BAC Information

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BAC

Clone NameB6Ng01-012C03
Chromosome6 (Build37)16 (Build37)
Map Location 18,835,442 - 18,835,96875,559,933 - 75,561,000
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012C03.bB6Ng01-012C03.g
ACCDH847306DH847307
length9611,073
definitionDH847306|Mus musculus domesticus DNA, BAC clone: B6Ng01-012C03, 5' end.DH847307|Mus musculus domesticus DNA, BAC clone: B6Ng01-012C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(75,559,933 - 75,561,000)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaaggttttatcata
cagatctttcacctccttagttagagtcacgccaagatattttatatatt
tgtgactattg
gaattctctttgggaaatatagaactgcctctggaatacttttaagtctt
ctgcttttaaactatttacttgaccatcttgtaattatttatttattact
tcacaattttatctatatagataatatgaatttggaggtttggatgaaat
gggcccttgtagagctgtagggaaggccaatattaggagctgtggccttg
ttggaaggagtgtgttcctgggagtgaactttgaagtctcaaatgctcac
atcgggcccagtgtcactctctctttctgctgcctgctgtccagatttga
aactctcagctacttctccagcaccatgcctgcctgcatgccactacgcg
tccctccatgataataatgcactacatctctgaatggtaaacaagcccca
ctcaaaggtttgagtgggttgtttgtttgtttgtttgtttgtttgtttgt
aagagttactgtggtcatggtgtctcctcacagcaacaaaattccaacca
aggcaatataaatagtgcactttgattatacccccattgtactctttatt
tgctcctacttcatcccatcttttaggagttatttatttttctctctatt
ttcactggtaggttttcattttcaaaagctgccaacataacaaccctttt
tatgttttactgatatagaaggcatgaactatacaggattcttgatgact
tgctgagagaaaatccaaagctagctagctacaaggtacacctcttcact
tgtacctaaaacttcctgttaaaagacaggaaaaaaaacagttttccagt
gcacaaagaaatgtagacattctgcctctagacataggaagacaggaagg
gaaaattcctttagacaaaaaaatgatacagaatgtatacagtgaatctg
ccattactctgttgataaattttccccaaactgtaatgtagtagcagata
atataaaacacactttagcatccaacttaaaatactacccttgatggtct
atacttcaacttcaaaaggaattgtataaacacaacttctctacacaggt
cttggccagagtctttgtaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-012C03.b_44_571 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr16_75559933_75561000
seq2: B6Ng01-012C03.g_66_1138

seq1  GAATTCTCTTTGGGAAATATAGAACTGCCTCTGGAATACTTTTAAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGGAAATATAGAACTGCCTCTGGAATACTTTTAAGTCTT  50

seq1  CTGCTTTTAAACTATTTACTTGACCATCTTGTAATTATTTATTTATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTAAACTATTTACTTGACCATCTTGTAATTATTTATTTATTACT  100

seq1  TCACAATTTTATCTATATAGATAATATGAATTTGGAGGTTTGGATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTTTATCTATATAGATAATATGAATTTGGAGGTTTGGATGAAAT  150

seq1  GGGCCCTTGTAGAGCTGTAGGGAAGGCCAATATTAGGAGCTGTGGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTTGTAGAGCTGTAGGGAAGGCCAATATTAGGAGCTGTGGCCTTG  200

seq1  TTGGAAGGAGTGTGTTCCTGGGAGTGAACTTTGAAGTCTCAAATGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGAGTGTGTTCCTGGGAGTGAACTTTGAAGTCTCAAATGCTCAC  250

seq1  ATCGGGCCCAGTGTCACTCTCTCTTTCTGCTGCCTGCTGTCCAGATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGCCCAGTGTCACTCTCTCTTTCTGCTGCCTGCTGTCCAGATTTGA  300

seq1  AACTCTCAGCTACTTCTCCAGCACCATGCCTGCCTGCATGCCACTACGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGCTACTTCTCCAGCACCATGCCTGCCTGCATGCCACTACGCG  350

seq1  TCCCTCCATGATAATAATGCACTACATCTCTGAATGGTAAACAAGCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCATGATAATAATGCACTACATCTCTGAATGGTAAACAAGCCCCA  400

seq1  CTCAAAGGTTTGAGTGGGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGTTTGAGTGGGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGT  450

seq1  AAGAGTTACTGTGGTCATGGTGTCTCCTCACAGCAACAAAATTCCAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTACTGTGGTCATGGTGTCTCCTCACAGCAACAAAATTCCAACCA  500

seq1  AGGCAATATAAATAGTGCACTTTGATTATACCCCCATTGTACTCTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATATAAATAGTGCACTTTGATTATACCCCCATTGTACTCTTTATT  550

seq1  TGCTCCTACTTCATCCCATCTTTTAGGAGTTATTTATTTTTCTCTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTACTTCATCCCATCTTTTAGGAGTTATTTATTTTTCTCTCTATT  600

seq1  TTCACTGGTAGGTTTTCATTTTCAAAAGCTGCCAACATAACAACCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGTAGGTTTTCATTTTCAAAAGCTGCCAACATAACAACCCTTTT  650

seq1  TATGTTTTACTGATATAGAAGGCATGAACTATACAGGATTCTTGATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTACTGATATAGAAGGCATGAACTATACAGGATTCTTGATGACT  700

seq1  TGCTGAGAGAAAATCCAAAGCTAGCTAGCTACAAGGTACACCTCTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAGAAAATCCAAAGCTAGCTAGCTACAAGGTACACCTCTTCACT  750

seq1  TGTACCTAAAACTTCCTGTTAAAAGACAGGAAAAAAAACAG-TTTCCAGT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTACCTAAAACTTCCTGTTAAAAGACAGGAAAAAAAACAGTTTTCCAGT  800

seq1  GCACAAAG-AATGTAGACATTCTGCCTCTAGACATAGGAAGACAGGAA-G  847
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  GCACAAAGAAATGTAGACATTCTGCCTCTAGACATAGGAAGACAGGAAGG  850

seq1  GAAAATTCC-TTAGACAAAAAAATGATACAGAATGTATACAGTGAATCTG  896
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCCTTTAGACAAAAAAATGATACAGAATGTATACAGTGAATCTG  900

seq1  CCATTACTCTGTTGATAAATTTTCCCCAAACTGTAATGTAGTAGCAGATT  946
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCATTACTCTGTTGATAAATTTTCCCCAAACTGTAATGTAGTAGCAGA-T  949

seq1  AATATAAAACACACTTTAGCATCCAACCTAAAATACTACCC-TGATGGTC  995
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AATATAAAACACACTTTAGCATCCAACTTAAAATACTACCCTTGATGGTC  999

seq1  T-TAC-TCAACTTCAAAAGGAATTGTATAAACACAACTTCTCTCACCAAG  1043
      | ||| |||||||||||||||||||||||||||||||||||||   || |
seq2  TATACTTCAACTTCAAAAGGAATTGTATAAACACAACTTCTCTACACAGG  1049

seq1  TCTTGGGCAGGAGTCTTTGTAAAGA  1068
      |||||| || |||||||||||||||
seq2  TCTTGGCCA-GAGTCTTTGTAAAGA  1073