatccagggattagtg
gactttattctttttgttgttcttaattagtattctacttcttacataga
gtcaatgtgtatttctgaaattttcttagggacttttgggtatggatctt
ggcttatgtaagtaaccagttgcatgtaaaatgtttgtacacttccaaat
tttacttggcattgatctgtttttcagagtgaggcatggcacacacctct
tttgcttatttttttccaagtacataattttctaccccttcccataggat
tttgccaaggctctcatacctacctttagactgccaaaattgctcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53539282_53540345
seq2: B6Ng01-011E23.b_42_1108 (reverse)

seq1  AGACTTTACATTATTTAAAGTAATTTAATAATCACCGCAATTGATGAAAT  50
      |||| |||||||||| ||||||||||||||||||||||||||||||||| 
seq2  AGACCTTACATTATTAAAAGTAATTTAATAATCACCGCAATTGATGAAA-  49

seq1  TGTACTTCACATAGGATGCTC-AATTTTTTTTTTATTTTTTAGTCTTTTT  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTACTTCACATAGGATGCTCAAATTTTTTTTTTATTTTTTAGTCTTTTT  99

seq1  GGTTTCTGTTTGATAAAGTTTATTAGTACAAACTCTGTACTTCTT-AGTT  148
      |||||||| ||||||||||||||||| |||||||||||||||||| ||||
seq2  GGTTTCTG-TTGATAAAGTTTATTAGAACAAACTCTGTACTTCTTAAGTT  148

seq1  TTCCTTTTTTTAATGTAAATTTTTAAGTCACTTTGTCCAATGCT-CAAAT  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCCTTTTTTTAATGTAAATTTTTAAGTCACTTTGTCCAATGCTCCAAAT  198

seq1  GTTTAAAGCTCAGAGTTCACAGTTATTTTTTTCAAAGAGATTCTTTAGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGCTCAGAGTTCACAGTTATTTTTTTCAAAGAGATTCTTTAGAA  248

seq1  TG-AATAGTTTCTTTTTAAATTGTTCTGCTTTCTCCATTTTCCCTTCTAT  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGTTTCTTTTTAAATTGTTCTGCTTTCTCCATTTTCCCTTCTAT  298

seq1  ACAGAAATAGAAAAGACATGCTGGTTGATAAAAATGTTTTTTTGAATTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATAGAAAAGACATGCTGGTTGATAAAAATGTTTTTTTGAATTTT  348

seq1  TTTTG-AAAATGTATTACTTTATGGTTATTCTTTTAAGTATACATAAAAC  395
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAATGTATTACTTTATGGTTATTCTTTTAAGTATACATAAAAC  398

seq1  AAAACAAACAAAAACAGAAACTGAAGGTGGCACTCCTGTATTCTATGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAAAACAGAAACTGAAGGTGGCACTCCTGTATTCTATGAAG  448

seq1  AGAAGAATGAAAACAGAAGAAATAGAGAGAGAAAAAAGAAACAGAATCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGAAAACAGAAGAAATAGAGAGAGAAAAAAGAAACAGAATCTG  498

seq1  GTGAATTTGGAAAGCAGAAATGCAAGGGCCATTGTTTGCTGCATCTAACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTGGAAAGCAGAAATGCAAGGGCCATTGTTTGCTGCATCTAACT  548

seq1  AAATATAGACAAAGGATGAAAGGAGTTGACAGTGACTTTGAGACTGCCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGACAAAGGATGAAAGGAGTTGACAGTGACTTTGAGACTGCCAG  598

seq1  GTGAGAGCCTGTGAGAAAGGTTCATTCTAAACTGAGGAATGTGTACTTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCCTGTGAGAAAGGTTCATTCTAAACTGAGGAATGTGTACTTCA  648

seq1  CGAGCAGCTATAATTGGGATGAGACCATCGAAGGCATTTTCTATGGTGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAGCTATAATTGGGATGAGACCATCGAAGGCATTTTCTATGGTGGG  698

seq1  AATAGACTGTTTGCCTGAGCAGGAAAAGCACTCTCTATGGTTAGTAGTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTGTTTGCCTGAGCAGGAAAAGCACTCTCTATGGTTAGTAGTGA  748

seq1  TCATGTTCCTGAATTACGTTCTTCTGGAAAGGCTGTTTTACTCCAGAGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCTGAATTACGTTCTTCTGGAAAGGCTGTTTTACTCCAGAGCT  798

seq1  GGTTGACTTTTAATCCATAAGCACTGAGCTCTGTACCTTTGAGCCAATGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACTTTTAATCCATAAGCACTGAGCTCTGTACCTTTGAGCCAATGA  848

seq1  CCACAGTTAAATGGGTTCTGCTGGAATATGGGGTAGTCTAAAAACAAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTAAATGGGTTCTGCTGGAATATGGGGTAGTCTAAAAACAAGTT  898

seq1  CACATGTTTTTTTTCAGCAAAGATAAATTAGTGAAATAGTAATTTTAGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTTTTTTCAGCAAAGATAAATTAGTGAAATAGTAATTTTAGTA  948

seq1  TGCATATAGAGTATTGTTTTAGCATAATTTTTTTTAAAACTGTATAAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAGAGTATTGTTTTAGCATAATTTTTTTTAAAACTGTATAAAAA  998

seq1  CAGTTTCATTTTTAAAAAAAGCCATCACATAAACTGAATATGATTATTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCATTTTTAAAAAAAGCCATCACATAAACTGAATATGATTATTGT  1048

seq1  TCATGCTATTTGAGAATTC  1064
      |||||||||||||||||||
seq2  TCATGCTATTTGAGAATTC  1067

seq1: chr16_53402861_53403966
seq2: B6Ng01-011E23.g_65_1163

seq1  GAATTCTGTGTACTACATTTTAAAATGTAATGCTCTGTTGGCAGTGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTACTACATTTTAAAATGTAATGCTCTGTTGGCAGTGACTT  50

seq1  GAGTGTTTAAGTATTTAGGTCTTGTATGTTAGTCAGCACTTACGCAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTAAGTATTTAGGTCTTGTATGTTAGTCAGCACTTACGCAGTAG  100

seq1  TTACACATTCCAGGCATCCCACCTTTTAGTAGAAGTGCATGATAATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTCCAGGCATCCCACCTTTTAGTAGAAGTGCATGATAATAATA  150

seq1  AAATAAAAAAAATAGTATCTTACTGTTAAAATGGGCACTTGCATTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAAATAGTATCTTACTGTTAAAATGGGCACTTGCATTTTTTA  200

seq1  AGGCACTTGAAGAGAGGCAAAATCATTCTAAATTAGATGAACTTCCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTGAAGAGAGGCAAAATCATTCTAAATTAGATGAACTTCCAGTT  250

seq1  AAGTCCACTTTCGTGTTTGCTTTTTCATTCTTAGTGTTATTTTATGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCACTTTCGTGTTTGCTTTTTCATTCTTAGTGTTATTTTATGATTC  300

seq1  ACATATGCGTGATTATATAATAAAGTGACTTCAAAATGTAAAGCGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCGTGATTATATAATAAAGTGACTTCAAAATGTAAAGCGCACAA  350

seq1  AGATGGCAGGCTACTAGACTTAGTGAATACATAATAGAAAATATAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGGCTACTAGACTTAGTGAATACATAATAGAAAATATAAAAAC  400

seq1  TGAAGGCATTGCGGTGCATTTTTCTGGTACAAAACTCAATTTTCTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCATTGCGGTGCATTTTTCTGGTACAAAACTCAATTTTCTCCTGA  450

seq1  GATGTATGAGGGCTCATGGTGGAGACATATAAAATGCTTCCAAACTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATGAGGGCTCATGGTGGAGACATATAAAATGCTTCCAAACTTATG  500

seq1  TATTGAATTTTATTCTTTTCAGCACAGTAGAGAGGCTTTCTAGTGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTTTATTCTTTTCAGCACAGTAGAGAGGCTTTCTAGTGAGAAA  550

seq1  ATGTGAAAGTTAATAATCTCAGTTTCAATACACCCTGTGGGTTTCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAGTTAATAATCTCAGTTTCAATACACCCTGTGGGTTTCCAATT  600

seq1  CTCTGTTACTTTAGCCAACTTGATTTCTAAACAAGAAGAAAATTGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTACTTTAGCCAACTTGATTTCTAAACAAGAAGAAAATTGACTCT  650

seq1  ACATTGGTTCTACGGGGAGAAAAGCAAATGCATATGAGATATGATGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTTCTACGGGGAGAAAAGCAAATGCATATGAGATATGATGTATG  700

seq1  ATATGATGTATGGCCACAGACTGAGCTCCCCAGTCTTTTTGTATTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTATGGCCACAGACTGAGCTCCCCAGTCTTTTTGTATTATTTT  750

seq1  CTTAGAAATAAGTAATTGAAAAATTCTCAAAGTATATCCAGGGATTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATAAGTAATTGAAAAATTCTCAAAGTATATCCAGGGATTAGTG  800

seq1  GACTTTATTCTTTTTGTTGTTCTTAATTAGTATTCTACTTCTTACATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTCTTTTTGTTGTTCTTAATTAGTATTCTACTTCTTACATAGA  850

seq1  GTCAATGTGTATTTCTGAAATTTTCTTAGGGACTTTTGGGTATGGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTGTATTTCTGAAATTTTCTTAGGGACTTTTGGGTATGGATCTT  900

seq1  GGCTTATGTTAAGTAACCAGTTGCATGTAAAATGTTTGTACACTTCCAAA  950
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  GGCTTATG-TAAGTAACCAGTTGCATGTAAAATGTTTGTACACTTCC-AA  948

seq1  ATTTTACTTGGCATTGATCTGTTTTTCAGAGTGAGGGCATGGCACACACC  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTACTTGGCATTGATCTGTTTTTCAGAGTGA-GGCATGGCACACACC  997

seq1  TC-TTTGCTTA-TTTTTTCCAAGTACATTA-TTTCTAACCCTTCCCCAAT  1047
      || |||||||| |||||||||||||||| | |||||| ||||||||  ||
seq2  TCTTTTGCTTATTTTTTTCCAAGTACATAATTTTCTACCCCTTCCC--AT  1045

seq1  AAGGATTTGCACAAGTGCTCTCATAACTACC-TTAGACCTGCACAAAAAT  1096
       |||||||   |||| ||||||||| ||||| ||||| |||| |||||  
seq2  -AGGATTTTGCCAAG-GCTCTCATACCTACCTTTAGA-CTGC-CAAAA--  1089

seq1  TTGCTCAGCT  1106
      ||||||||||
seq2  TTGCTCAGCT  1099