BAC Information

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BAC

Clone NameB6Ng01-014G11
Chromosome16 (Build37)
Map Location 24,591,131 - 24,712,513
singlet/doubletdoublet
Overlap geneLpp
Upstream geneRtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014G11.bB6Ng01-014G11.g
ACCDH848961DH848962
length1,1571,131
definitionDH848961|Mus musculus domesticus DNA, BAC clone: B6Ng01-014G11, 5' end.DH848962|Mus musculus domesticus DNA, BAC clone: B6Ng01-014G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,711,330 - 24,712,513)(24,591,131 - 24,591,825)
sequence
gaattcagaagtagagcacattacatttcaaggagatccatctggcaggc
tgacgtggtaataagttcctgtaattgtcaggtcaggcagattacagatc
caggctgtcaattcttcagctgaagttttattttgttattggtagctcat
taaaacacacacccaaaatactgcttgttattctgtatatgaaaactgtc
ttctttcctccttggcactgatgaagaagggcggagtgtgctcctctaag
ggctgatcactgacagggattccacagtgcagaagttcaagaaagaacac
agagtgccatctcatagacaacttcatcccagaagaaggatggcaacttg
tgaccccaggtgacactcaagagcgtgaatggtgctggaatgcgtgaact
ctctccgctaattctcaaatacacaaatctacttgtccagtctatattct
atgcactttgaatcatctccagaatatttacaatgagcaatgggatagga
aagctacataagcagttggggtttgacagatgcagaacaacaggaaacaa
gtgtatcctcaccaaggacaagtgcagcctttaactcccagcccacgtgg
ttaaaatgacagattaggaaccgagagaaacaaactttgtgttagagaat
gacagaaaagcagactttctcacagatttaaggagggagtgaaagattct
acttcattttcaggtaagaaaatgcaggtttccttaggaagtgacacact
ttcatcttttattgtctttgagttctagtagggttcaagtctgagaaaat
agcctgtgtaaaatccaggctccccagcattgattaagatatatgggaaa
aatgatttcaactcttaactgatttctttacatctaaacatggatagaat
gcccttgtctccagaggacttcagaggcaacagataaatgacatttgcaa
ctgcattactagttaatgcacaaattatgtttatcagtagaaactagtct
aaagtagacttctacattagcagacactaaattatgggaaccacatactc
taggtaagagaactatgctcttgggagatccaatccaaagatgtagctat
tgattcataccttgatacgagagaccctctttatcccttggctgaataca
acatgcc
gaattctcttccattgaactggcttcaagttcagtggatgctgatagtgc
acaatgtattagtgccactactgtagccgtggggataccttgctggacag
gtgggtgtggttcctagacttgcaggcttggtatgcctgctgattgtgct
ctagcctggcagtttgcatgctccttctggatgctctgcagggaggattc
ttgcaaggtgattcctgctggattcctccaagttctgagtttaatgtgct
gtgtcttcagaaacaggaccttattttcaaatcctgggaggcaaccaagg
ctaatggcatttgcctctgtttggaggagtctcttggctaacaacttgaa
ggcaggttttccatgtttgtcacaggggattttggtagctattctttgag
tcctgggggcattatcatcccaagtagttaactccatttaatttaccccc
tctctgtatattataattataacatataattattatataatataattata
atgtataaggtttatatattctatataatgtatttttaaggaaatctaat
atttctctatggttttcaaacaaccattctctatctatactcccctccct
ctcctccatctccctccacagttaaagttcctcctttttccccctttccc
cttcatagcaactgtattcaacctagcgccttcaccccctccacaccatg
ggctcttccactaaccatggttctttttaccttcatggcttctgcaggca
gtctagattgcatatacccatatttatggatttgcagctaggatccacga
atgggaaagaataggcagtgttttgtcttgcttggtctgggttacctcag
tcagtataatagtctataactcaggccatttacttgcaaatttcataatt
taacttttcttggtccagatggattcacagcagaattctacctatctttt
cattccttcatgagccagtagcacagaatgtttacatacataggtcaata
aacatataaggtaccataaataaacttaataaattcctgatccatctgat
aggatggaggaaagtcctctgacaagaaacctggctctctatgttacact
gcctctttcaaagtggggaagaccggaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24711330_24712513
seq2: B6Ng01-014G11.b_48_1204 (reverse)

seq1  GGCATGTTTGTATTCCAGCCAGAGGGATTAAAGAGGCTCATCT-GTATTC  49
      |||||| ||||||| |||||| ||||| |||||||| || ||| ||| ||
seq2  GGCATG-TTGTATT-CAGCCA-AGGGA-TAAAGAGGGTC-TCTCGTA-TC  44

seq1  CAG--ATGAATCATATAGACCTACATCTTTGGATGTGATCCTTCGCAAGA  97
       ||  |||||||| ||||  ||||||||||||||  ||||  || |||||
seq2  AAGGTATGAATCA-ATAG--CTACATCTTTGGATTGGATC--TCCCAAGA  89

seq1  GCATAGGTTCTC-TACCTAGAGTATGTGGTTTCCCCATAATGTTTAGTGT  146
      ||||| |||||| ||||||||||||||||||  |||||||  ||||||||
seq2  GCATA-GTTCTCTTACCTAGAGTATGTGGTT--CCCATAA--TTTAGTGT  134

seq1  CTGGCTAATGTAGAAGTCCTACCTTTAAGGACTAAGTTTCCTACTTGATA  196
      || |||||||||||||| ||| |||||  |||| ||||| |||| |||||
seq2  CT-GCTAATGTAGAAGT-CTA-CTTTA--GACT-AGTTT-CTAC-TGATA  176

seq1  AACATAATTTGGTGCATTTAACTAGTAATTGCAGTTTGCAAATTGTCATT  246
      |||||||||| ||||| ||||||||||| ||||| ||||||| |||||||
seq2  AACATAATTT-GTGCA-TTAACTAGTAA-TGCAG-TTGCAAA-TGTCATT  221

seq1  TATCTGTTGCCTCTGAAGTTCCTCTGGAGACAAGGGCATTCTTATCCATG  296
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TATCTGTTGCCTCTGAAG-TCCTCTGGAGACAAGGGCATTC-TATCCATG  269

seq1  TTTAGATGTAAAGAAATCAGTTAAGAGTTGAAATCATTTTTTCCATATAT  346
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTAGATGTAAAGAAATCAGTTAAGAGTTGAAATCATTTTTCCCATATAT  319

seq1  CTTAATCAATGCTGGGGAGCCTGGATTTTACACAGGCTATTTTCTCAGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAATGCTGGGGAGCCTGGATTTTACACAGGCTATTTTCTCAGAC  369

seq1  TTGAACCCTACTAGAACTCAAAGACAATAAAAGATGAAAGTGTGTCACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCTACTAGAACTCAAAGACAATAAAAGATGAAAGTGTGTCACTT  419

seq1  CCTAAGGAAACCTGCATTTTCTTACCTGAAAATGAAGTAGAATCTTTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGAAACCTGCATTTTCTTACCTGAAAATGAAGTAGAATCTTTCAC  469

seq1  TCCCTCCTTAAATCTGTGAGAAAGTCTGCTTTTCTGTCATTCTCTAACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTAAATCTGTGAGAAAGTCTGCTTTTCTGTCATTCTCTAACAC  519

seq1  AAAGTTTGTTTCTCTCGGTTCCTAATCTGTCATTTTAACCACGTGGGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGTTTCTCTCGGTTCCTAATCTGTCATTTTAACCACGTGGGCTG  569

seq1  GGAGTTAAAGGCTGCACTTGTCCTTGGTGAGGATACACTTGTTTCCTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAAAGGCTGCACTTGTCCTTGGTGAGGATACACTTGTTTCCTGTT  619

seq1  GTTCTGCATCTGTCAAACCCCAACTGCTTATGTAGCTTTCCTATCCCATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCATCTGTCAAACCCCAACTGCTTATGTAGCTTTCCTATCCCATT  669

seq1  GCTCATTGTAAATATTCTGGAGATGATTCAAAGTGCATAGAATATAGACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGTAAATATTCTGGAGATGATTCAAAGTGCATAGAATATAGACT  719

seq1  GGACAAGTAGATTTGTGTATTTGAGAATTAGCGGAGAGAGTTCACGCATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTAGATTTGTGTATTTGAGAATTAGCGGAGAGAGTTCACGCATT  769

seq1  CCAGCACCATTCACGCTCTTGAGTGTCACCTGGGGTCACAAGTTGCCATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCATTCACGCTCTTGAGTGTCACCTGGGGTCACAAGTTGCCATC  819

seq1  CTTCTTCTGGGATGAAGTTGTCTATGAGATGGCACTCTGTGTTCTTTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGGGATGAAGTTGTCTATGAGATGGCACTCTGTGTTCTTTCTT  869

seq1  GAACTTCTGCACTGTGGAATCCCTGTCAGTGATCAGCCCTTAGAGGAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTGCACTGTGGAATCCCTGTCAGTGATCAGCCCTTAGAGGAGCA  919

seq1  CACTCCGCCCTTCTTCATCAGTGCCAAGGAGGAAAGAAGACAGTTTTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGCCCTTCTTCATCAGTGCCAAGGAGGAAAGAAGACAGTTTTCAT  969

seq1  ATACAGAATAACAAGCAGTATTTTGGGTGTGTGTTTTAATGAGCTACCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATAACAAGCAGTATTTTGGGTGTGTGTTTTAATGAGCTACCAA  1019

seq1  TAACAAAATAAAACTTCAGCTGAAGAATTGACAGCCTGGATCTGTAATCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATAAAACTTCAGCTGAAGAATTGACAGCCTGGATCTGTAATCT  1069

seq1  GCCTGACCTGACAATTACAGGAACTTATTACCACGTCAGCCTGCCAGATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCTGACAATTACAGGAACTTATTACCACGTCAGCCTGCCAGATG  1119

seq1  GATCTCCTTGAAATGTAATGTGCTCTACTTCTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTTGAAATGTAATGTGCTCTACTTCTGAATTC  1157

seq1: chr16_24591131_24591825
seq2: B6Ng01-014G11.g_511_1197

seq1  ACCCCCTCTCTGTATATTATAATTATAACATATAATTATTATATAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCTCTGTATATTATAATTATAACATATAATTATTATATAATATA  50

seq1  ATTATAATGTATAAGGTTTATATATTCTATATAATGTATTTTTAAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGTATAAGGTTTATATATTCTATATAATGTATTTTTAAGGAAA  100

seq1  TCTAATATTTCTCTATGGTTTTCAAACAACCATTCTCTATCTATACTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATTTCTCTATGGTTTTCAAACAACCATTCTCTATCTATACTCCC  150

seq1  CTCCCTCTCCTCCATCTCCCTCCACAGTTAAAGTTCCTCCTTTTTCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCCTCCATCTCCCTCCACAGTTAAAGTTCCTCCTTTTTCCCCC  200

seq1  TTTCCCCTTCATAGCAACTGTATTCAACCTAGCGCCTTCACCCCCTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTTCATAGCAACTGTATTCAACCTAGCGCCTTCACCCCCTCCAC  250

seq1  ACCATGGGCTCTTCCACTAACCATGGTTCTTTTTACCTTCATGGCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGCTCTTCCACTAACCATGGTTCTTTTTACCTTCATGGCTTCTG  300

seq1  CAGGCAGTCTAGATTGCATATACCCATATTTATGGATTTGCAGCTAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTCTAGATTGCATATACCCATATTTATGGATTTGCAGCTAGGAT  350

seq1  CCACGAATGGGAAAGAATAGGCAGTGTTTTGTCTTGCTTGGTCTGGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAATGGGAAAGAATAGGCAGTGTTTTGTCTTGCTTGGTCTGGGTTA  400

seq1  CCTCAGTCAGTATAATAGTCTATAACTCAGGCCATTTACTTGCAAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCAGTCAGTATAATAGTCTATAACTCAGGCCATTTACTTGCAAATTTC  450

seq1  ATAATTTAACTTTTCTTGGGTCCAGATGGATTCACAGCAGAATTCTACCT  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAATTTAACTTTTCTT-GGTCCAGATGGATTCACAGCAGAATTCTACCT  499

seq1  ATCTTTTCATTCCTTCAATGAAGCCAGTAGCACAGAAATGTTTTAACATA  550
      |||||||||||||||| ||| |||||||||||||| |||||||  |||||
seq2  ATCTTTTCATTCCTTC-ATG-AGCCAGTAGCACAG-AATGTTT--ACATA  544

seq1  CATAGGTCAATAAACATTATAAGTTA-CATAAATAAACTTAAATAAATTC  599
      |||||||||||||||| |||||| || ||||||||||||| |||||||||
seq2  CATAGGTCAATAAACA-TATAAGGTACCATAAATAAACTT-AATAAATTC  592

seq1  CATGAT-CATCTGAATAGATGGAGAAAAGTCCTCTGACAAAGCAACTTGC  648
      | |||| |||||||   ||||||| |||||||||||||||   | || ||
seq2  C-TGATCCATCTGATAGGATGGAGGAAAGTCCTCTGACAAGAAACCTGGC  641

seq1  TCTC-ATGTTAACAACATGCC-CTTCTAGAGTGGGGAAGACTGGAGGAA  695
      |||| ||||| |||   |||| |||  | |||||||||||| |||||||
seq2  TCTCTATGTT-ACA--CTGCCTCTTTCAAAGTGGGGAAGACCGGAGGAA  687