BAC Information

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BAC

Clone NameB6Ng01-015P01
Chromosome16 (Build37)
Map Location 72,538,678 - 72,675,730
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P01.bB6Ng01-015P01.g
ACCDH850060DH850061
length392369
definitionDH850060|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P01, 5' end.DH850061|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,538,678 - 72,539,075)(72,675,357 - 72,675,730)
sequence
cagcagactggcggccactttcacacattaagattcttcatgtatgggaa
gaaatgttataacatttttttatgaagggaaaattagtacctttttattc
ctttatatttattaaatgtggttcttatctagaagcccataagtattaat
ttggaaattaagtggatgtcaaatcttatctggcccatacagcttgcttc
agtcacttgacctctggattccaggggatgttccttggaacttggacaca
gcctttgctatttcatctttaggatacactctttttctttcttcctttct
ctctttctttctttctctctctttttttttgaccactcctgatatccaaa
tctatattaaattatttatggtaggggttgtattattaaata
ttttctgcaggaaagaataaggtttcagaaacacactacaggcttctgat
cctgtgctgataatgctgctgtttttctagactgcagactcactcggatt
tgaccagccaggaccacattttgatttggttttggattgattgattgatt
gattgattgattgatttttgactggggaatgtcactgttcttgcttgttt
agagttttttttttttttttttttttttttttgctttttgttttttgtat
ttttagtttttaggttttggtttttggtttttgttttcttttgtcttcat
ttagttttagtttcagacagggtttctctgggtaggcccagctggcttga
aactcactctgtaaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72538678_72539075
seq2: B6Ng01-015P01.b_46_443

seq1  GAATTCCAGCAGACTGGCGGCCACTTTCACACATTAAGATTCTTCATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGACTGGCGGCCACTTTCACACATTAAGATTCTTCATGTA  50

seq1  TGGGAAGAAATGTTATAACA-TTTCTTATGAAGGGAAAATTAGTACCTTT  99
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TGGGAAGAAATGTTATAACATTTTTTTATGAAGGGAAAATTAGTACCTTT  100

seq1  TTATTCCTTTATATTTATTAAATGTGGTTCTTATCTAGAAGCCCATAAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTTATATTTATTAAATGTGGTTCTTATCTAGAAGCCCATAAGT  150

seq1  ATTAATTTGGAAATTAAGTGGATGTCAAATCTTATCTGGCCCATACAGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGGAAATTAAGTGGATGTCAAATCTTATCTGGCCCATACAGCT  200

seq1  TGCTTCAGTCACTTGACCTCTGGATTCCAGGGGATGTTCCTTGGAACTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGTCACTTGACCTCTGGATTCCAGGGGATGTTCCTTGGAACTTG  250

seq1  GACACAGCCATTGCTATTTCATCTTTAGGATACACTCTTTTTCTTTCTTC  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCCTTTGCTATTTCATCTTTAGGATACACTCTTTTTCTTTCTTC  300

seq1  CTTTCTCTCTTTCTTTCTTTCTCTCTCTTTTTTTTTGACCACTCCTGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTTTCTTTCTTTCTCTCTCTTTTTTTTTGACCACTCCTGATA  350

seq1  ACCAAATCTATAATAAATTATTTATGGTAGGGGTTGATATTATTAAATA  398
       ||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TCCAAATCTATATTAAATTATTTATGGTAGGGGTTG-TATTATTAAATA  398

seq1: chr16_72675357_72675730
seq2: B6Ng01-015P01.g_69_442 (reverse)

seq1  TGGTCTACAGAGTGAGTTTCAAGACAGCTGGGCCTACCCAGAGAAACCCT  50
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGTTTACAGAGTGAGTTTCAAGCCAGCTGGGCCTACCCAGAGAAACCCT  50

seq1  GTCTGAAACTAAAACTAAATGAAGACAAAAGAAAACAAAAACCAAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAACTAAAACTAAATGAAGACAAAAGAAAACAAAAACCAAAAACC  100

seq1  AAAACCTAAAAACTAAAAATACAAAAAACAAAAAGCAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAAAAACTAAAAATACAAAAAACAAAAAGCAAAAAAAAAAAAAA  150

seq1  AAAAAAAAAAAAAACTCTAAACAAGCAAGAACAGTGACATTCCCCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACTCTAAACAAGCAAGAACAGTGACATTCCCCAGTCA  200

seq1  AAAATCAATCAATCAATCAATCAATCAATCAATCCAAAACCAAATCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATCAATCAATCAATCAATCAATCAATCCAAAACCAAATCAAAA  250

seq1  TGTGGTCCTGGCTGGTCAAATCCGAGTGAGTCTGCAGTCTAGAAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCTGGCTGGTCAAATCCGAGTGAGTCTGCAGTCTAGAAAAACAG  300

seq1  CAGCATTATCAGCACAGGATCAGAAGCCTGTAGTGTGTTTCTGAAACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTATCAGCACAGGATCAGAAGCCTGTAGTGTGTTTCTGAAACCTT  350

seq1  ATTCTTTCCTGCAGAAAAGAATTC  374
      ||||||||||||||||||||||||
seq2  ATTCTTTCCTGCAGAAAAGAATTC  374