BAC Information

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BAC

Clone NameB6Ng01-013G13
Chromosome16 (Build37)
Map Location 42,762,901 - 42,915,416
singlet/doubletdoublet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013G13.bB6Ng01-013G13.g
ACCDH848229DH848230
length1,1281,059
definitionDH848229|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G13, 5' end.DH848230|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,914,267 - 42,915,416)(42,762,901 - 42,763,962)
sequence
gaattcaaaagaagaaatagcttggtgtctgatgtgcttagtttcagttt
tataagcggtaagaactgggtgaaaatctcttgtcttctccatctctaac
tctaagttaaatacatccctccctgaactcagcattttaaaattttcaat
actagtatgagagagggaaatacacagatcctaatattttcttgagaatt
aagaattctcgaacacactaaaacacttcatacgtatttttgtaacatta
atgcaaaaccaaggcttagaacaaattgcaaatatttttctgaatgtcca
gttgtttccttttcactggctcatgcattagttactctcatagcaacagg
gacacaaggtggcactgtcgtgctgacattcattccaggccctttctaaa
tggacaaatttgaaagaggcaagaggggctattgtggcagttaaaaccag
agttgtgatgctggcctcccaggtctgccaggacttacaggggctaagga
aaaacaaatctttttgaatttcatgaaaatcacattatgattttatagaa
gacagtgtattctctgatggcatcgcctaaatatcatgtctgtgttcata
aaatgttcaaaggcatccagttcagctttgccagtagaaactcagaagtg
agcggtgtaccacggataagctgtggacacggaccacctctccatctagt
ggccagtgggaaagaggagccatggaagctaggctgcactccactcactt
aaaacttacttaaaactgtcttttctcagacgacccgcaggcaattaagt
ccttcagtctgtcaaaaaaataatttttggtttattgcaattattgagtc
attaaatatgaccaataatatatcgtgatatttacttaaccctgatccca
ccacctcaaagttaaagtgctgtgctctctcagaccagagctctttctac
tctcacattgcaaacccaaacttcctcatccacttttagcttataacgaa
actatgaacgagagaagctacaataagctacctaaacaaaattccactgc
tgagactaaaaatagatcgataaggtttactgttttacttccaaagaaaa
aatctcgcaccgagattgtgaacttatt
gaattcattgttattaatagttgagtagtagtattctaattcagcaagag
atgtgcttgtatctagttgtgtgcaagtctgttttccccagtaattaata
gatactcactacagattataaatgatgctgaaatttgtctcttgtacttt
ctgttctcattgctttagcttcaacatcatcatctttatatcaaactgta
tcagtttcttctttttgaagtttcattataatttctaacttttttgaaaa
ttaaaaaaataaggtaatgaggaagaataattaagaatggtaccacatgc
ctttaatcccagcccttgggaggcagaggcaggtagatctctgagtttga
gaccaacatgatatacagagagagttccaggacagcaagagctacacaga
gaaaccccatctcaaacaaaatatataaacaaaaacagaaacgaagaaga
ggaggaagaggaagaagaaaagaagagaaaaagaaataaagacttgggct
ggagagatggctcagccgttaaaggctaggctcacaaccaaaaatataag
aaataaagactaaacaataactctataaagtcatcatagacttcatgagt
atttgcaacatacttaattcacagaagacgttgaggctgttctaacatag
gtacttgttggctgttctcagctgtttgtaaagcagtgctaaaataggat
aatatggatatataaattgattatatctcttccatagcagtgctaagtgt
ttaagaatcacagttgtttaaaaaatccattttattgtgtctttattttt
attatacccggtttgtcatcaacaaacactgtgaagtttcctggaggaga
agaggagctccctgcatttggaagtgtcttccagaagaatatggttttaa
ttattcactgggtatgatttcagatgccgcgtttaatcgtgttgccacaa
tagatgacctcccttggaactgttttttattttgatcctgtaacaataca
ctttagaaaacatcctgctctttgattcgcactactcacatattgtttgt
catcatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42914267_42915416
seq2: B6Ng01-013G13.b_48_1175 (reverse)

seq1  AATAAG-TCACAATCTCTGTTTTGCAGGATTTTTTTTTTCTTTGACAGTA  49
      |||||| |||||||||| |   |||  ||    |||||||||||  ||||
seq2  AATAAGTTCACAATCTCGG---TGCGAGA----TTTTTTCTTTGGAAGTA  43

seq1  AAACAGTAAAACTTATCTGATTCTATTTTTTAAGTCTTCAGCAGTGTGAT  99
      |||||||||| |||||| || |||||||||  |||| ||||||||| || 
seq2  AAACAGTAAACCTTATC-GA-TCTATTTTT--AGTC-TCAGCAGTG-GAA  87

seq1  TTTTGTTTTAGGTAGCTTTATTTGTAGCTCTCTCT-GTTCATAGTTTCTG  148
      ||||| ||||||||||||   |||||||| ||||| ||||||||||||  
seq2  TTTTG-TTTAGGTAGCTT--ATTGTAGCT-TCTCTCGTTCATAGTTTC--  131

seq1  TTTATAAGCTAAAAGTGGATGGAGGAAGTTTGGGTTTGCAATGGTGGAAG  198
       ||||||||||||||||||| ||||||||||||||||||||| |||  ||
seq2  GTTATAAGCTAAAAGTGGAT-GAGGAAGTTTGGGTTTGCAAT-GTG--AG  177

seq1  AGTAGAAAGAGCTTCTGGTCTGAGAGAGCACAGCACTTTAACTTTGAGGT  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGAGC-TCTGGTCTGAGAGAGCACAGCACTTTAACTTTGAGGT  226

seq1  GGTGGGATCAGGGTTAAGTAAATATCACGATATATTATTGGTCATATTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATCAGGGTTAAGTAAATATCACGATATATTATTGGTCATATTTA  276

seq1  ATGACTCAATAATTGCAATAAACCAAAAATTATTTTTTTGACAGACTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAATAATTGCAATAAACCAAAAATTATTTTTTTGACAGACTGAA  326

seq1  GGACTTAATTGCCTGCGGGTCGTCTGAGAAAAGACAGTTTTAAGTAAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAATTGCCTGCGGGTCGTCTGAGAAAAGACAGTTTTAAGTAAGTT  376

seq1  TTAAGTGAGTGGAGTGCAGCCTAGCTTCCATGGCTCCTCTTTCCCACTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAGTGGAGTGCAGCCTAGCTTCCATGGCTCCTCTTTCCCACTGG  426

seq1  CCACTAGATGGAGAGGTGGTCCGTGTCCACAGCTTATCCGTGGTACACCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGATGGAGAGGTGGTCCGTGTCCACAGCTTATCCGTGGTACACCG  476

seq1  CTCACTTCTGAGTTTCTACTGGCAAAGCTGAACTGGATGCCTTTGAACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTGAGTTTCTACTGGCAAAGCTGAACTGGATGCCTTTGAACAT  526

seq1  TTTATGAACACAGACATGATATTTAGGCGATGCCATCAGAGAATACACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAACACAGACATGATATTTAGGCGATGCCATCAGAGAATACACTG  576

seq1  TCTTCTATAAAATCATAATGTGATTTTCATGAAATTCAAAAAGATTTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATAAAATCATAATGTGATTTTCATGAAATTCAAAAAGATTTGTT  626

seq1  TTTCCTTAGCCCCTGTAAGTCCTGGCAGACCTGGGAGGCCAGCATCACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAGCCCCTGTAAGTCCTGGCAGACCTGGGAGGCCAGCATCACAA  676

seq1  CTCTGGTTTTAACTGCCACAATAGCCCCTCTTGCCTCTTTCAAATTTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTTTAACTGCCACAATAGCCCCTCTTGCCTCTTTCAAATTTGTC  726

seq1  CATTTAGAAAGGGCCTGGAATGAATGTCAGCACGACAGTGCCACCTTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAAAGGGCCTGGAATGAATGTCAGCACGACAGTGCCACCTTGTG  776

seq1  TCCCTGTTGCTATGAGAGTAACTAATGCATGAGCCAGTGAAAAGGAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTGCTATGAGAGTAACTAATGCATGAGCCAGTGAAAAGGAAACA  826

seq1  ACTGGACATTCAGAAAAATATTTGCAATTTGTTCTAAGCCTTGGTTTTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACATTCAGAAAAATATTTGCAATTTGTTCTAAGCCTTGGTTTTGC  876

seq1  ATTAATGTTACAAAAATACGTATGAAGTGTTTTAGTGTGTTCGAGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTACAAAAATACGTATGAAGTGTTTTAGTGTGTTCGAGAATTC  926

seq1  TTAATTCTCAAGAAAATATTAGGATCTGTGTATTTCCCTCTCTCATACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTCAAGAAAATATTAGGATCTGTGTATTTCCCTCTCTCATACTA  976

seq1  GTATTGAAAATTTTAAAATGCTGAGTTCAGGGAGGGATGTATTTAACTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAAATTTTAAAATGCTGAGTTCAGGGAGGGATGTATTTAACTTA  1026

seq1  GAGTTAGAGATGGAGAAGACAAGAGATTTTCACCCAGTTCTTACCGCTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGAGATGGAGAAGACAAGAGATTTTCACCCAGTTCTTACCGCTTA  1076

seq1  TAAAACTGAAACTAAGCACATCAGACACCAAGCTATTTCTTCTTTTGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAACTAAGCACATCAGACACCAAGCTATTTCTTCTTTTGAAT  1126

seq1  TC  1150
      ||
seq2  TC  1128

seq1: chr16_42762901_42763962
seq2: B6Ng01-013G13.g_68_1126

seq1  GAATTCATTGTTATTAATAGTTGAGTAGTAGTATTCTAATTCAGCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTATTAATAGTTGAGTAGTAGTATTCTAATTCAGCAAGAG  50

seq1  ATGTGCTTGTATCTAGTTGTGTGCAAGTCTGTTTTCCCCAGTAATTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTGTATCTAGTTGTGTGCAAGTCTGTTTTCCCCAGTAATTAATA  100

seq1  GATACTCACTACAGATTATAAATGATGCTGAAATTTGTCTCTTGTACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCACTACAGATTATAAATGATGCTGAAATTTGTCTCTTGTACTTT  150

seq1  CTGTTCTCATTGCTTTAGCTTCAACATCATCATCTTTATATCAAACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCATTGCTTTAGCTTCAACATCATCATCTTTATATCAAACTGTA  200

seq1  TCAGTTTCTTCTTTTTGAAGTTTCATTATAATTTCTAACTTTTTTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTTCTTTTTGAAGTTTCATTATAATTTCTAACTTTTTTGAAAA  250

seq1  TTAAAAAAATAAGGTAATGAGGAAGAATAATTAAGAATGGTACCACATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATAAGGTAATGAGGAAGAATAATTAAGAATGGTACCACATGC  300

seq1  CTTTAATCCCAGCCCTTGGGAGGCAGAGGCAGGTAGATCTCTGAGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCCCTTGGGAGGCAGAGGCAGGTAGATCTCTGAGTTTGA  350

seq1  GACCAACATGATATACAGAGAGAGTTCCAGGACAGCAAGAGCTACACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACATGATATACAGAGAGAGTTCCAGGACAGCAAGAGCTACACAGA  400

seq1  GAAACCCCATCTCAAACAAAATATATAAACAAAAACAGAAACGAAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCATCTCAAACAAAATATATAAACAAAAACAGAAACGAAGAAGA  450

seq1  GGAGGAAGAGGAAGAAGAAAAGAAGAGAAAAAGAAATAAAGACTTGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAGGAAGAAGAAAAGAAGAGAAAAAGAAATAAAGACTTGGGCT  500

seq1  GGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAAAATATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAAAATATAAG  550

seq1  AAATAAAGACTAAACAATAACTCTATAAAGTCATCATAGACTTCATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGACTAAACAATAACTCTATAAAGTCATCATAGACTTCATGAGT  600

seq1  ATTTGCAACATACTTAATTCACAGAAGACGTTGAGGCTGTTCTAACATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAACATACTTAATTCACAGAAGACGTTGAGGCTGTTCTAACATAG  650

seq1  GTACTTGTTGGCTGTTCTCAGCTGTTTGTAAAGCAGTGCTAAAATAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGTTGGCTGTTCTCAGCTGTTTGTAAAGCAGTGCTAAAATAGGAT  700

seq1  AATATGGATATATAAATTGATTATATCTCTTCCATAGCAGTGCTAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGATATATAAATTGATTATATCTCTTCCATAGCAGTGCTAAGTGT  750

seq1  TTAAGAATCACAGTTGTTTAAAAAATCCATTTTAATGTGTCTTTATTTTT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAAGAATCACAGTTGTTTAAAAAATCCATTTTATTGTGTCTTTATTTTT  800

seq1  ATTATACCC-GTTTGTCATCAACAAAACACTGTGAAGTTTCCT-GAGGAG  848
      ||||||||| ||||||||||||| ||||||||||||||||||| ||||||
seq2  ATTATACCCGGTTTGTCATCAAC-AAACACTGTGAAGTTTCCTGGAGGAG  849

seq1  -AGAGGAGCTCCCTGCA-TTGGAAGTGTC-TCCAGAAGAA-ATGGTTTTA  894
       |||||||||||||||| ||||||||||| |||||||||| |||||||||
seq2  AAGAGGAGCTCCCTGCATTTGGAAGTGTCTTCCAGAAGAATATGGTTTTA  899

seq1  ATTA-TCACT-GGTATGATTTCAGATGCCGCG-TTAATCGTGGTGCCACC  941
      |||| ||||| ||||||||||||||||||||| ||||||||| |||||| 
seq2  ATTATTCACTGGGTATGATTTCAGATGCCGCGTTTAATCGTGTTGCCACA  949

seq1  ATAGATGACCTCCCCTTTGAACCTGTTTTTATTTTGATCCTGTAAAACAC  991
      ||||||||||| ||||| ||||   |||||||||||||||||||    ||
seq2  ATAGATGACCT-CCCTTGGAACTGTTTTTTATTTTGATCCTGTA----AC  994

seq1  ATTACACTTTTAGAAACCATCTTGCTCTTTGTATTCGCACTTTCCTCACA  1041
      | ||||| |||||||| |||| ||||||||| ||||||||  | ||||||
seq2  AATACAC-TTTAGAAAACATCCTGCTCTTTG-ATTCGCAC--TACTCACA  1040

seq1  TATTGTTTGTCATTTCATCAA  1062
      ||||||||||||  |||||||
seq2  TATTGTTTGTCA--TCATCAA  1059