BAC Information

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BAC

Clone NameB6Ng01-011G24
Chromosome16 (Build37)16 (Build37)
Map Location 94,033,169 - 94,034,20494,393,866 - 94,394,517
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
Downstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011G24.bB6Ng01-011G24.g
ACCDH846823DH846824
length1,041652
definitionDH846823|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G24, 5' end.DH846824|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,033,169 - 94,034,204)(94,393,866 - 94,394,517)
sequence
gaattcctgggctcaggtgatctttctgctgcagcctcttgagtagttga
gtggtagatgaagactggcttgcagagaagtttgtacagaccactgtcac
catgtttgctattattggttggacttaactgagcgtaaatgtcccacctt
agtcacagcgcatgcatgctttcctgagcctacccctgtcactgcaggat
acccaagaatccttgaagtatcaccatcttcatcctggagagttccagaa
cactacagtagaatgtaatgtaaaactgtaatgaccactggagcctgtct
ctaaataagctctttcctagcggtcctcttaggcctccagaccaccagac
tctgggctccagcatcgatgtacttcacagatagcttcagaatcatgttt
gggttgttagttgtatccgccctccctcgtagggagtcaaagtcctttgc
tctggagaccttgataaaagaagtcagggcagaaggctggcaaagatggg
gaaaccagctgggaccactcagggcaggagcagaggcaattcacaatgtg
gaaatatcagaacaggagggctctgagctggcggatcagtcgggatgtct
aacgtagcagagaaccccatgttctctgtgaccacaggggcaaatgcatt
tctgttactgggttacattgctgctctgtgtctcacatcttcccatctga
gatctcgaccaatgaagcaaccatgccctgcaaaacatcgagagaggagt
gcactcacataacgtttcttggttagagagtaggcattcccccgacataa
gctccacgccctcaggtgtagcctgcctcacggccaactatggtcaatgg
gatggaaaagtatcattctttaacaagggaattatgggtctgaatgaatc
ctgatcccaaccttaaatgactacatgcaagcatctccaggtcgagtgat
aacctgcgggaactggagtcactgaaaagtaatggggctttgctgctggc
tgaaagcatgaggtaggaagtattcaggtcctgcaccacat
gaattcaaaataggtgagagagcgcagttaacgtgtacctttgctccacc
cactctcccactaggctcccgggacttccctcacagttggcttccatgag
tcccatctatcagagttcactggacaatctttggctccctgcagtgttgt
gggtaatttgaaaccgatgatcacacctgattcctttccatgttcccttt
ctgcctaggtgagtgcaagcaatggtgaaggttgggagaaagagcatttg
gtttatagtagttggttcttgtactgtgaaatgatgtacattttttctag
agcccttgcttgactttgtaagggaagcctgtgttgttgtatcaagttcc
aggtagcaaaaactgttgtgttataatgtggttagacattgatgtgtcta
tgtttgcaggtgtaaggtaaatgtatccttttaaagtagatcggttctgt
tgtgttacagtgtggctggatattgacctgtatatgtttaatggtttaaa
gtaaatgtgtccccttacacagagcatttcaaaactggacaaagtggcaa
atgcctgtaatgtcagcatttaggaggctgaggctggaggatcactgtga
gtttgaggtcagcctcgcctacataacaagatgtagcctttgtttttatt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94033169_94034204
seq2: B6Ng01-011G24.b_44_1084

seq1  GAATTCCTGGGCTCAGGTGATCTTTCTGCTGCAGCCTCTTGAGTAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCTCAGGTGATCTTTCTGCTGCAGCCTCTTGAGTAGTTGA  50

seq1  GTGGTAGATGAAGACTGGCTTGCAGAGAAGTTTGTACAGACCACTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGATGAAGACTGGCTTGCAGAGAAGTTTGTACAGACCACTGTCAC  100

seq1  CATGTTTGCTATTATTGGTTGGACTTAACTGAGCGTAAATGTCCCACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGCTATTATTGGTTGGACTTAACTGAGCGTAAATGTCCCACCTT  150

seq1  AGTCACAGCGCATGCATGCTTTCCTGAGCCTACCCCTGTCACTGCAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCGCATGCATGCTTTCCTGAGCCTACCCCTGTCACTGCAGGAT  200

seq1  ACCCAAGAATCCTTGAAGTATCACCATCTTCATCCTGGAGAGTTCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAATCCTTGAAGTATCACCATCTTCATCCTGGAGAGTTCCAGAA  250

seq1  CACTACAGTAGAATGTAATGTAAAACTGTAATGACCACTGGAGCCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGTAGAATGTAATGTAAAACTGTAATGACCACTGGAGCCTGTCT  300

seq1  CTAAATAAGCTCTTTCCTAGCGGTCCTCTTAGGCCTCCAGACCACCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAGCTCTTTCCTAGCGGTCCTCTTAGGCCTCCAGACCACCAGAC  350

seq1  TCTGGGCTCCAGCATCGATGTACTTCACAGATAGCTTCAGAATCATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTCCAGCATCGATGTACTTCACAGATAGCTTCAGAATCATGTTT  400

seq1  GGGTTGTTAGTTGTATCCGCCCTCCCTCGTAGGGAGTCAAAGTCCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTAGTTGTATCCGCCCTCCCTCGTAGGGAGTCAAAGTCCTTTGC  450

seq1  TCTGGAGACCTTGATAAAAGAAGTCAGGGCAGAAGGCTGGCAAAGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACCTTGATAAAAGAAGTCAGGGCAGAAGGCTGGCAAAGATGGG  500

seq1  GAAACCAGCTGGGACCACTCAGGGCAGGAGCAGAGGCAATTCACAATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGCTGGGACCACTCAGGGCAGGAGCAGAGGCAATTCACAATGTG  550

seq1  GAAATATCAGAACAGGAGGGCTCTGAGCTGGCGGATCAGTCGGGATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCAGAACAGGAGGGCTCTGAGCTGGCGGATCAGTCGGGATGTCT  600

seq1  AACGTAGCAGAGAACCCCATGTTCTCTGTGACCACAGGGGCAAATGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAGCAGAGAACCCCATGTTCTCTGTGACCACAGGGGCAAATGCATT  650

seq1  TCTGTTACTGGGTTACATTGCTGCTCTGTGTCTCACATCTTCCCATCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTGGGTTACATTGCTGCTCTGTGTCTCACATCTTCCCATCTGA  700

seq1  GATCTCAACCAATGAAGCAACCATGCCCTGCAAAACATCGAGAGAGGAGT  750
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCGACCAATGAAGCAACCATGCCCTGCAAAACATCGAGAGAGGAGT  750

seq1  GCACTCACATAACGTTTCTTGGTTAGAGAGTAGGCATTCCCCCGACGTAA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCACTCACATAACGTTTCTTGGTTAGAGAGTAGGCATTCCCCCGACATAA  800

seq1  GCTCCACGCCCTCAGGTGTAGCCTGCCTCACGGCCAACCATGGTCAATGG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTCCACGCCCTCAGGTGTAGCCTGCCTCACGGCCAACTATGGTCAATGG  850

seq1  GATGGAAATGTATCATTCTTTAAC-AGGGAATTATGGGTATGAATG-ATC  898
      |||||||| ||||||||||||||| |||||||||||||| |||||| |||
seq2  GATGGAAAAGTATCATTCTTTAACAAGGGAATTATGGGTCTGAATGAATC  900

seq1  ATGATACCAACCTT-AATGACTACAGGCAAGGCATCTCCA-GTCGTGTGA  946
       |||| |||||||| |||||||||| |||| ||||||||| |||| ||||
seq2  CTGATCCCAACCTTAAATGACTACATGCAA-GCATCTCCAGGTCGAGTGA  949

seq1  TAACCTGGGGAAACT-GAGGCACTGAGTAGCAATGTGGCTTGCCTGCTGG  995
      ||||||| || |||| ||| ||||||  || |||| |||||  |||||||
seq2  TAACCTGCGGGAACTGGAGTCACTGAAAAGTAATGGGGCTTTGCTGCTGG  999

seq1  CTGTAAAGCATGAGGTTGG-AGTA-TCAGCGCCTGCACCACAT  1036
      ||| |||||||||||| || |||| ||||  ||||||||||||
seq2  CTG-AAAGCATGAGGTAGGAAGTATTCAGGTCCTGCACCACAT  1041

seq1: chr16_94393866_94394517
seq2: B6Ng01-011G24.g_66_717 (reverse)

seq1  AAAAAAAAAAAAAAGGCAACATCTTGCTATGTAGGCCAGGCTGGCCTCAA  50
      |||| ||||| |||||| |||||||| ||||||||| |||||| ||||||
seq2  AAAATAAAAACAAAGGCTACATCTTGTTATGTAGGCGAGGCTGACCTCAA  50

seq1  ACTCACAGTGATCCTCCAGCCTCAGCCTCCTAAATGCTGACATTACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGTGATCCTCCAGCCTCAGCCTCCTAAATGCTGACATTACAGGC  100

seq1  ATTTGCCACTTTGTCCAGTTTTGAAATGCTCTGTGTAAGGGGACACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCACTTTGTCCAGTTTTGAAATGCTCTGTGTAAGGGGACACATTT  150

seq1  ACTTTAAACCATTAAACATATACAGGTCAATATCCAGCCACACTGTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAACCATTAAACATATACAGGTCAATATCCAGCCACACTGTAACA  200

seq1  CAACAGAACCGATCTACTTTAAAAGGATACATTTACCTTACACCTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAACCGATCTACTTTAAAAGGATACATTTACCTTACACCTGCAAA  250

seq1  CATAGACACATCAATGTCTAACCACATTATAACACAACAGTCTTTGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATAGACACATCAATGTCTAACCACATTATAACACAACAGTTTTTGCTAC  300

seq1  CTGGAACTTGATACAACAACACAGGCTTCCCTTACAAAGTCAAGCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTTGATACAACAACACAGGCTTCCCTTACAAAGTCAAGCAAGGG  350

seq1  CTCTAGAAAAAATGTACATCATTTCACAGTACAAGAACCAACTACTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAAAAATGTACATCATTTCACAGTACAAGAACCAACTACTATAA  400

seq1  ACCAAATGCTCTTTCTCCCAACCTTCACCATTGCTTGCACTCACCTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGCTCTTTCTCCCAACCTTCACCATTGCTTGCACTCACCTAGGC  450

seq1  AGAAAGGGAACATGGAAAGGAATCAGGTGTGATCATCGGTTTCAAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGAACATGGAAAGGAATCAGGTGTGATCATCGGTTTCAAATTAC  500

seq1  CCACAACACTGCAGGGAGCCAAAGATTGTCCAGTGAACTCTGATAGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACACTGCAGGGAGCCAAAGATTGTCCAGTGAACTCTGATAGATGG  550

seq1  GACTCATGGAAGCCAACTGTGAGGGAAGTCCCGGGAGCCTAGTGGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATGGAAGCCAACTGTGAGGGAAGTCCCGGGAGCCTAGTGGGAGAG  600

seq1  TGGGTGGAGCAAAGGTACACGTTAACTGCGCTCTCTCACCTATTTTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGAGCAAAGGTACACGTTAACTGCGCTCTCTCACCTATTTTGAAT  650

seq1  TC  652
      ||
seq2  TC  652