BAC Information

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BAC

Clone NameB6Ng01-014K05
Chromosome16 (Build37)
Map Location 97,831,982 - 97,985,975
singlet/doubletdoublet
Overlap geneTmprss2, Ripk4
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream genePrdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014K05.bB6Ng01-014K05.g
ACCDH849125DH849126
length923969
definitionDH849125|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K05, 5' end.DH849126|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,831,982 - 97,832,906)(97,984,998 - 97,985,975)
sequence
gaattctcaaagccaaggcgggcccgcaccgtcgcctcgggtcaccgcac
gcgatggctgagcactcccttcccacaggtgacggacaattcccgtcttg
ccaaggtccccagggcccagcagcgccgcctgtatcggcccttggcatct
tagccagttttcagtttctctccacctctgtagagaccaaggagcggaag
gagttcaggtaaccagcccgactgccgagattttcccgaaacaaagagaa
ctgcggacaaacctctagctctgcgctctaggaaaggatatcagcacgtg
acgcgagccaagggcttgctccactgaaggaccccggcccccaggaactc
tcttctccaagctattagtcagggatccgcaagaccacaagccaagccgc
tcgaatctatagagttgatctgggatctctgccgcgcgtcacggaatcgg
ggtcgtcgggaccccttcccagtccccaggacgtacactcgggcgaatca
gtcagacggtcgcacctgtagtgccttggcctctcctaactcacttgtac
cctagacgcccaggcccggcaccgccggacggacccaggtcaccccattt
ccttttctgtgccgggaccggagcttgtcaggcgcgctactcacctgttg
cgcttcccgcccctctccgcctctgtccgagctcttggcttcctcgtccg
ctccaagtacacgacctactccagttctcgcttaaatctccggaggcggc
gtcccgggagccagggtgacacccctaaacgcaggcacctcggccagaaa
gagggaacggccaggaaagctgtccaggagggaggaggaggaggaggagt
tccccgaaggaagccaaggagcgctcctcccctagcaccgagagatcaaa
ctggactctaaggctttccccta
gtaaaaaaacaaaaacaaaaacaaaaaacaaaccaagacgcaaggggagt
ggaaaaccagtcctaaaggttggatactatataactctaatataaacaaa
tgttttcgggggagggcggagggagagaaaaaaagattagcgatcgccag
ggcctaagagtgcaagttacaaaagcctcccaggagggcacagaatgttc
tgtttctccactggcatcgggtacatgaactgacccagacgataacattg
tgtaggatttaacgtttgcaaacgaagatgcgcataacccgggaaacctg
agcaagcctggcgatcagatctaagtccacgtctcagttggaaactatac
tttgttgtgttttgcagagtggcagcactgtgagaagtgaactaggtacg
aactacaactacagtgagaagttggccagccacagcgcacgcccctagga
gcgcagggattccaccgatccctggtgggaccgcaacacccggcgctaga
ctctcaccggcagccgctcccttgagggcgtcgggggtgggcccagggga
ctggcggggcgggatggggctagcgtcggaagtgacgtcagcgggcgggg
catgcacctgagcacctgggcggacacggttgagccaggctgcttgcgat
acgcacgcgatggagggcgagggccggggccggtgggctctggggctgct
gcgcaccttcgacgccggcgaattcgcagctgggagaaggtgggctcggg
cggcttcgggcacgtgtacaaggtgcgccatgtgcactggaagacgtggc
tcgcgatcagtgctcgcccagtctgcacgtcgacgacaggtcagctcccg
ggcggggccggtgggatgggggctgcgtgctacgtgagcgcccggaagag
agtttgcgccactcagcaacggtcctcgcagctccagtgcttctggtatc
gagctggcggggagcgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97831982_97832906
seq2: B6Ng01-014K05.b_37_959

seq1  GAATTCTCAAAGCCAAGGCGGGCCCGCACCGTCGCCTCGGGTCACCGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGCCAAGGCGGGCCCGCACCGTCGCCTCGGGTCACCGCAC  50

seq1  GCGATGGCTGAGCACTCCCTTCCCACAGGTGACGGACAATTCCCGTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGCTGAGCACTCCCTTCCCACAGGTGACGGACAATTCCCGTCTTG  100

seq1  CCAAGGTCCCCAGGGCCCAGCAGCGCCGCCTGTATCGGCCCTTGGCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCCCCAGGGCCCAGCAGCGCCGCCTGTATCGGCCCTTGGCATCT  150

seq1  TAGCCAGTTTTCAGTTTCTCTCCACCTCTGTAGAGACCAAGGAGCGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTTTTCAGTTTCTCTCCACCTCTGTAGAGACCAAGGAGCGGAAG  200

seq1  GAGTTCAGGTAACCAGCCCGACTGCCGAGATTTTCCCGAAACAAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGGTAACCAGCCCGACTGCCGAGATTTTCCCGAAACAAAGAGAA  250

seq1  CTGCGGACAAACCTCTAGCTCTGCGCTCTAGGAAAGGATATCAGCACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGACAAACCTCTAGCTCTGCGCTCTAGGAAAGGATATCAGCACGTG  300

seq1  ACGCGAGCCAAGGGCTTGCTCCACTGAAGGACCCCGGCCCCCAGGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGAGCCAAGGGCTTGCTCCACTGAAGGACCCCGGCCCCCAGGAACTC  350

seq1  TCTTCTCCAAGCTATTAGTCAGGGATCCGCAAGACCACAAGCCAAGCCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCAAGCTATTAGTCAGGGATCCGCAAGACCACAAGCCAAGCCGC  400

seq1  TCGAATCTATAGAGTTGATCTGGGATCTCTGCCGCGCGTCACGGAATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCTATAGAGTTGATCTGGGATCTCTGCCGCGCGTCACGGAATCGG  450

seq1  GGTCGTCGGGACCCCTTCCCAGTCCCCAGGACGTACACTCGGGCGAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTCGGGACCCCTTCCCAGTCCCCAGGACGTACACTCGGGCGAATCA  500

seq1  GTCAGACGGTCGCACCTGTAGTGCCTTGGCCTCTCCTAACTCACTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACGGTCGCACCTGTAGTGCCTTGGCCTCTCCTAACTCACTTGTAC  550

seq1  CCTAGACGCCCAGGCCCGGCACCGCCGGACGGACCCAGGTCACCCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACGCCCAGGCCCGGCACCGCCGGACGGACCCAGGTCACCCCATTT  600

seq1  CCTTTTCTGTGCCGGGACCGGAGCTTGTCAGGCGCGCTACTCACCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGTGCCGGGACCGGAGCTTGTCAGGCGCGCTACTCACCTGTTG  650

seq1  CGCTTCCCGCCCCTCTCCGCCTCTGTCCGAGCTCTTGGCTTCCTCGTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCCGCCCCTCTCCGCCTCTGTCCGAGCTCTTGGCTTCCTCGTCCG  700

seq1  CTCCAAGTACACGACCTACTCCAGTTCTCGCTTAAATCTCCGGAGGCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTACACGACCTACTCCAGTTCTCGCTTAAATCTCCGGAGGCGGC  750

seq1  GTCCCGGGAGCCAGGGTGACACCCCTAAACGCAGGCACCTCGGCCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCCCGGGAGCCAGGGTGACACCCCTAAACGCAGGCACCTCGGCCAGAAA  800

seq1  GAGGGAACGGCCAGGAAAGGCTGTCCAGGAGGGAGGAGGAGGAGGAGGAG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGGGAACGGCCAGGAAA-GCTGTCCAGGAGGGAGGAGGAGGAGGAGGAG  849

seq1  TTTCCCCGAGGGAAGCCCAGGGAGCGCTCCTCCCCTAGCACCGAGAGATC  900
       |||||||| ||||| ||| ||||||||||||||||||||||||||||||
seq2  -TTCCCCGAAGGAAG-CCAAGGAGCGCTCCTCCCCTAGCACCGAGAGATC  897

seq1  AAACTGGACTCT-AGGCATTCCCCTA  925
      |||||||||||| |||| ||||||||
seq2  AAACTGGACTCTAAGGCTTTCCCCTA  923

seq1: chr16_97984998_97985975
seq2: B6Ng01-014K05.g_73_1040 (reverse)

seq1  ATCGCTCCCCGCCAGCTCCGAATCCCAGAAGCACTGGAGCTGCGAGGGAC  50
      ||||||||||||||||||   || ||||||||||||||||||||| ||||
seq2  ATCGCTCCCCGCCAGCTC--GATACCAGAAGCACTGGAGCTGCGA-GGAC  47

seq1  CGGTGGCCTGAGTGGCGCAAACTCTCTTCCGCGGCGCTTCACGTAGCACG  100
      || ||  |||||||||||||||||||||||| ||||| ||||||||||||
seq2  CGTTG--CTGAGTGGCGCAAACTCTCTTCCG-GGCGC-TCACGTAGCACG  93

seq1  CAGCCCCCATCCCACCCGGCCCCGCCCGGGAGCTGACCTGTCGTCGACGT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCATCCCA-CCGGCCCCGCCCGGGAGCTGACCTGTCGTCGACGT  142

seq1  GCAGACTGGGCGAGCACTTGATCGCGAGCCACGTCTTCCAGTGCACATGG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAGACTGGGCGAGCAC-TGATCGCGAGCCACGTCTTCCAGTGCACATGG  191

seq1  CGCACCTTGTACACCTGCCCGAAGCCGCCCGAGCCCACCTTCTCCCAGCC  250
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CGCACCTTGTACACGTGCCCGAAGCCGCCCGAGCCCACCTTCTCCCAG-C  240

seq1  TGCGAATTCGCCGGCGTCGAAGGTGCGCAGCAGCCCCAGAGCCCACCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAATTCGCCGGCGTCGAAGGTGCGCAGCAGCCCCAGAGCCCACCGGC  290

seq1  CCCGGCCCTCGCCCTCCATCGCGTGCGTATCGCAAGCAGCCTGGCTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCCTCGCCCTCCATCGCGTGCGTATCGCAAGCAGCCTGGCTCAAC  340

seq1  CGTGTCCGCCCAGGTGCTCAGGTGCATGCCCCGCCCGCTGACGTCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCGCCCAGGTGCTCAGGTGCATGCCCCGCCCGCTGACGTCACTTC  390

seq1  CGACGCTAGCCCCATCCCGCCCCGCCAGTCCCCTGGGCCCACCCCCGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGCTAGCCCCATCCCGCCCCGCCAGTCCCCTGGGCCCACCCCCGACG  440

seq1  CCCTCAAGGGAGCGGCTGCCGGTGAGAGTCTAGCGCCGGGTGTTGCGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGGGAGCGGCTGCCGGTGAGAGTCTAGCGCCGGGTGTTGCGGTC  490

seq1  CCACCAGGGATCGGTGGAATCCCTGCGCTCCTAGGGGCGTGCGCTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGGATCGGTGGAATCCCTGCGCTCCTAGGGGCGTGCGCTGTGGC  540

seq1  TGGCCAACTTCTCACTGTAGTTGTAGTTCGTACCTAGTTCACTTCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACTTCTCACTGTAGTTGTAGTTCGTACCTAGTTCACTTCTCACA  590

seq1  GTGCTGCCACTCTGCAAAACACAACAAAGTATAGTTTCCAACTGAGACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCACTCTGCAAAACACAACAAAGTATAGTTTCCAACTGAGACGT  640

seq1  GGACTTAGATCTGATCGCCAGGCTTGCTCAGGTTTCCCGGGTTATGCGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGATCTGATCGCCAGGCTTGCTCAGGTTTCCCGGGTTATGCGCA  690

seq1  TCTTCGTTTGCAAACGTTAAATCCTACACAATGTTATCGTCTGGGTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTTTGCAAACGTTAAATCCTACACAATGTTATCGTCTGGGTCAGT  740

seq1  TCATGTACCCGATGCCAGTGGAGAAACAGAACATTCTGTGCCCTCCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACCCGATGCCAGTGGAGAAACAGAACATTCTGTGCCCTCCTGGG  790

seq1  AGGCTTTTGTAACTTGCACTCTTAGGCCCTGGCGATCGCTAATCTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTGTAACTTGCACTCTTAGGCCCTGGCGATCGCTAATCTTTTTT  840

seq1  TCTCTCCCTCCGCCCTCCCCCGAAAACATTTGTTTATATTAGAGTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCCGCCCTCCCCCGAAAACATTTGTTTATATTAGAGTTATAT  890

seq1  AGTATCCAACCTTTAGGACTGGTTTTCCACTCCCCTTGCGTCTTGGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCAACCTTTAGGACTGGTTTTCCACTCCCCTTGCGTCTTGGTTTG  940

seq1  TTTTTTGTTTTTGTTTTTGTTTTTTTAC  978
      ||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTGTTTTTGTTTTTTTAC  968