BAC Information

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BAC

Clone NameB6Ng01-014E02
Chromosome16 (Build37)
Map Location 34,793,269 - 34,945,905
singlet/doubletdoublet
Overlap geneMylk
Upstream geneMuc13, Itgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14
Downstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E02.bB6Ng01-014E02.g
ACCDH848851DH848852
length1,0261,031
definitionDH848851|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E02, 5' end.DH848852|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,793,269 - 34,794,293)(34,944,876 - 34,945,905)
sequence
gaattcttgggtttttggacccatctcctcctctttcaacatccctcaag
aaagtgagagagagaaggaatgagccagaaagttctaattatccagtctg
ctgacattgtttttatctgcgccactgatattaaatgtggacagcattcc
atttaaatcacagtaccaagaacgacttctgcaaacttgggcctttatcc
ttttgcctgatgcggccaacgttcagttttccaccctgcctcgctccccc
tcagacttctgaaattccacagcacccaatggaactggaaattatctttc
tagaatgtccatccttagggagagccctgaagctggctctgttgtcccct
agttttgatctcccaactgagcttgaccatttgtgcttgaattctcacgt
gctcatcgctggagccatctggacttggcagaaatcttttgccatatttc
cattattggcagtcatggaaaaggaaaagcaatttatctagttttttttt
tacatcttttatgaatattttcattatatctttacctttttctaggcagt
caaatgcacatttagttgcagtttgggtttctggctatggaactttctac
cttgtttaatgctgtcagtcatcaaacagttggtttatttacagtagata
actaggggttgtttgctagcacagctagaccatattcaattaaggaaatc
tttcagtgttctaagcatggtgctgcaggagtcacccctcccagccacct
gaagcagaggatgggatgacatgtttcagacatgctatgagtgtctttaa
atagtccactctgattctgtagaatcaatatgttgggttcctgtcctgcc
cacctcagggcacagaaacacagggagtttgactgtgcttctcccacact
gctgccaggcgggtactgggtttcagggaagcaccagacagccctctggg
ggtgtgagatgtgagaaagcccatttggggactgacacactgaggacagc
gtctaatttcggggtgaggggggggg
gaattccggctatgtacttgtctttaggtgttgctcctctgtactacaca
ctcagcatctttcagatctgcgggtgcactagcacattgccatgggctct
ctggacacgctggcacctttggctgactttcacaccttctgtaagcagct
ctcggctcaggcacactacctccaggagcccatgcttctcctagttgggt
ccatcccagtcccaatccagttcagaagcctactaacaaaacgtatacgt
caagttccctggggacagcaaaggtcccccgcttacctctggggcctagc
agcaaactgggcatttgcttgataagtggttattagaggacagagactgc
agagatcgctgagaacctgggcaattctaatgaattaatactgagataga
agccagaggctgcaaatcacacgttgcacaacgttaagtaagtgctctgt
tacttccttgatcaaatctgctctagatgggagactgaggctagaaggga
aacagcccactaaaatcacaagtaagggtaaagaaccagaaactttccta
ggaaagccgaggcactgctggaaaacatctactcctcatgattgattctg
gtaatctcttttgcttctgcccagcctgcccaagcctaaactactactgc
cctagagatttttccttctttcctggagggaagtctgtccctcatgaaag
tttctagactgctcagtctgaagacagatgggtgcccctttcttatttga
gcagagtgggagggtttgagaagacagttggggagctggtgtcaacaaca
gctttgggtacaggcaggtcccttgcatctctgcctctctgggggacatt
ttgcctttttaggtagtaaactataaaataggcatcaaaccctttaaagt
ctccaaatcagcatttgctgttggctcaaggctccttggagtgacacagg
gttggtaaaggaaggacatccccccttgaagttgcaaggaaacttgaagc
tgaggtgcaaatcttgatgccctcccatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34793269_34794293
seq2: B6Ng01-014E02.b_44_1069

seq1  GAATTCTTGGGTTTTTGGACCCATCTCCTCCTCTTTCAACATCCCTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTTTTTGGACCCATCTCCTCCTCTTTCAACATCCCTCAAG  50

seq1  AAAGTGAGAGAGAGAAGGAATGAGCCAGAAAGTTCTAATTATCCAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGAGAGAGAAGGAATGAGCCAGAAAGTTCTAATTATCCAGTCTG  100

seq1  CTGACATTGTTTTTATCTGCGCCACTGATATTAAATGTGGACAGCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTGTTTTTATCTGCGCCACTGATATTAAATGTGGACAGCATTCC  150

seq1  ATTTAAATCACAGTACCAAGAACGACTTCTGCAAACTTGGGCCTTTATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCACAGTACCAAGAACGACTTCTGCAAACTTGGGCCTTTATCC  200

seq1  TTTTGCCTGATGCGGCCAACGTTCAGTTTTCCACCCTGCCTCGCTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGATGCGGCCAACGTTCAGTTTTCCACCCTGCCTCGCTCCCCC  250

seq1  TCAGACTTCTGAAATTCCACAGCACCCAATGGAACTGGAAATTATCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTCTGAAATTCCACAGCACCCAATGGAACTGGAAATTATCTTTC  300

seq1  TAGAATGTCCATCCTTAGGGAGAGCCCTGAAGCTGGCTCTGTTGTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTCCATCCTTAGGGAGAGCCCTGAAGCTGGCTCTGTTGTCCCCT  350

seq1  AGTTTTGATCTCCCAACTGAGCTTGACCATTTGTGCTTGAATTCTCACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGATCTCCCAACTGAGCTTGACCATTTGTGCTTGAATTCTCACGT  400

seq1  GCTCATCGCTGGAGCCATCTGGACTTGGCAGAAATCTTTTGCCATATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCGCTGGAGCCATCTGGACTTGGCAGAAATCTTTTGCCATATTTC  450

seq1  CATTATTGGCAGTCATGGAAAAGGAAAAGCAATTTATCTAGTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGGCAGTCATGGAAAAGGAAAAGCAATTTATCTAGTTTTTTTTT  500

seq1  TACATCTTTTATGAATATTTTCATTATATCTTTACCTTTTTCTAGGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTTATGAATATTTTCATTATATCTTTACCTTTTTCTAGGCAGT  550

seq1  CAAATGCACATTTAGTTGCAGTTTGGGTTTCTGGCTATGGAACTTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCACATTTAGTTGCAGTTTGGGTTTCTGGCTATGGAACTTTCTAC  600

seq1  CTTGTTTAATGCTGTCAGTCATCAAACAGTTGGTTTATTTACAGTAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTAATGCTGTCAGTCATCAAACAGTTGGTTTATTTACAGTAGATA  650

seq1  ACTAGGGGTTGTTTGCTAGCACAGCTAGACCATATTCAATTAAGGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGGTTGTTTGCTAGCACAGCTAGACCATATTCAATTAAGGAAATC  700

seq1  TTTCAGTGTTCTAAGCATGGTGCTGCAGGAGTCACCCCTCCCAGCCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTTCTAAGCATGGTGCTGCAGGAGTCACCCCTCCCAGCCACCT  750

seq1  GAAGCAGAGGATGGGATGACATGTTTCAGACATGCTATGAGTGTCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGATGGGATGACATGTTTCAGACATGCTATGAGTGTCTTTAA  800

seq1  ATAGTCCACTCTGATTCTGTAGAATCAATATGTT-GGTTCCTGTCCTGCC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAGTCCACTCTGATTCTGTAGAATCAATATGTTGGGTTCCTGTCCTGCC  850

seq1  CACCTCAGGGCACAGAAACACAGGGAGTTTGACTGTGCTTCTCCCACACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGGGCACAGAAACACAGGGAGTTTGACTGTGCTTCTCCCACACT  900

seq1  GCTGCCAGGCGGGTACTGGGTTTCAGGGAAGCACCAAGACAGCCCTCTGG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTGCCAGGCGGGTACTGGGTTTCAGGGAAGCACC-AGACAGCCCTCTGG  949

seq1  GGGTGTGAGATGTGAGAAAGCCCATTTGGGGACTGACACACTGAGGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAGATGTGAGAAAGCCCATTTGGGGACTGACACACTGAGGACAG  999

seq1  CGTCT-ATCTCGGGGTGAGGGGTGGGG  1025
      ||||| || ||||||||||||| ||||
seq2  CGTCTAATTTCGGGGTGAGGGGGGGGG  1026

seq1: chr16_34944876_34945905
seq2: B6Ng01-014E02.g_66_1096 (reverse)

seq1  GGCATGGGAGGGCATCAGGATTTGGCCCTCTAGCTTCAGGTTCCCTTGCC  50
      ||||||||||||||||| ||||||  |||| ||||||| ||| ||||| |
seq2  GGCATGGGAGGGCATCAAGATTTGCACCTC-AGCTTCAAGTTTCCTTG-C  48

seq1  AGCCTCAGGGGTGGCTGTCCTTCCCTTACCCACCCTGTGTCACTCCCAGG  100
      | | ||| ||| || ||||||||| ||||| ||||||||||||||| |||
seq2  AACTTCAAGGGGGGATGTCCTTCCTTTACCAACCCTGTGTCACTCCAAGG  98

seq1  AGCCTTGAGCCAACAGCAAATGCTGATTTGGAGAACTTTAAAGGGTTTGA  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCCTTGAGCCAACAGCAAATGCTGATTTGGAG-ACTTTAAAGGGTTTGA  147

seq1  TGCCTA-TTTATAGTTAACTACCTAAAAAGGC-AAATGT-CCCCAGAGAG  197
      |||||| ||||||||| ||||||||||||||| |||||| ||||||||||
seq2  TGCCTATTTTATAGTTTACTACCTAAAAAGGCAAAATGTCCCCCAGAGAG  197

seq1  GCAGAGATGC-AGGGACCTGCCTGTACCCAAAGCTGTTGTTGACACCAGC  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATGCAAGGGACCTGCCTGTACCCAAAGCTGTTGTTGACACCAGC  247

seq1  TCCCCAACTGTCTTCTCAAACCCTCCCACTCTGCTCAATTAAGAAAGGGG  296
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCCCAACTGTCTTCTCAAACCCTCCCACTCTGCTCAAATAAGAAAGGGG  297

seq1  CACCCATCTGTCTTCAGACTGAGCAGTCTAGAAACTTTCATGAGGGACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTGTCTTCAGACTGAGCAGTCTAGAAACTTTCATGAGGGACAG  347

seq1  ACTTCCCTCCAGGAAAGAAGGAAAAATCTCTAGGGCAGTAGTAGTTTAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCCAGGAAAGAAGGAAAAATCTCTAGGGCAGTAGTAGTTTAGG  397

seq1  CTTGGGCAGGCTGGGCAGAAGCAAAAGAGATTACCAGAATCAATCATGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCAGGCTGGGCAGAAGCAAAAGAGATTACCAGAATCAATCATGAG  447

seq1  GAGTAGATGTTTTCCAGCAGTGCCTCGGCTTTCCTAGGAAAGTTTCTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATGTTTTCCAGCAGTGCCTCGGCTTTCCTAGGAAAGTTTCTGGT  497

seq1  TCTTTACCCTTACTTGTGATTTTAGTGGGCTGTTTCCCTTCTAGCCTCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCCTTACTTGTGATTTTAGTGGGCTGTTTCCCTTCTAGCCTCAG  547

seq1  TCTCCCATCTAGAGCAGATTTGATCAAGGAAGTAACAGAGCACTTACTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATCTAGAGCAGATTTGATCAAGGAAGTAACAGAGCACTTACTTA  597

seq1  ACGTTGTGCAACGTGTGATTTGCAGCCTCTGGCTTCTATCTCAGTATTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTGCAACGTGTGATTTGCAGCCTCTGGCTTCTATCTCAGTATTAA  647

seq1  TTCATTAGAATTGCCCAGGTTCTCAGCGATCTCTGCAGTCTCTGTCCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGAATTGCCCAGGTTCTCAGCGATCTCTGCAGTCTCTGTCCTCT  697

seq1  AATAACCACTTATCAAGCAAATGCCCAGTTTGCTGCTAGGCCCCAGAGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCACTTATCAAGCAAATGCCCAGTTTGCTGCTAGGCCCCAGAGGT  747

seq1  AAGCGGGGGACCTTTGCTGTCCCCAGGGAACTTGACGTATACGTTTTGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGGGACCTTTGCTGTCCCCAGGGAACTTGACGTATACGTTTTGTT  797

seq1  AGTAGGCTTCTGAACTGGATTGGGACTGGGATGGACCCAACTAGGAGAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTTCTGAACTGGATTGGGACTGGGATGGACCCAACTAGGAGAAG  847

seq1  CATGGGCTCCTGGAGGTAGTGTGCCTGAGCCGAGAGCTGCTTACAGAAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTCCTGGAGGTAGTGTGCCTGAGCCGAGAGCTGCTTACAGAAGG  897

seq1  TGTGAAAGTCAGCCAAAGGTGCCAGCGTGTCCAGAGAGCCCATGGCAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGTCAGCCAAAGGTGCCAGCGTGTCCAGAGAGCCCATGGCAATG  947

seq1  TGCTAGTGCACCCGCAGATCTGAAAGATGCTGAGTGTGTAGTACAGAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGCACCCGCAGATCTGAAAGATGCTGAGTGTGTAGTACAGAGGA  997

seq1  GCAACACCTAAAGACAAGTACATAGCCGGAATTC  1030
      ||||||||||||||||||||||||||||||||||
seq2  GCAACACCTAAAGACAAGTACATAGCCGGAATTC  1031