BAC Information

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BAC

Clone NameB6Ng01-014K06
Chromosome16 (Build37)
Map Location 84,454,549 - 84,646,321
singlet/doubletdoublet
Overlap geneLOC547311, LOC100039893
Upstream geneLOC100039572, EG621729, LOC640489, LOC665664
Downstream geneLOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014K06.bB6Ng01-014K06.g
ACCDH849127DH849128
length1,0391,152
definitionDH849127|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K06, 5' end.DH849128|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,645,265 - 84,646,321)(84,454,549 - 84,455,690)
sequence
gaattcaacaatttctgcttaaatggttttaaactttagttgtagtttgc
atggagactcctcatttgaaaccaatcaaacagagtaaattaaaaacatg
gagcaaacattgtgttttttttatttttttatttttttaccctgaagaca
acagataacatagccacacaaattatacttcagacaattggtgtaatttt
tgtgctttaaaggaatatttttctaatcagcagcatttaaaagttgcaca
tgccaatcacataatatttccaagccataataacatgcatttaagtgatg
ttgaaaactaagtgtttctattcagagaagtggcttctgaggaaggctgt
acatcttgaaaaaaaaaaaacaaacaaaaaactttttgagcatccattat
ctttctccttaaattacagtgtctgaaataatatactgaagtgacctttg
caataatatcaatgaaagtaaatggatattttggaaatatcaaaagatag
tgattatttgaaggaaaatgtaaaatattaaagacaagagaactggatgg
gagttggtttaagtcaataaaaaaataagcatgagaaaataaggctaaac
ctttacaactgttttctgaggctatggtcttgttattctggtgttgttgc
tccaaaggaaaaagcttgcttcccatatgaaataggagaaaaatctctcc
tctctttatccccctcctctgcgtatgtatgtgtgtatgtatgcatgtat
atgtgtatttatgcatgtatgaatgcaggcatgaacatggccaaggtgcc
catatgtatggtcagaggataaccttgggtgtttgttctttaccctctac
tgtgtttgagaatgggataaggttccctttttgccccctgcccagcaacg
tacaccagactgtccagcccatgagttttggattctccatttctgtttct
atcttccacagagcattgtattatagcatttcttatggatcagtttatat
gggctctgtgtattgactcagtctttatgctgacagcaa
gaattcctggtgacaactctctccctgatttgccaacaccactgtcccat
cacacaatgcaaaaagttgcaagtctacttccttcccttcttttaaagga
aggcaatacccatcactgtgagcctacctcatctaccaaggccccactct
tcaaaaccatcacaatcagtacttagcgcttcaacataagaatcctgata
aaccacagacattaggtctattcaaaacaagctatttctaagaataagac
tggcagacatcttgagaataagagaattccaggagctaaagaaagagaga
gttctgtgagtaaagtacttgtctacatgcatgagaacattgttcattct
ctagaaagaacccaagtaaaaacaaaaacaaaacaaagaaaacataaaca
tattaaagtgatgcacgcttacaatcccaaagctgtcaatgtagagagag
atgaagccctgggcctcactgtccaggcagcttagcctagtggttgaatt
catggacaataagtgtctcaaaaataatgtggatagtattgaaaaaaaat
acacacatacaattgcacgtaagttcaccgagtacacatgcatacatact
tgcatggtccagaagaaaaatatcaagacatcagcagattttacagaagg
atatttgtaagattgaatagaaaacaatgaaatcggttaaagaagaaaaa
aaaagtttgtagataatgccaaaagaaataatgagcctagcaccttaagt
taaaagattgggatgccagaatttaaaagatttaatagaattcttgactg
catagatacgtaggatatttaaaattagaatgtctacatgggggggggga
gatacctttaagcacaaatagggaaatgttgagaatatgcattagtattt
ttataccaaggatatataaggagtattcagaataataggattttgtgcag
ctagtttgtcttatttcatgataacccagaagtcatcttgaattttttta
tcaagcagaatcataaacaggactgtaccttatgagatgagaacaactgt
gattagttaccttacgtggcatctgaattgactatattactatataatat
tctcattaaaacaaagcgacgcttttttttcttttgcctatgttacctca
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_84645265_84646321
seq2: B6Ng01-014K06.b_41_1079 (reverse)

seq1  TTGCTGTCCAAGCATAAAGACCTGAGTTCAAATACACAGAGCCCATATAA  50
      ||||||||  |||||||||| ||||||   |||||||||||||||||| |
seq2  TTGCTGTC--AGCATAAAGA-CTGAGT--CAATACACAGAGCCCATAT-A  44

seq1  AACTTGGATCCATAAGAAATGCTTATAATTACAATGCTCCTGTGGGAAGA  100
      ||||  |||||||||||||||| ||||| ||||||||| |||| ||||||
seq2  AACT--GATCCATAAGAAATGC-TATAA-TACAATGCT-CTGT-GGAAGA  88

seq1  TTAGAAACAGAAATGGGAGAATTCCCAAAACCTCATGGGCTGGACAGTCT  150
       ||||||||||||| |||||||  |||||| |||||||||||||||||||
seq2  -TAGAAACAGAAAT-GGAGAAT--CCAAAA-CTCATGGGCTGGACAGTCT  133

seq1  GGTGTACGTTGCTGGGCAGGGGGCAAAAAGGGAACCTTATCCCCTTTCTC  200
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  GGTGTACGTTGCTGGGCAGGGGGCAAAAAGGGAACCTTAT-CCCATTCTC  182

seq1  AAACACAGTAGAGGGTAAAGAACAAACACCCAAGGTTATCCTCTGACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGTAGAGGGTAAAGAACAAACACCCAAGGTTATCCTCTGACCAT  232

seq1  ACATATGGGCACCTTGGCCATGTTCATGCCTGCATTCATACATGCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGGCACCTTGGCCATGTTCATGCCTGCATTCATACATGCATAAA  282

seq1  TACACATATACATGCATACATACACACATACATACGCAGAGGAGGGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATACATGCATACATACACACATACATACGCAGAGGAGGGGGAT  332

seq1  AAAGAGAGGAGAGATTTTTCTCCTATTTCATATGGGAAGCAAGCTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGAGAGATTTTTCTCCTATTTCATATGGGAAGCAAGCTTTTTC  382

seq1  CTTTGGAGCAACAACACCAGAATAACAAGACCATAGCCTCAGAAAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGCAACAACACCAGAATAACAAGACCATAGCCTCAGAAAACAGT  432

seq1  TGTAAAGGTTTAGCCTTATTTTCTCATGCTTATTTTTTTATTGACTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGTTTAGCCTTATTTTCTCATGCTTATTTTTTTATTGACTTAAA  482

seq1  CCAACTCCCATCCAGTTCTCTTGTCTTTAATATTTTACATTTTCCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCCATCCAGTTCTCTTGTCTTTAATATTTTACATTTTCCTTCAA  532

seq1  ATAATCACTATCTTTTGATATTTCCAAAATATCCATTTACTTTCATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACTATCTTTTGATATTTCCAAAATATCCATTTACTTTCATTGAT  582

seq1  ATTATTGCAAAGGTCACTTCAGTATATTATTTCAGACACTGTAATTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCAAAGGTCACTTCAGTATATTATTTCAGACACTGTAATTTAAG  632

seq1  GAGAAAGATAATGGATGCTCAAAAAGTTTTTTGTTTGTTTTTTTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATAATGGATGCTCAAAAAGTTTTTTGTTTGTTTTTTTTTTTTC  682

seq1  AAGATGTACAGCCTTCCTCAGAAGCCACTTCTCTGAATAGAAACACTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTACAGCCTTCCTCAGAAGCCACTTCTCTGAATAGAAACACTTAG  732

seq1  TTTTCAACATCACTTAAATGCATGTTATTATGGCTTGGAAATATTATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACATCACTTAAATGCATGTTATTATGGCTTGGAAATATTATGTG  782

seq1  ATTGGCATGTGCAACTTTTAAATGCTGCTGATTAGAAAAATATTCCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATGTGCAACTTTTAAATGCTGCTGATTAGAAAAATATTCCTTTA  832

seq1  AAGCACAAAAATTACACCAATTGTCTGAAGTATAATTTGTGTGGCTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAAATTACACCAATTGTCTGAAGTATAATTTGTGTGGCTATGT  882

seq1  TATCTGTTGTCTTCAGGGTAAAAAAATAAAAAAATAAAAAAAACACAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTGTCTTCAGGGTAAAAAAATAAAAAAATAAAAAAAACACAATG  932

seq1  TTTGCTCCATGTTTTTAATTTACTCTGTTTGATTGGTTTCAAATGAGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCATGTTTTTAATTTACTCTGTTTGATTGGTTTCAAATGAGGAG  982

seq1  TCTCCATGCAAACTACAACTAAAGTTTAAAACCATTTAAGCAGAAATTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGCAAACTACAACTAAAGTTTAAAACCATTTAAGCAGAAATTGT  1032

seq1  TGAATTC  1057
      |||||||
seq2  TGAATTC  1039

seq1: chr16_84454549_84455690
seq2: B6Ng01-014K06.g_66_1217

seq1  GAATTCCTGGTGACAACTCTCTCCCTGATTTGCCAACACCACTGTCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGACAACTCTCTCCCTGATTTGCCAACACCACTGTCCCAT  50

seq1  CACACAATGCAAAAAGTTGCAAGTCTACTTCCTTCCCTTCTTTTAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGCAAAAAGTTGCAAGTCTACTTCCTTCCCTTCTTTTAAAGGA  100

seq1  AGGCAATACCCATCACTGTGAGCCTACCTCATCTACCAAGGCCCCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATACCCATCACTGTGAGCCTACCTCATCTACCAAGGCCCCACTCT  150

seq1  TCAAAACCATCACAATCAGTACTTAGCGCTTCAACATAAGAATCCTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCATCACAATCAGTACTTAGCGCTTCAACATAAGAATCCTGATA  200

seq1  AACCACAGACATTAGGTCTATTCAAAACAAGCTATTTCTAAGAATAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGACATTAGGTCTATTCAAAACAAGCTATTTCTAAGAATAAGAC  250

seq1  TGGCAGACATCTTGAGAATAAGAGAATTCCAGGAGCTAAAGAAAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACATCTTGAGAATAAGAGAATTCCAGGAGCTAAAGAAAGAGAGA  300

seq1  GTTCTGTGAGTAAAGTACTTGTCTACATGCATGAGAACATTGTTCATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGAGTAAAGTACTTGTCTACATGCATGAGAACATTGTTCATTCT  350

seq1  CTAGAAAGAACCCAAGTAAAAACAAAAACAAAACAAAGAAAACATAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGAACCCAAGTAAAAACAAAAACAAAACAAAGAAAACATAAACA  400

seq1  TATTAAAGTGATGCACGCTTACAATCCCAAAGCTGTCAATGTAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTGATGCACGCTTACAATCCCAAAGCTGTCAATGTAGAGAGAG  450

seq1  ATGAAGCCCTGGGCCTCACTGTCCAGGCAGCTTAGCCTAGTGGTTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCCTGGGCCTCACTGTCCAGGCAGCTTAGCCTAGTGGTTGAATT  500

seq1  CATGGACAATAAGTGTCTCAAAAATAATGTGGATAGTATTGAAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAATAAGTGTCTCAAAAATAATGTGGATAGTATTGAAAAAAAAT  550

seq1  ACACACATACAATTGCACGTAAGTTCACCGAGTACACATGCATACATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACAATTGCACGTAAGTTCACCGAGTACACATGCATACATACT  600

seq1  TGCATGGTCCAGAAGAAAAATATCAAGACATCAGCAGATTTTACAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTCCAGAAGAAAAATATCAAGACATCAGCAGATTTTACAGAAGG  650

seq1  ATATTTGTAAGATTGAATAGAAAACAATGAAATCGGTTAAAGAAGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAAGATTGAATAGAAAACAATGAAATCGGTTAAAGAAGAAAAA  700

seq1  AAAAGTTTGTAGATAATGCCAAAAGAAATAATGAGCCTAGCACCTTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTGTAGATAATGCCAAAAGAAATAATGAGCCTAGCACCTTAAGT  750

seq1  TAAAAGATTGGAATGCCAGAATTTAAAAGATTTAATAGAATTCTTGACTG  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTGGGATGCCAGAATTTAAAAGATTTAATAGAATTCTTGACTG  800

seq1  CATAGATACGTAGGATATTTAAAATTAGAATGTCTACAT-GGGGGGGGGA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATAGATACGTAGGATATTTAAAATTAGAATGTCTACATGGGGGGGGGGA  850

seq1  GATACC-TTGAGCACAAATAGGGAAATG-TGAG-ATATGCATTAGTATTT  896
      |||||| || |||||||||||||||||| |||| ||||||||||||||||
seq2  GATACCTTTAAGCACAAATAGGGAAATGTTGAGAATATGCATTAGTATTT  900

seq1  TTATACC-AGGATA-AT-AGGAGTATTCAGAATAATAGGA-TTTGTGCAG  942
      ||||||| |||||| || |||||||||||||||||||||| |||||||||
seq2  TTATACCAAGGATATATAAGGAGTATTCAGAATAATAGGATTTTGTGCAG  950

seq1  CTAG-TTGTCTTATATCATGATAAACCCAG-AGTCATCTTGAA-ATTTTT  989
      |||| ||||||||| ||||||| ||||||| ||||||||||||  |||||
seq2  CTAGTTTGTCTTATTTCATGAT-AACCCAGAAGTCATCTTGAATTTTTTT  999

seq1  ATCAAGCAG-ATCAT-AACAGGACTGTACTTTATGAAGATGAAGACAACT  1037
      ||||||||| ||||| ||||||||||||| ||||| ||||||  ||||||
seq2  ATCAAGCAGAATCATAAACAGGACTGTACCTTATG-AGATGAGAACAACT  1048

seq1  GTGATTAGTTACATTTACGT-GCATCT-AAATGACTATATTTACTATTAA  1085
      ||||||||||||  |||||| |||||| || |||||||| |||||| || 
seq2  GTGATTAGTTAC-CTTACGTGGCATCTGAATTGACTATA-TTACTA-TAT  1095

seq1  TATATTCTCATAAAAACAAAGCAACG-TCTTTTTTCTTTTGCCTAGTGTT  1134
       |||||||||| |||||||||| ||| | |||||||||||||||| ||||
seq2  AATATTCTCATTAAAACAAAGCGACGCTTTTTTTTCTTTTGCCTA-TGTT  1144

seq1  AACTCAGA  1142
      | ||||||
seq2  ACCTCAGA  1152