BAC Information

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BAC

Clone NameB6Ng01-012E05
Chromosome16 (Build37)
Map Location 41,236,752 - 41,360,651
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012E05.bB6Ng01-012E05.g
ACCDH847404DH847405
length1,1221,138
definitionDH847404|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E05, 5' end.DH847405|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,236,752 - 41,237,873)(41,359,493 - 41,360,651)
sequence
gaattctacactgattctgcattaaagtattaacaaactccggtttattg
ttctcattttaaataccatctgaagtaaaaggagggagaaggataacagg
agagagaaggacagtgaggggaagagagaggatgacagatgatgcatttt
caaatatacacacacatacatacctgggtcataaattcaagttctctaca
tctttaaaattctagaagatgtgaaaaaaaaaacaaagaattactgggaa
attgttggatctttataatatcacatgctcagaatatattaacacagtga
caagaaagaagaaaagatatagttatattattattattatttattattat
tattattattattagtcatcatgaatatagaagggccgaattcacagact
ggagtgaccaatattgccgagttttgctttcttttctctgtgatcctggt
accctccaacccatttcctttgatttgctgagagaccttaacaaggagac
agcctgcaccctatctctttacgtttgctgtgctctatgttgcccaaata
ttgaaaagaataaatctaaggtgtatgctttgtgagtgatctgcaggagc
agggtgagttctctagcctactataattgcacagtgtttacacttctctg
tgtttcttatgctaaaaaccagcttcaaaagtgttagaggctcttctctt
ggatttactatagtaccaatcactctgcgtgaactttggattgaaatttc
ttaggaaattaagattactttattgtataggtaatgggctgttaaagata
actattctttcattattgggaaaaaaaaaaactcctgagttccatttggc
tggcatgattgaagctttgaagatgtgagtcatacagacagccatacttg
aagtcataatttggccattcatgaccatcctaatcatcaaagaaaggccc
tgctcttttattgtttatattccatcaaacagcattcaaacccacttagc
aaacacttattcatagtttctagaagaaacatagcttttgatttcttgca
aaccctatcacgagatattcttatcattcagtgatgcaattcgtattttt
ctaatgtgtagtgttccaagtc
gaattctcagaaaatagaaaccatctgtttcaaagcatgacaaggaagaa
gaaatggctctgaaagcatatcatagtgggctgggctcatcctataggtc
ctttgaaaactaaaccatcatgaagggtttgcacataagagtgatgggtt
tgagaatgagactcatgtaaccgtaaatggcaaacactgctgaggatcat
tagaaatgttaactttccagacttgaaagatggcacagttgagaaagtgc
ttgccatccagcagggaggacctgagtttcatccctggcacccatgtgaa
aaaaccaggcatgagggcacattcttgtaattccagtgaggaagaggtga
agacggttggttatctgggaggttcctgggcagccaatgatagactctgt
gtccaaaatgaagttgaaacaccactgctgaaggacacctaagtctgccc
tctaccctctacttgcttatacatgcatgcactcacagaaacatgtgaca
tacactcctgtttttgtcatttgaacatttgctgccctcccacaaataca
cacacacacacacacatacacacacacttttatcaataaaatttggagaa
gccctttttaaaaactatatatatatatttcaaaatctctactcccatga
aaatgttaaccttgaagagttctagcagctattttgatgacttaaagaag
cttcattcttctggaaagaaaggaatagaagacatgttcagtgttacctc
atatcttacttcacattaaacctctaagcttacataagaacagagcctgc
tgtaagaagggaacacatttataagtaagtgttgtgataaacaaagatgt
aggcacgcagcaggcagccatacaacctgtgcttatgccccagatttgca
gggttggtaagctaatgagagtggagtagggtcctatccatttctcattt
caaacaatacactactgtaactagaagaatatgatatttctttagctaca
catggcatatcaaggcaacggggatgagacacagtccacatactgtacaa
aagctgagtttctcgctgtatgacgtcttcgaataaactggtctacctag
tagagaaagagcaacttctgactactcagtttgaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41236752_41237873
seq2: B6Ng01-012E05.b_47_1168

seq1  GAATTCTACACTGATTCTGCATTAAAGTATTAACAAACTCCGGTTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTGATTCTGCATTAAAGTATTAACAAACTCCGGTTTATTG  50

seq1  TTCTCATTTTAAATACCATCTGAAGTAAAAGGAGGGAGAAGGATAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTTAAATACCATCTGAAGTAAAAGGAGGGAGAAGGATAACAGG  100

seq1  AGAGAGAAGGACAGTGAGGGGAAGAGAGAGGATGACAGATGATGCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGGACAGTGAGGGGAAGAGAGAGGATGACAGATGATGCATTTT  150

seq1  CAAATATACACACACATACATACCTGGGTCATAAATTCAAGTTCTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATACACACACATACATACCTGGGTCATAAATTCAAGTTCTCTACA  200

seq1  TCTTTAAAATTCTAGAAGATGTGAAAAAAAAAACAAAGAATTACTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAATTCTAGAAGATGTGAAAAAAAAAACAAAGAATTACTGGGAA  250

seq1  ATTGTTGGATCTTTATAATATCACATGCTCAGAATATATTAACACAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGATCTTTATAATATCACATGCTCAGAATATATTAACACAGTGA  300

seq1  CAAGAAAGAAGAAAAGATATAGTTATATTATTATTATTATTTATTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAGAAAAGATATAGTTATATTATTATTATTATTTATTATTAT  350

seq1  TATTATTATTATTAGTCATCATGAATATAGAAGGGCCGAATTCACAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTAGTCATCATGAATATAGAAGGGCCGAATTCACAGACT  400

seq1  GGAGTGACCAATATTGCCGAGTTTTGCTTTCTTTTCTCTGTGATCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACCAATATTGCCGAGTTTTGCTTTCTTTTCTCTGTGATCCTGGT  450

seq1  ACCCTCCAACCCATTTCCTTTGATTTGCTGAGAGACCTTAACAAGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAACCCATTTCCTTTGATTTGCTGAGAGACCTTAACAAGGAGAC  500

seq1  AGCCTGCACCCTATCTCTTTACGTTTGCTGTGCTCTATGTTGCCCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCACCCTATCTCTTTACGTTTGCTGTGCTCTATGTTGCCCAAATA  550

seq1  TTGAAAAGAATAAATCTAAGGTGTATGCTTTGTGAGTGATCTGCAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGAATAAATCTAAGGTGTATGCTTTGTGAGTGATCTGCAGGAGC  600

seq1  AGGGTGAGTTCTCTAGCCTACTATAATTGCACAGTGTTTACACTTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGTTCTCTAGCCTACTATAATTGCACAGTGTTTACACTTCTCTG  650

seq1  TGTTTCTTATGCTAAAAACCAGCTTCAAAAGTGTTAGAGGCTCTTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTATGCTAAAAACCAGCTTCAAAAGTGTTAGAGGCTCTTCTCTT  700

seq1  GGATTTACTATAGTACCAATCACTCTGCGTGAACTTTGGATTGAAATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTACTATAGTACCAATCACTCTGCGTGAACTTTGGATTGAAATTTC  750

seq1  TTAGGAAATTAAGATTACTTTATTGTATAGGTAATGGGCTGTTAAAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATTAAGATTACTTTATTGTATAGGTAATGGGCTGTTAAAGATA  800

seq1  ACTATTCTTTCATTATTGGGAAAAAAAAAAACTCCTGAGTTCCATTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTTTCATTATTGGGAAAAAAAAAAACTCCTGAGTTCCATTTGGC  850

seq1  TGGCATGATTGAAGC-TTGAAGATGTGAGCCATACAGACAGCCATACTTG  899
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TGGCATGATTGAAGCTTTGAAGATGTGAGTCATACAGACAGCCATACTTG  900

seq1  AAGTCATAATTTGGCCATTCATGACCATCCTAATCATCATAGAAA-GCCC  948
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AAGTCATAATTTGGCCATTCATGACCATCCTAATCATCAAAGAAAGGCCC  950

seq1  TGC-CCTTTATTGTTTATATTCCATCAAACCAGCATTCAAACCCACTTAG  997
      ||| | ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTCTTTTATTGTTTATATTCCATCAAA-CAGCATTCAAACCCACTTAG  999

seq1  CAAACACTAATCCATAGTTCCTAGAGGAAACATAGCTTTTGATTCCTTGC  1047
      |||||||| || ||||||| ||||| |||||||||||||||||| |||||
seq2  CAAACACTTATTCATAGTTTCTAGAAGAAACATAGCTTTTGATTTCTTGC  1049

seq1  AAACCCCTAATCACGAGATATTC-TATCATTCAGTTGATGCAAAATCCTA  1096
      ||||||   |||||||||||||| |||||||||| |||||| || || ||
seq2  AAACCC--TATCACGAGATATTCTTATCATTCAG-TGATGC-AATTCGTA  1095

seq1  -TTTTCT-ATGTGTAAGTGTCTCAAGTC  1122
       |||||| |||||| |||||  ||||||
seq2  TTTTTCTAATGTGT-AGTGTTCCAAGTC  1122

seq1: chr16_41359493_41360651
seq2: B6Ng01-012E05.g_67_1204 (reverse)

seq1  TTCTTCATACTGAGTAGTCCAGAAGTTGCTCTTTTCTCTACCTAAGCTAA  50
      ||||||| |||||||||| |||||||||||| |||||||||   || || 
seq2  TTCTTCAAACTGAGTAGT-CAGAAGTTGCTC-TTTCTCTAC--TAGGTA-  45

seq1  GCACCCAGTTTTATCTGAAGCACGGTCAATACAGCGGAAGAAACTCCAGG  100
          |||| |||||  |||| || ||| ||||||||  ||||||||   |
seq2  --GACCAG-TTTATTCGAAG-AC-GTC-ATACAGCG--AGAAACTC--AG  85

seq1  CTGTTGTACAGTAATGTGGAACTGTGTCTCCATCCCCGTTGCCTTTGATA  150
      || ||||||||| |||||| ||||||||| ||||||||||||| ||||||
seq2  CTTTTGTACAGT-ATGTGG-ACTGTGTCT-CATCCCCGTTGCC-TTGATA  131

seq1  TTGCCATGTTGTAGCTAAAGAAATTATCATATTC-TCTAGTTACAGTAGT  199
       ||||||| |||||||||||||| |||||||||| |||||||||||||||
seq2  -TGCCATG-TGTAGCTAAAGAAA-TATCATATTCTTCTAGTTACAGTAGT  178

seq1  GTTATTGTTTGAAATGAGAAATGGATAGGACCCTACTCCACTCTCATTAG  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TATTGTTTGAAATGAGAAATGGATAGGACCCTACTCCACTCTCATTAG  227

seq1  CTTACCAACCCTGCAAATCTGGGGCATAAGCACAGGTTGTATGGCTGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAACCCTGCAAATCTGGGGCATAAGCACAGGTTGTATGGCTGCCT  277

seq1  GCTGCGTGCCTACATCTTTGTTTATCACAACACTTACTTAT-AATGTGTT  348
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGCGTGCCTACATCTTTGTTTATCACAACACTTACTTATAAATGTGTT  327

seq1  CCCTTCTTACAGCAGGCTCTGTTCTTATGTAAGCTTAGAGGTTTAATGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTACAGCAGGCTCTGTTCTTATGTAAGCTTAGAGGTTTAATGTG  377

seq1  AAGTAAGATATGAGGTAACACTGAACATGTCTTCTATTCCTTTCTTTCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGATATGAGGTAACACTGAACATGTCTTCTATTCCTTTCTTTCCA  427

seq1  GAAGAATGAAGCTTCTTTAAGTCATCAAAATAGCTGCTAGAACTCTTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGAAGCTTCTTTAAGTCATCAAAATAGCTGCTAGAACTCTTCAA  477

seq1  GGTTAACATTTTCATGGGAGTAGAGATTTTGAAATATATATATATAGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACATTTTCATGGGAGTAGAGATTTTGAAATATATATATATAGTTT  527

seq1  TTAAAAAGGGCTTCTCCAAATTTTATTGATAAAAGTGTGTGTGTATGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGGCTTCTCCAAATTTTATTGATAAAAGTGTGTGTGTATGTGT  577

seq1  GTGTGTGTGTGTGTATTTGTGGGAGGGCAGCAAATGTTCAAATGACAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATTTGTGGGAGGGCAGCAAATGTTCAAATGACAAAA  627

seq1  ACAGGAGTGTATGTCACATGTTTCTGTGAGTGCATGCATGTATAAGCAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGTATGTCACATGTTTCTGTGAGTGCATGCATGTATAAGCAAG  677

seq1  TAGAGGGTAGAGGGCAGACTTAGGTGTCCTTCAGCAGTGGTGTTTCAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTAGAGGGCAGACTTAGGTGTCCTTCAGCAGTGGTGTTTCAACT  727

seq1  TCATTTTGGACACAGAGTCTATCATTGGCTGCCCAGGAACCTCCCAGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGACACAGAGTCTATCATTGGCTGCCCAGGAACCTCCCAGATA  777

seq1  ACCAACCGTCTTCACCTCTTCCTCACTGGAATTACAAGAATGTGCCCTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCGTCTTCACCTCTTCCTCACTGGAATTACAAGAATGTGCCCTCA  827

seq1  TGCCTGGTTTTTTCACATGGGTGCCAGGGATGAAACTCAGGTCCTCCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTTTTTTCACATGGGTGCCAGGGATGAAACTCAGGTCCTCCCTG  877

seq1  CTGGATGGCAAGCACTTTCTCAACTGTGCCATCTTTCAAGTCTGGAAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGCAAGCACTTTCTCAACTGTGCCATCTTTCAAGTCTGGAAAGT  927

seq1  TAACATTTCTAATGATCCTCAGCAGTGTTTGCCATTTACGGTTACATGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTCTAATGATCCTCAGCAGTGTTTGCCATTTACGGTTACATGAG  977

seq1  TCTCATTCTCAAACCCATCACTCTTATGTGCAAACCCTTCATGATGGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCAAACCCATCACTCTTATGTGCAAACCCTTCATGATGGTTT  1027

seq1  AGTTTTCAAAGGACCTATAGGATGAGCCCAGCCCACTATGATATGCTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAAAGGACCTATAGGATGAGCCCAGCCCACTATGATATGCTTTC  1077

seq1  AGAGCCATTTCTTCTTCCTTGTCATGCTTTGAAACAGATGGTTTCTATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATTTCTTCTTCCTTGTCATGCTTTGAAACAGATGGTTTCTATTT  1127

seq1  TCTGAGAATTC  1159
      |||||||||||
seq2  TCTGAGAATTC  1138