BAC Information

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BAC

Clone NameB6Ng01-014E06
Chromosome16 (Build37)
Map Location 88,723,422 - 88,830,405
singlet/doubletdoublet
Overlap geneKrtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik
Downstream geneKrtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E06.bB6Ng01-014E06.g
ACCDH848859DH848860
length1,1491,084
definitionDH848859|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E06, 5' end.DH848860|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,723,422 - 88,724,574)(88,829,304 - 88,830,405)
sequence
gaattcaaaacgtaatcaacaaaatgaagtgatacatgcttaagtagggt
gttatgctaatggccctgacttgatcatcagacattatataagggtgagg
ataaaacacatagtgcccccatagagatgagcagatattatgcacagatt
aaaatgtatgatataactgaataaaaaaagtctttatggaacacttcact
gtatatagtttatataagaaaataatgttaaacatatcaagaacccaatt
cattagtaagtaaaaaacaggagaggaacatcctggctgttgggggtttg
gccaatctgctacaaaactggggcatcatctctgcctctattccccagtg
caaagctctgcccaccaaacaggaagaagtacaatccaaatggaggggaa
attggagctctgctctgttctgaagctattcctggctaggacttgagctt
tcccaggtaaactgatgaaagaaagaaattggagtatccagctgaggcct
ctcattccaaccatctgagcctcagacaaagcaggaagagtcccacccct
cttcctctgtaccacattttctctgctccctcacccatgacttctctctt
gctctcctcctctttctctctctccttcttgccccctccttcttctcctc
cttctttgctcttcccttttccctctgtcccttctctaccctcccttcct
ccttatcttcctcactcatttcttcttctgtctcttttcctttccctctc
tcctacccactttctttaaggtcacctatcttaccctgacaaatatatac
agaataagcatgacacttgctctttgtgcccatgcatcttactactattc
tctgccatgattcttttaaaagtagagcagatggttatacctcagggtca
aggaaaaggtcagatccccagagtaccatggcagggaaagtcaccttttt
ataactccctctattttggtatcttggttgcttctcctaaggactaagta
gaaatatatctctgtttgtacccaattcctatgctggcttctactctgag
caggaaggtacacaagcagttactagaatacaatcaccctcacctcagct
gtcaggaattgaagaatggcgaaggtactgatattgacaaccacatgtt
gaattcacacctttgttcatcacaatatttggtatataacaagaacccaa
taattcttttccattgaatgcctcactgaaaacaaaatgtcggaagtaat
tacatgaacaaatgggcccatgaaggaatataaatctctcaagctatgaa
agatgacacaatatagggcttatatatgaattttcttcctgagtgtctgc
ttttctgtcaaacaaaatattagggttatcagaaaacaaaatctgagaac
agttaaagcatcagatgcattgaataaatgtgtcctcaattaaaagaaaa
cactagaatgccaaaattgatgccacagacataagtttatttaaaataaa
cgtgagtgaacaaatcctcaagaaatgagagaagaaatttagaaagatgg
atttagaaagaatggattcagaaagaagtgatccaagcatttacataata
gttgcaatgctagctctctattgtagtagagttgaaaggtcaaaggcagg
ttaaaggtcaaggttacttcatcctccaaaaataatttgcttccaggtgt
atcacgatgctgagtcctggggagacaaacactcattgatcaatcctaaa
tgttggcgaagacatttgagttccatcaggtagcgaaaccttcatgagac
aaccgggatgctcagaaatttgacccgcaaaagccagagctgtagcctgg
ctggtagtaagatgactggatactcttagaagaaaagtatcctggacggt
agaagttggatccacagccctgagagcgaatgccagagcttccaaaccca
aaagctccaaagccagtattgccatatccaaaagatccggtaaagcctcc
ctggcaggggctggagaagtattgcttaggccggaaacaggatgtgtgga
aggatgcagaccccacacagggcaagtggccttcaagtggctcactgagg
tctctgctgtcatgtagaaagagatcccagctggaagtctttggagatag
actacatgctggtgggtagaggagtgtagtagagactgcttgctcagaaa
ctcaaagactgggaggagtagtttccgagttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88723422_88724574
seq2: B6Ng01-014E06.b_41_1189

seq1  GAATTCAAAACGTAATCAACAAAATGAAGTGATACATGCTTAAGTAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACGTAATCAACAAAATGAAGTGATACATGCTTAAGTAGGGT  50

seq1  GTTATGCTAATGGCCCTGACTTGATCATCAGACATTATATAAGGGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTAATGGCCCTGACTTGATCATCAGACATTATATAAGGGTGAGG  100

seq1  ATAAAACACATAGTGCCCCCATAGAGATGAGCAGATATTATGCACAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACATAGTGCCCCCATAGAGATGAGCAGATATTATGCACAGATT  150

seq1  AAAATGTATGATATAACTGAATAAAAAAAGTCTTTATGGAACACTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATGATATAACTGAATAAAAAAAGTCTTTATGGAACACTTCACT  200

seq1  GTATATAGTTTATATAAGAAAATAATGTTAAACATATCAAGAACCCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGTTTATATAAGAAAATAATGTTAAACATATCAAGAACCCAATT  250

seq1  CATTAGTAAGTAAAAAACAGGAGAGGAACATCCTGGCTGTTGGGGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTAAGTAAAAAACAGGAGAGGAACATCCTGGCTGTTGGGGGTTTG  300

seq1  GCCAATCTGCTACAAAACTGGGGCATCATCTCTGCCTCTATTCCCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCTGCTACAAAACTGGGGCATCATCTCTGCCTCTATTCCCCAGTG  350

seq1  CAAAGCTCTGCCCACCAAACAGGAAGAAGTACAATCCAAATGGAGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTGCCCACCAAACAGGAAGAAGTACAATCCAAATGGAGGGGAA  400

seq1  ATTGGAGCTCTGCTCTGTTCTGAAGCTATTCCTGGCTAGGACTTGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCTCTGCTCTGTTCTGAAGCTATTCCTGGCTAGGACTTGAGCTT  450

seq1  TCCCAGGTAAACTGATGAAAGAAAGAAATTGGAGTATCCAGCTGAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTAAACTGATGAAAGAAAGAAATTGGAGTATCCAGCTGAGGCCT  500

seq1  CTCATTCCAACCATCTGAGCCTCAGACAAAGCAGGAAGAGTCCCACCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCAACCATCTGAGCCTCAGACAAAGCAGGAAGAGTCCCACCCCT  550

seq1  CTTCCTCTGTACCACATTTTCTCTGCTCCCTCACCCATGACTTCTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGTACCACATTTTCTCTGCTCCCTCACCCATGACTTCTCTCTT  600

seq1  GCTCTCCTCCTCTTTCTCTCTCTCCTTCTTGCCCCCTCCTTCTTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCCTCTTTCTCTCTCTCCTTCTTGCCCCCTCCTTCTTCTCCTC  650

seq1  CTTCTTTGCTCTTCCCTTTTCCCTCTGTCCCTTCTCTACCCTCCCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCTCTTCCCTTTTCCCTCTGTCCCTTCTCTACCCTCCCTTCCT  700

seq1  CCTTATCTTCCTCACTCATTTCTTCTTCTGTCTCTTTTCCTTTCCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTTCCTCACTCATTTCTTCTTCTGTCTCTTTTCCTTTCCCTCTC  750

seq1  TCCTACCCACTTTCTTTAAGGTCACCTATCTTACCCTGACAAATATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCACTTTCTTTAAGGTCACCTATCTTACCCTGACAAATATATAC  800

seq1  AGAATAAGCATGACACTTGCTCTTTGTGCCCATGCATCTTACTACAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAATAAGCATGACACTTGCTCTTTGTGCCCATGCATCTTACTACTATTC  850

seq1  TCTGCCATGATTCTTTTAAAAGTAGAGCAGATGGTTATACCTCAGGGTC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTGCCATGATTCTTTTAAAAGTAGAGCAGATGGTTATACCTCAGGGTCA  900

seq1  AGGAAAAGGTCAGATCCCCAGAGTACCAAGGCAGGGAAAGTCACC-TTTT  948
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGGAAAAGGTCAGATCCCCAGAGTACCATGGCAGGGAAAGTCACCTTTTT  950

seq1  AT-ACTCCCTCTTATTTTGTATCTT-GTTGCTTCTCCT-AGGACTAAGTA  995
      || |||||||||  ||| ||||||| |||||||||||| |||||||||||
seq2  ATAACTCCCTCTATTTTGGTATCTTGGTTGCTTCTCCTAAGGACTAAGTA  1000

seq1  G-AATATATCTCCTGGTTTGTACCCAATTCCTATTGCT-GCTTCTTACTT  1043
      | ||||||||||   |||||||||||||||||| |||| ||||| ||| |
seq2  GAAATATATCTC--TGTTTGTACCCAATTCCTA-TGCTGGCTTC-TAC-T  1045

seq1  CTGAGCAGGGAAGTTACACAGCCAGTTACTAG-ATACAATCACCCTTCAC  1092
      ||||||| ||||| ||||||  |||||||||| |||||||||||||   |
seq2  CTGAGCA-GGAAGGTACACAAGCAGTTACTAGAATACAATCACCCTCACC  1094

seq1  TCAGCTGTCCAAGGAAAATGAAGAAATGCGAA-GTACTTGATATTGACAG  1141
      |||||||||  ||| || |||||||  ||||| |||| ||||||||||  
seq2  TCAGCTGTC--AGG-AATTGAAGAATGGCGAAGGTAC-TGATATTGAC--  1138

seq1  AACCAACATGTT  1153
      |||| |||||||
seq2  AACC-ACATGTT  1149

seq1: chr16_88829304_88830405
seq2: B6Ng01-014E06.g_66_1149 (reverse)

seq1  TGCAACTCTGGAAACTACTCCTCACAGTCTTTTGGAGGTTTCTTGAGGCA  50
      |||||||| |||||||||||||| ||||||||  || ||||| ||| |||
seq2  TGCAACTC-GGAAACTACTCCTCCCAGTCTTT--GA-GTTTC-TGA-GCA  44

seq1  GCCAGTCTCTACCTACAACTCCTTCTACCCCACCAGCAATGTAGTCTATT  100
        ||||||||| |||| ||||| |||| ||||||||| |||||||||| |
seq2  AGCAGTCTCTA-CTAC-ACTCC-TCTA-CCCACCAGC-ATGTAGTCTA-T  88

seq1  CTCCAAAGAACTTCCAGCTGGGATCCTCTTTCTACAATGGACAGCAGGAG  150
      |||||||| ||||||||||||||| |||||||||||   ||||||| |||
seq2  CTCCAAAG-ACTTCCAGCTGGGAT-CTCTTTCTACA--TGACAGCA-GAG  133

seq1  ACCTTCAGTGAGCCACTTGAAGGCCACTTGCCCTGTGTGGGGTCTGCATC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACC-TCAGTGAGCCACTTGAAGGCCACTTGCCCTGTGTGGGGTCTGCATC  182

seq1  CTTCCACACATCCTGTTTCCGGCCTAAGCAATACTTCTCCAGCCCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACACATCCTGTTTCCGGCCTAAGCAATACTTCTCCAGCCCCTGCC  232

seq1  AGGGAGGCTTTACCGGATCTTTTGGATATGGCAATACTGGCTTTGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCTTTACCGGATCTTTTGGATATGGCAATACTGGCTTTGGAGCT  282

seq1  TTTGGGTTTGGAAGCTCTGGCATTCGCTCTCAGGGCTGTGGATCCAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTGGAAGCTCTGGCATTCGCTCTCAGGGCTGTGGATCCAACTT  332

seq1  CTACCGTCCAGGATACTTTTCTTCTAAGAGTATCCAGTCATCTTACTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGTCCAGGATACTTTTCTTCTAAGAGTATCCAGTCATCTTACTACC  382

seq1  AGCCAGGCTACAGCTCTGGCTTTTGCGGGTCAAATTTCTGAGCATCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTACAGCTCTGGCTTTTGCGGGTCAAATTTCTGAGCATCCCGG  432

seq1  TTGTCTCATGAAGGTTTCGCTACCTGATGGAACTCAAATGTCTTCGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCATGAAGGTTTCGCTACCTGATGGAACTCAAATGTCTTCGCCAA  482

seq1  CATTTAGGATTGATCAATGAGTGTTTGTCTCCCCAGGACTCAGCATCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGATTGATCAATGAGTGTTTGTCTCCCCAGGACTCAGCATCGTG  532

seq1  ATACACCTGGAAGCAAATTATTTTTGGAGGATGAAGTAACCTTGACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTGGAAGCAAATTATTTTTGGAGGATGAAGTAACCTTGACCTTT  582

seq1  AACCTGCCTTTGACCTTTCAACTCTACTACAATAGAGAGCTAGCATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTTTGACCTTTCAACTCTACTACAATAGAGAGCTAGCATTGCA  632

seq1  ACTATTATGTAAATGCTTGGATCACTTCTTTCTGAATCCATTCTTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATGTAAATGCTTGGATCACTTCTTTCTGAATCCATTCTTTCTAA  682

seq1  ATCCATCTTTCTAAATTTCTTCTCTCATTTCTTGAGGATTTGTTCACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTTTCTAAATTTCTTCTCTCATTTCTTGAGGATTTGTTCACTCA  732

seq1  CGTTTATTTTAAATAAACTTATGTCTGTGGCATCAATTTTGGCATTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTATTTTAAATAAACTTATGTCTGTGGCATCAATTTTGGCATTCTAG  782

seq1  TGTTTTCTTTTAATTGAGGACACATTTATTCAATGCATCTGATGCTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTTAATTGAGGACACATTTATTCAATGCATCTGATGCTTTAA  832

seq1  CTGTTCTCAGATTTTGTTTTCTGATAACCCTAATATTTTGTTTGACAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCAGATTTTGTTTTCTGATAACCCTAATATTTTGTTTGACAGAA  882

seq1  AAGCAGACACTCAGGAAGAAAATTCATATATAAGCCCTATATTGTGTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACTCAGGAAGAAAATTCATATATAAGCCCTATATTGTGTCAT  932

seq1  CTTTCATAGCTTGAGAGATTTATATTCCTTCATGGGCCCATTTGTTCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAGCTTGAGAGATTTATATTCCTTCATGGGCCCATTTGTTCATG  982

seq1  TAATTACTTCCGACATTTTGTTTTCAGTGAGGCATTCAATGGAAAAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTCCGACATTTTGTTTTCAGTGAGGCATTCAATGGAAAAGAAT  1032

seq1  TATTGGGTTCTTGTTATATACCAAATATTGTGATGAACAAAGGTGTGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGTTCTTGTTATATACCAAATATTGTGATGAACAAAGGTGTGAAT  1082

seq1  TC  1102
      ||
seq2  TC  1084