BAC Information

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BAC

Clone NameB6Ng01-014A07
Chromosome16 (Build37)
Map Location 34,265,285 - 34,382,089
singlet/doubletdoublet
Overlap geneKalrn
Upstream geneSnx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014A07.bB6Ng01-014A07.g
ACCDH848682DH848683
length1,108944
definitionDH848682|Mus musculus domesticus DNA, BAC clone: B6Ng01-014A07, 5' end.DH848683|Mus musculus domesticus DNA, BAC clone: B6Ng01-014A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,380,968 - 34,382,089)(34,265,285 - 34,266,223)
sequence
gaattcattgtctggcatcttgtctataccttcactcccaagagaactac
tttgctaagagaactattttctgctaagactcttggtgagacttttggtg
tattctctggggccagagaacatgcaagggtatagtagtttacaccagtt
ttctgtcactcttgcagggtccttcttaacttgagctgaggccttttctc
atcttgcttctgttgggtttgaacatccacaccccaaatctcttcgaggc
accttgttctgagaaatcataagttgcaaaaaacaccttcaaagtttttc
tatccagccactcactgagtgtctaccatgagccaggatgggaatggttg
catgctgtcacggtgtctttctcgccatcagccgtatgcacttatctaac
ctttattgtcctcctggtctgctatctgcttgtagttttgtgcatgcaca
aggagtggaaaggaaaaacccagatatgatcagctagtgaacatccctca
aaattgagagatagggatgaaaatgcacactgggagtaagcagatgtccc
ggcactgtccccagctcggactgctgggagctgagcatatgcttgagata
gtgagtgagggttgtttcttgtcacaggagcttgctcctttttgtcatcc
ctgccattcagctttgttacattcatctgtttgctgctcttaaggtacca
agtgctgaaccctctatcaactctgctattagcaattctgccaagatgct
gagtgttccatcaaggaacacaagtgtcacatcagccaggagagatgaca
agaaattaggatggggttattctttaatgccagtcaaaccaaggtgcctt
tatttgtagcttattgtttgataatatttgcacctcttctactgactcca
gccaaagataaattgggcttaagcagaactgtctttgtgctgcatcgttg
aaaaaaaatgaaataagcagaaggaccagaaagacagctagaggaagagg
aggagggctcaccgcctctctgctgtttaacgcagaagctgatctaatct
gagtgtcacacataagccctcgttgttgaaacttgaagggagcttatagt
ggtcagtc
gaattccagcaacacagacattgcttcagatgtcttaggatggaaagaag
gtcagggacacgccttttaaagcaaagcgggtggggaggcagtgaatgaa
gcctctctgtagccgagagtcagtttccacggtgagatggaattagtcct
ttggctttatattctgggaggatggggaagaagcctagagtagctcttat
tattccgcaagtgccagctcatcctggaaagcaggctttatggaggaccc
gtaggggctcctctcctgacacctaataactattttcaaagccccatggt
tagaagcaacatgatttgaaggacgagaagcaaaggagtacatgcattga
ggtgaaaggagccatggaaacagggcactcggagaatggacttgttgtga
aacttaatcatgagcggcaacaatcaaagtccagaaccttaccctgggtt
agcgttttataacttctgttccttccttgccctttctgaggcagagttac
agaagatccacctatatgaagctacctgaggctagaccaccaaaaagagt
tagataatggtgcccaggactcacacaaggctagcaatagtgtctattcc
cacctctcagccccacaccccatgaggtttctttaggtactggtacagta
cagcaggggctaggcctttaacaggtaaactacatactgctttgtttctt
gcctatcacattttaagactggaaaggactgaacttttcccaagtcactt
aactgtatccccagagaacttcagatattttatagaactaaaactaccca
gcaatggtcaaggctaattttctaatgacgagcatagaaaagaagaaaaa
agtccactggcccacacaccataaagttggaaaacaatccttgttgaaga
gaaacatagtccattcagacagaccccgaaaaaaaatatattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34380968_34382089
seq2: B6Ng01-014A07.b_44_1151 (reverse)

seq1  GACTGA-CAC-ATACAGCTCCCTCACAGGTTCCAACAACGAAGGGCTTTA  48
      |||||| ||| ||| ||||||||  || ||| |||||||| ||||| |||
seq2  GACTGACCACTATA-AGCTCCCT-TCAAGTTTCAACAACG-AGGGC-TTA  46

seq1  TGTGGTGACACTTCAGA-TAGATCCAGCTTTCCTGCGTTAAAAACAGCAG  97
      ||| ||||||| ||||| ||||| ||||||  |||||||  |||||||| 
seq2  TGT-GTGACAC-TCAGATTAGAT-CAGCTT--CTGCGTT--AAACAGCA-  88

seq1  GAGGAAGCCGGTGAGCCCTCCTCCTCTTCCTCTAGCTGTCTTTCTGGTCC  147
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  GAG--AGGCGGTGAGCCCTCCTCCTCTTCCTCTAGCTGTCTTTCTGGTCC  136

seq1  TTTCTGCTTATTTTCATTTTTTTTCAACGATGCAGCACAAAGACAGTTCT  197
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -TTCTGCTTA-TTTCATTTTTTTTCAACGATGCAGCACAAAGACAGTTCT  184

seq1  GGCTTTAAGCCCAATTTATCTTTGGCTGGAGTCAGTAGAAGAGGTGCAAA  247
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  G--CTTAAGCCCAATTTATCTTTGGCTGGAGTCAGTAGAAGAGGTGCAAA  232

seq1  TATTATCAAACAATAAGCTACAAATAAAGGCACCTTGGTTTGACTGGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCAAACAATAAGCTACAAATAAAGGCACCTTGGTTTGACTGGCAT  282

seq1  TAAAGAATAA-CCCATCCTAATTTCTTGTCATCTCTCCTGGCTGATGTGA  346
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATAACCCCATCCTAATTTCTTGTCATCTCTCCTGGCTGATGTGA  332

seq1  CACTTGTGTTCCTTGATGGAACACTCAGCATCTTGGCAGAATTGCTAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGTTCCTTGATGGAACACTCAGCATCTTGGCAGAATTGCTAATA  382

seq1  GCAGAGTTGATAGAGGGTTCAGCACTTGGTACCTTAAGAGCAGCAAACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTGATAGAGGGTTCAGCACTTGGTACCTTAAGAGCAGCAAACAG  432

seq1  ATGAATGTAACAAAGCTGAATGGCAGGGATGACAAAAAGGAGCAAGCTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTAACAAAGCTGAATGGCAGGGATGACAAAAAGGAGCAAGCTCC  482

seq1  TGTGACAAGAAACAACCCTCACTCACTATCTCAAGCATATGCTCAGCTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAGAAACAACCCTCACTCACTATCTCAAGCATATGCTCAGCTCC  532

seq1  CAGCAGTCCGAGCTGGGGACAGTGCCGGGACATCTGCTTACTCCCAGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCCGAGCTGGGGACAGTGCCGGGACATCTGCTTACTCCCAGTGT  582

seq1  GCATTTTCATCCCTATCTCTCAATTTTGAGGGATGTTCACTAGCTGATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCATCCCTATCTCTCAATTTTGAGGGATGTTCACTAGCTGATCA  632

seq1  TATCTGGGTTTTTCCTTTCCACTCCTTGTGCATGCACAAAACTACAAGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGTTTTTCCTTTCCACTCCTTGTGCATGCACAAAACTACAAGCA  682

seq1  GATAGCAGACCAGGAGGACAATAAAGGTTAGATAAGTGCATACGGCTGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGACCAGGAGGACAATAAAGGTTAGATAAGTGCATACGGCTGAT  732

seq1  GGCGAGAAAGACACCGTGACAGCATGCAACCATTCCCATCCTGGCTCATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGAAAGACACCGTGACAGCATGCAACCATTCCCATCCTGGCTCATG  782

seq1  GTAGACACTCAGTGAGTGGCTGGATAGAAAAACTTTGAAGGTGTTTTTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACACTCAGTGAGTGGCTGGATAGAAAAACTTTGAAGGTGTTTTTTG  832

seq1  CAACTTATGATTTCTCAGAACAAGGTGCCTCGAAGAGATTTGGGGTGTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATGATTTCTCAGAACAAGGTGCCTCGAAGAGATTTGGGGTGTGG  882

seq1  ATGTTCAAACCCAACAGAAGCAAGATGAGAAAAGGCCTCAGCTCAAGTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAACCCAACAGAAGCAAGATGAGAAAAGGCCTCAGCTCAAGTTA  932

seq1  AGAAGGACCCTGCAAGAGTGACAGAAAACTGGTGTAAACTACTATACCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACCCTGCAAGAGTGACAGAAAACTGGTGTAAACTACTATACCCT  982

seq1  TGCATGTTCTCTGGCCCCAGAGAATACACCAAAAGTCTCACCAAGAGTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCTCTGGCCCCAGAGAATACACCAAAAGTCTCACCAAGAGTCT  1032

seq1  TAGCAGAAAATAGTTCTCTTAGCAAAGTAGTTCTCTTGGGAGTGAAGGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAAATAGTTCTCTTAGCAAAGTAGTTCTCTTGGGAGTGAAGGTA  1082

seq1  TAGACAAGATGCCAGACAATGAATTC  1122
      ||||||||||||||||||||||||||
seq2  TAGACAAGATGCCAGACAATGAATTC  1108

seq1: chr16_34265285_34266223
seq2: B6Ng01-014A07.g_67_1010

seq1  GAATTCCAGCAACACAGACATTGCTTCAGATGTCTTAGGATGGAAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAACACAGACATTGCTTCAGATGTCTTAGGATGGAAAGAAG  50

seq1  GTCAGGGACACGCCTTTTAAAGCAAAGCGGGTGGGGAGGCAGTGAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGACACGCCTTTTAAAGCAAAGCGGGTGGGGAGGCAGTGAATGAA  100

seq1  GCCTCTCTGTAGCCGAGAGTCAGTTTCCACGGTGAGATGGAATTAGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTGTAGCCGAGAGTCAGTTTCCACGGTGAGATGGAATTAGTCCT  150

seq1  TTGGCTTTATATTCTGGGAGGATGGGGAAGAAGCCTAGAGTAGCTCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTATATTCTGGGAGGATGGGGAAGAAGCCTAGAGTAGCTCTTAT  200

seq1  TATTCCGCAAGTGCCAGCTCATCCTGGAAAGCAGGCTTTATGGAGGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGCAAGTGCCAGCTCATCCTGGAAAGCAGGCTTTATGGAGGACCC  250

seq1  GTAGGGGCTCCTCTCCTGACACCTAATAACTATTTTCAAAGCCCCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGCTCCTCTCCTGACACCTAATAACTATTTTCAAAGCCCCATGGT  300

seq1  TAGAAGCAACATGATTTGAAGGACGAGAAGCAAAGGAGTACATGCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAACATGATTTGAAGGACGAGAAGCAAAGGAGTACATGCATTGA  350

seq1  GGTGAAAGGAGCCATGGAAACAGGGCACTCGGAGAATGGACTTGTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGGAGCCATGGAAACAGGGCACTCGGAGAATGGACTTGTTGTGA  400

seq1  AACTTAATCATGAGCGGCAACAATCAAAGTCCAGAACCTTACCCTGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATCATGAGCGGCAACAATCAAAGTCCAGAACCTTACCCTGGGTT  450

seq1  AGCGTTTTATAACTTCTGTTCCTTCCTTGCCCTTTCTGAGGCAGAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTATAACTTCTGTTCCTTCCTTGCCCTTTCTGAGGCAGAGTTAC  500

seq1  AGAAGATCCACCTATATGAAGCTACCTGAGGCTAGACCACCAAAAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCCACCTATATGAAGCTACCTGAGGCTAGACCACCAAAAAGAGT  550

seq1  TAGATAATGGTGCCCAGGACTCACACAAGGCTAGCAATAGTGTCTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATGGTGCCCAGGACTCACACAAGGCTAGCAATAGTGTCTATTCC  600

seq1  CACCTCTCAGCCCCACACCCCATGAGG-TTCATTAGGTACTGGTACAGTA  649
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  CACCTCTCAGCCCCACACCCCATGAGGTTTCTTTAGGTACTGGTACAGTA  650

seq1  CAGCAGGGGCTAGGCCTTTAACAGGTAAACTACATACTGCTTTGTTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGGCTAGGCCTTTAACAGGTAAACTACATACTGCTTTGTTTCTT  700

seq1  GCCTATCACATTTTAAGACTGGAAAGGACTGAACTTTTCCCAAGTCACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTATCACATTTTAAGACTGGAAAGGACTGAACTTTTCCCAAGTCACTT  750

seq1  AACTGTAT-CCCAGAGAACTTCAGATA-TTTATAGAACTAAAACTACTCA  797
      |||||||| |||||||||||||||||| ||||||||||||||||||| ||
seq2  AACTGTATCCCCAGAGAACTTCAGATATTTTATAGAACTAAAACTACCCA  800

seq1  GCAATGGTCAAGGCAAATTT--CAATGACGAGCATAGAAAAGAAAGAAAA  845
      |||||||||||||| |||||   ||||||||||||||||||| |||||||
seq2  GCAATGGTCAAGGCTAATTTTCTAATGACGAGCATAGAAAAG-AAGAAAA  849

seq1  AAGTCCACTGGCACACACACAAAAAAG-TGGAAAACAATCCATG-TGAAG  893
      |||||||||||| ||||||| | |||| ||||||||||||| || |||||
seq2  AAGTCCACTGGCCCACACACCATAAAGTTGGAAAACAATCCTTGTTGAAG  899

seq1  AGAAACATAAGTCAATCAAGACAAACACAGAAAAAAAATATATAAA  939
      |||||||| |||| ||  ||||| || | |||||||||||||| ||
seq2  AGAAACAT-AGTCCATTCAGACAGACCCCGAAAAAAAATATATTAA  944