BAC Information

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BAC

Clone NameB6Ng01-014N01
Chromosome16 (Build37)
Map Location 44,450,729 - 44,451,253
singlet/doubletsinglet
Overlap geneWdr52
Upstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52
Downstream geneBoc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014N01.bB6Ng01-014N01.g
ACCDH849251DH849252
length5201,154
definitionDH849251|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N01, 5' end.DH849252|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tcattttaagtcttaattctttaaattactcgttctcaagtaggtaaaca
tgctgatcttgttttagtgatttacttcctagtagagatgtaggtaagtt
ttataagacttgacaaagtgtgtttggtccctttttttaaaaaacaaaac
aaaacaaaacaaaccccactatatttcgtgtggagtaatgcttagtgtgg
ttcgcagcctcattgcacacagttgctgttgtccttttaggcaccgggag
atacttctaagatagagtgtgtaatgagcaagccataggtgtgtgcagtg
cctgtgcaggtatgctctggctcaagtaagtagagaaaaaaggcaaccac
agaagtatgtcatggcataccatgggattctgatgtaaacagtaaacagt
aaacagtggcaaagatgcagaaggagaacaggaggacttatagtttggac
atagatgggcagccaaggtgaatcaaaaaaaaaaaaatccaaatttccat
ctaggaaaggaactagtcaa
gaattcttaaccgcacataaccttttagttttattcctggttaaataaat
atattttccactccttaaaagagtagttcttggcctgagcatcggcagga
gacatcttggttccaggactcttccaaaagtagtctgcacagatgagagt
gtggactacagaagctaacagcttctgggacaggcagacagaagattgat
atgtttatcaagaaacagagcttctgaggcagcccacattttgggctcca
gacatcagggcaccttcctagccagtggataggtgtctgtcctgcacggg
aaggctttgcctgagcatcgatgggagacatcttggttccaggactctgc
cgagagtagtctgcacaggtgagagtgtggactacagaagctaacaacag
cttctgggacaggcgggaacaacagagcttctgaggcggcccccttatcg
ggctccagacatctaggcaccttccctgccaaaggataggtgtccgcccc
gcctggaagggctttgcaggagcacctgggggagccattttggttcccag
gttccctctgagactagtgtgtggaggtgagagtgtggactacagaagct
aacagcttctgggacaggtcctgttttgggccttcatcttcggccaggag
ggaggtccgaacgccagatatctgtgcaccttctctgtaagaggagagct
tgcctgcagagagtgctctgaccactgaaactcagaggagagagctagtc
tcccagatctgctgatagaggctaacagaatcatgagaggaacaatctct
aaccagagacaactataacaactaacctacagagattaccagatgggtga
aaggtaaacataagaatcttactaacagaaaccaagaccactcaccatca
tcagaacccagcactcccaccttgcccagttcagggcaccccaccacccg
aagacccagatttaaaagcatatctcatgatgatggtagaggacttcaga
aggacttaatactcccttaaataaatcagagagacactttctaacaggta
gaggaccttaagaggaggccaaaatccccttgtggaatgccgaaaaactg
accaacagggtgagtgaattgaataactcctccacttacatctctcatga
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44450729_44451253
seq2: B6Ng01-014N01.b_35_560

seq1  GAATTCTCATTTTAAGTCTTAATTCTTTAAA-GACTCGTTCTCAAGTAGG  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCTCATTTTAAGTCTTAATTCTTTAAATTACTCGTTCTCAAGTAGG  50

seq1  TAAACATGCTGATCTTGTTTTAGTGATTTACTTCCTAGTAGAGATGTAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGCTGATCTTGTTTTAGTGATTTACTTCCTAGTAGAGATGTAGG  100

seq1  TAAGTTTTATAAGACTTGACAAAGTGTGTTTGGTCCCTTTTTTTAAAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTATAAGACTTGACAAAGTGTGTTTGGTCCCTTTTTTTAAAAAA  150

seq1  CAAAACAAAACAAAACAAACCCCACTATATTTCGTGTGGAGTAATGCTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAACCCCACTATATTTCGTGTGGAGTAATGCTTA  200

seq1  GTGTGGTTCGCAGCCTCATTGCACACAGTTGCTGTTGTCCTTTTAGGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTCGCAGCCTCATTGCACACAGTTGCTGTTGTCCTTTTAGGCAC  250

seq1  CGGGAGATACTTCTAAGATAGAGTGTGTAATGAGCAAGCCATAGGTGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGATACTTCTAAGATAGAGTGTGTAATGAGCAAGCCATAGGTGTGT  300

seq1  GCAGTGCCTGTGCAGGTATGCTCTGGCTCAAGTAAGTAGAGAAAAAAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTGTGCAGGTATGCTCTGGCTCAAGTAAGTAGAGAAAAAAGGC  350

seq1  AACCACAGAAGTATGTCATGGCATACCATGGGATTCTGATGTAAACAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAAGTATGTCATGGCATACCATGGGATTCTGATGTAAACAGTA  400

seq1  AACAGTAAACAGTGGCAAAGATGCAGAAGGAGAACAGGAGGACTTATAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAACAGTGGCAAAGATGCAGAAGGAGAACAGGAGGACTTATAGT  450

seq1  TTGGACATAGATGGGCAGCCAAGGTGAATCAAAAAAAAAAAAATCCAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATAGATGGGCAGCCAAGGTGAATCAAAAAAAAAAAAATCCAAAT  500

seq1  TTCCATCTAGGAAAGGAACTAGTCAA  525
      ||||||||||||||||||||||||||
seq2  TTCCATCTAGGAAAGGAACTAGTCAA  526