BAC Information

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BAC

Clone NameB6Ng01-015L04
Chromosome16 (Build37)
Map Location 51,070,664 - 51,223,564
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L04.bB6Ng01-015L04.g
ACCDH849885DH849886
length1,1711,123
definitionDH849885|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L04, 5' end.DH849886|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,070,664 - 51,071,850)(51,222,430 - 51,223,564)
sequence
gaattcttttgtttcatttaactttttcccttttccagcttcactcattt
gagactcaagcatctcagactgtactgaatacatttaggatgactcttcc
ctctgtcttcagttaaagctctcttggaagcattctcaggacacacccaa
atgcatatctccaggtgagtccaaattcagtgatattgattacacagtct
tatcaagttgactgatttttattgaacactaacgtttctccagtttttac
tgctatgtcatttgtataaattaggattcacttttcttgcccttaatggg
aattatacttagcccataaattataatactgaagaataaatgaagtatgc
tatattaactattagataacttactaacagcttctttgaaaactcaataa
gagatttttaatttgcttttcttttctcttttgcatattactgcacagca
atctgggtttggatacgcggagagtgattctatactgcagatgccatgct
gatgttttgtggtctcagccatttaatgtaagtatctaaattgttaggtc
atcctttgcacaagtaattttattttattttttaatttttgtgttttcca
caagaaaattttgaattaaagtaacatttgatacaaaaatagtttcttgt
gtagcaaatactttaacttactgaattgtcttgctggtacagtttttatt
ttactaagtgttaaaataaaatctctcaagaaaatagaactttgacatca
agatgcagttatgttcctctcaaaggtgcattgcaattattctgtttctc
tttcactcatttagaaaaaaatattgaaatttaaaattttaatccaacaa
taagtgtaataatgtataatattcagactacttgtgaatcagtaaaaggg
aatattttcctaaccatgtgatatttaagctacagtaaatattttctatc
ctgtatatgtgtggccctgagtttgatttcataccccacataaagggaga
tacagagaccccacatctgtagtccacagacttcctatagcagatgaaag
ccaaagcaggaaactggctcacctgaaatgctgtctaagggtagagccaa
attgatctgcccttataaccattgcaattggaccaggaatgaaacatcct
ctgacttccaattatctgtga
gaattcaagagaaaattaggacagaaagacaaattgtgacatttcctagt
atctaaatatgagaacatcctccactaccatgccacacgtgagcaaacaa
ttcttaagctccattactttatattctcaccgtatctcaggttgtgatgt
attacattgcttataagctgatgaaaaaaatgagttttgacttcccagca
ctgtataacacaaaggtaaacttggatttgcttctaatagcctaaggaag
aaaagaaacacacatgcaaagagtcatgtacacagttgtccttggaggaa
atgagagtaataaatataaccacagcaaagagagaacagaaatcacagtg
gggagaaaaataaaataaatgttttgcctctttccttttcaaatcattac
tttgcagggtgggggcacgtgcacctgtggaggtcagaggacatctttct
gaactgtgttctctcttctacctttatgagcatgctggcatttaaactca
ggtttcaggcttgtttattgcaagtgcctttactgggtgggtcatatctc
tggctctacctcttcatttcttaactgttaatgaatatttgcatacctga
ttccttgcttatatgatgtcaaactttgattatgatatcatacgttctca
gtctttagcttaaattttcatttttagtgaaattagagtagttcatttaa
ttactcatgtatatgataactatcattaacacaaattgaaaatcattaat
ccaactttcctctacttatcataaatacatgaaattgattaattaatatg
aagggaaaatgatcacagtctttatatctgagagacccagactttccctt
ttgatatggctgctattgctgtttttacatatggtttgattttccaagta
gggacagataataatttgctaaatttataacctgtactattcccaatttt
ggcttattctaaatattcccatactttcagtttgatctttctgatagctt
cagtggtgggaaatcagaaattcactgtaatgttaataaatgaaacctta
tgacttaaagtagcatcttggttctggtagttccgtcataagcagatgca
gtagaattatttttgtcatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_51070664_51071850
seq2: B6Ng01-015L04.b_44_1214

seq1  GAATTCTTTTGTTTCATTTAACTTTTTCCCTTTTCCAGCTTCACTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTTCATTTAACTTTTTCCCTTTTCCAGCTTCACTCATTT  50

seq1  GAGACTCAAGCATCTCAGACTGTACTGAATACATTTAGGATGACTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAAGCATCTCAGACTGTACTGAATACATTTAGGATGACTCTTCC  100

seq1  CTCTGTCTTCAGTTAAAGCTCTCTTGGAAGCATTCTCAGGACACACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCAGTTAAAGCTCTCTTGGAAGCATTCTCAGGACACACCCAA  150

seq1  ATGCATATCTCCAGGTGAGTCCAAATTCAGTGATATTGATTACACAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATCTCCAGGTGAGTCCAAATTCAGTGATATTGATTACACAGTCT  200

seq1  TATCAAGTTGACTGATTTTTATTGAACACTAACGTTTCTCCAGTTTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTGACTGATTTTTATTGAACACTAACGTTTCTCCAGTTTTTAC  250

seq1  TGCTATGTCATTTGTATAAATTAGGATTCACTTTTCTTGCCCTTAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTCATTTGTATAAATTAGGATTCACTTTTCTTGCCCTTAATGGG  300

seq1  AATTATACTTAGCCCATAAATTATAATACTGAAGAATAAATGAAGTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTTAGCCCATAAATTATAATACTGAAGAATAAATGAAGTATGC  350

seq1  TATATTAACTATTAGATAACTTACTAACAGCTTCTTTGAAAACTCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAACTATTAGATAACTTACTAACAGCTTCTTTGAAAACTCAATAA  400

seq1  GAGATTTTTAATTTGCTTTTCTTTTCTCTTTTGCATATTACTGCACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTAATTTGCTTTTCTTTTCTCTTTTGCATATTACTGCACAGCA  450

seq1  ATCTGGGTTTGGATACGCGGAGAGTGATTCTATACTGCAGATGCCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTTGGATACGCGGAGAGTGATTCTATACTGCAGATGCCATGCT  500

seq1  GATGTTTTGTGGTCTCAGCCATTTAATGTAAGTATCTAAATTGTTAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGTGGTCTCAGCCATTTAATGTAAGTATCTAAATTGTTAGGTC  550

seq1  ATCCTTTGCACAAGTAATTTTATTTTATTTTTTAATTTTTGTGTTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGCACAAGTAATTTTATTTTATTTTTTAATTTTTGTGTTTTCCA  600

seq1  CAAGAAAATTTTGAATTAAAGTAACATTTGATACAAAAATAGTTTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATTTTGAATTAAAGTAACATTTGATACAAAAATAGTTTCTTGT  650

seq1  GTAGCAAATACTTTAACTTACTGAATTGTCTTGCTGGTACAGTTTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAATACTTTAACTTACTGAATTGTCTTGCTGGTACAGTTTTTATT  700

seq1  TTACTAAGTGTTAAAATAAAATCTCTCAAGAAAATAGAACTTTGACATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGTGTTAAAATAAAATCTCTCAAGAAAATAGAACTTTGACATCA  750

seq1  AGATGCAGTTATGTTCCTCTCAAAGGTGCATTGCAATTATTCTGTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTTATGTTCCTCTCAAAGGTGCATTGCAATTATTCTGTTTCTC  800

seq1  TTTCACTCATTTAGAAAAAAAATATTGAAATTTAAAATTTTAATCCAACA  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTCACTCATTTAG-AAAAAAATATTGAAATTTAAAATTTTAATCCAACA  849

seq1  ATAAGTGTAATAATGTATAATATTCAGACTACTTGTGAATCAGTAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTAATAATGTATAATATTCAGACTACTTGTGAATCAGTAAAAGG  899

seq1  GAATATTTTCCTAACCATGTGATATTTAAGCTACAGTAAAATATTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  GAATATTTTCCTAACCATGTGATATTTAAGCTACAGTAAATATTTTCTAT  949

seq1  CCTGTATATGTGTGGCCCTGAGTTTGATTTTCATAACTCACATAAAGGGA  1000
      ||||||||||||||||||||||||||| ||||||| | ||||||||||||
seq2  CCTGTATATGTGTGGCCCTGAGTTTGA-TTTCATACCCCACATAAAGGGA  998

seq1  GGATACAGAGA-CTCACATCTGTAGT-CACAGGACTCCTATAGCAGATGG  1048
       |||||||||| | |||||||||||| |||||   ||||||||||||| |
seq2  -GATACAGAGACCCCACATCTGTAGTCCACAGACTTCCTATAGCAGAT-G  1046

seq1  AAAGCAGAGACAGGAAAACTGGCTCACCTGGAGTATGCTGTCTAGGGGTA  1098
      |||||  |  |||| ||||||||||||||| |  |||||||||| |||||
seq2  AAAGCCAAAGCAGG-AAACTGGCTCACCTGAA--ATGCTGTCTAAGGGTA  1093

seq1  GAAGCAAAATTGACTCTG-CCTTATAAACAAAATGGAAAATGGGACCCAG  1147
      | ||| ||||||| |||| |||||||| |   || | || |||   ||||
seq2  G-AGCCAAATTGA-TCTGCCCTTATAACC---ATTGCAATTGG--ACCAG  1136

seq1  CGAATGAAAATCATCCTCTGATCTTCCCAATTTACTGTGA  1187
       ||||||||  |||||||||| ||| ||||||  ||||||
seq2  -GAATGAAA--CATCCTCTGA-CTT-CCAATTATCTGTGA  1171

seq1: chr16_51222430_51223564
seq2: B6Ng01-015L04.g_68_1190 (reverse)

seq1  CCCCATGAC-AAAATAA-TCTACTGCATCTTGCCTCATGAGCGACACTAA  48
      ||||||||| ||||||| ||||||||||||   || |||| ||  |||| 
seq2  CCCCATGACAAAAATAATTCTACTGCATCT--GCTTATGA-CGGAACTAC  47

seq1  CAGAAACAAGAATGCTACTTTTAGGTCATAAAGGTGTCATTTA-TAACAT  97
      ||||| |||| ||||||| |||| ||||| ||||| ||||||| ||||||
seq2  CAGAACCAAG-ATGCTAC-TTTAAGTCAT-AAGGTTTCATTTATTAACAT  94

seq1  TAACAGTGGAATATCTGAATTTCCCACCACTGAAGCTATTCAAGAAAAGA  147
      | ||||| |||| |||| |||||||||||||||||||| |||   |||||
seq2  T-ACAGT-GAATTTCTG-ATTTCCCACCACTGAAGCTA-TCA--GAAAGA  138

seq1  TCAAACTGAAAGTATGGGGAATTATTTAGAATAAGCCAAAAATTGGGAAT  197
      ||||||||||||||||||  | ||||||||||||||| ||||||||||||
seq2  TCAAACTGAAAGTATGGG--AATATTTAGAATAAGCC-AAAATTGGGAAT  185

seq1  AGTACAGGTTATAAATTTAGCAAATTATTTATCTGTCCCTACTTGGAAAA  247
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTACAGGTTATAAATTTAGCAAATTA-TTATCTGTCCCTACTTGGAAAA  234

seq1  TCAAACCATATGTAAAAACAGCAATAGCAGCCATATCAAAAGGGAAAGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATATGTAAAAACAGCAATAGCAGCCATATCAAAAGGGAAAGTC  284

seq1  TGGGTCTCTCAGATATAAAGACTGTGATCATTTT-CCTTCATATTAATTA  346
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGGTCTCTCAGATATAAAGACTGTGATCATTTTCCCTTCATATTAATTA  334

seq1  ATCAATTTCATGTATTTATGATAAGTAGAGGAAAGTTGGATTAATGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCATGTATTTATGATAAGTAGAGGAAAGTTGGATTAATGATTT  384

seq1  TCAATTTGTGTTAATGATAGTTATCATATACATGAGTAATTAAATGAACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGTGTTAATGATAGTTATCATATACATGAGTAATTAAATGAACT  434

seq1  ACTCTAATTTCACTAAAAATGAAAATTTAAGCTAAAGACTGAGAACGTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATTTCACTAAAAATGAAAATTTAAGCTAAAGACTGAGAACGTAT  484

seq1  GATATCATAATCAAAGTTTGACATCATATAAGCAAGGAATCAGGTATGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATAATCAAAGTTTGACATCATATAAGCAAGGAATCAGGTATGCA  534

seq1  AATATTCATTAACAGTTAAGAAATGAAGAGGTAGAGCCAGAGATATGACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATTAACAGTTAAGAAATGAAGAGGTAGAGCCAGAGATATGACC  584

seq1  CACCCAGTAAAGGCACTTGCAATAAACAAGCCTGAAACCTGAGTTTAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTAAAGGCACTTGCAATAAACAAGCCTGAAACCTGAGTTTAAAT  634

seq1  GCCAGCATGCTCATAAAGGTAGAAGAGAGAACACAGTTCAGAAAGATGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATGCTCATAAAGGTAGAAGAGAGAACACAGTTCAGAAAGATGTC  684

seq1  CTCTGACCTCCACAGGTGCACGTGCCCCCACCCTGCAAAGTAATGATTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTCCACAGGTGCACGTGCCCCCACCCTGCAAAGTAATGATTTG  734

seq1  AAAAGGAAAGAGGCAAAACATTTATTTTATTTTTCTCCCCACTGTGATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGAGGCAAAACATTTATTTTATTTTTCTCCCCACTGTGATTT  784

seq1  CTGTTCTCTCTTTGCTGTGGTTATATTTATTACTCTCATTTCCTCCAAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTCTTTGCTGTGGTTATATTTATTACTCTCATTTCCTCCAAGG  834

seq1  ACAACTGTGTACATGACTCTTTGCATGTGTGTTTCTTTTCTTCCTTAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGTACATGACTCTTTGCATGTGTGTTTCTTTTCTTCCTTAGGC  884

seq1  TATTAGAAGCAAATCCAAGTTTACCTTTGTGTTATACAGTGCTGGGAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAAGCAAATCCAAGTTTACCTTTGTGTTATACAGTGCTGGGAAGT  934

seq1  CAAAACTCATTTTTTTCATCAGCTTATAAGCAATGTAATACATCACAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCATTTTTTTCATCAGCTTATAAGCAATGTAATACATCACAACC  984

seq1  TGAGATACGGTGAGAATATAAAGTAATGGAGCTTAAGAATTGTTTGCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACGGTGAGAATATAAAGTAATGGAGCTTAAGAATTGTTTGCTCA  1034

seq1  CGTGTGGCATGGTAGTGGAGGATGTTCTCATATTTAGATACTAGGAAATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGCATGGTAGTGGAGGATGTTCTCATATTTAGATACTAGGAAATG  1084

seq1  TCACAATTTGTCTTTCTGTCCTAATTTTCTCTTGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTTGTCTTTCTGTCCTAATTTTCTCTTGAATTC  1123