BAC Information

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BAC

Clone NameB6Ng01-016D21
Chromosome16 (Build37)
Map Location 26,707,932 - 26,861,292
singlet/doubletdoublet
Overlap geneIl1rap
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016D21.bB6Ng01-016D21.g
ACCDH850264DH850265
length9981,096
definitionDH850264|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D21, 5' end.DH850265|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,707,932 - 26,708,641)(26,860,199 - 26,861,292)
sequence
gaattctcccattctatctctgatacgtccataaagcctctctgtgatat
gcaccatggaaaataagtagataacgaggaaacagtcaaagctcagatgg
tggaagtcagtctctgcagtgtttgtcatagaactgtggacttggcaaat
actcgaaccaaataacacttgtcattatttagactggcccatttcttttt
ctttctttcttttattttttttttgatattttctttatatacatttcaaa
tttcaaatgctatccctataccctccgcctgccctgctcccctacccacc
cactcccacttcttgaccctggcattcccctgtattggggcatataaagt
ttgcaataccaaggagcctctcttcacagtgatggctgactaggtcatgt
tctactacatatgcagctagagacatgagctccggaggtactggttagtt
catattgatgttccacctatagggttgcagaccccttcagctccttgggt
gctttctctagtttctccattgggggccctctgttccatcttatagatga
ctgtgagcatccacttctgtatttgccaggcactggcatagcctcatatg
agacagctataacagggtcccttcagcaacatcttgctggcatatgcaat
agtgtctgggtttggaggctgattataagatggatccctaggtggggtag
tctttggatagtccacccttttgtcttagctccaaactttgtctctgtaa
ctcctttcatgggtattttgttccctattctaaggaggaacgaaagatcc
acccattggtcttccctcttcttgattttcttatgttttgcaaattgtat
cttggttgttctatgtttctggactaatatccacttatcagtgagtgcat
atctaatgacttcttttgtaattgggttacctcactaagatgatagcctc
cagatacatccatttgtccaagaatttcataaattcattgttttaata
gaattcttttaaattgtgccactccctggtgactaagcattcatatatat
gagcctatgggaacattcttatccaaagcaccacagacattttctcaaaa
acaatttgaaatgtaataacatattccactttgttaagatcaacataagc
taataaaagtaaattctttgtaaagttattgtttattgcatatatgctaa
catttgagtgcatttgttaatgcatgcactcatttccaatgaactgtgga
ttaataagttaatgcattcttacaatgttttaaatccttttctacttgac
atacagttagcagttactgagtgaatgacagaccattcactaaatcataa
gtgccaagaaaatatgataataacaaattgaaagaagcagatggaggtag
gaggagaatgttcagacaggcataccttcccaatgttctacaccaggctg
agcaaactgtcaacattcaataaaagttaaacaacagttagaataatggg
tgccatctgcatgccaaatttagagtagtagaaacctacaggactgacag
tctaaaaggcttgtctgactatgactagcagttctaagttttttttaaat
ctcaattaatagcacaaatattcttttagtcactcagcaatgaccctttt
atcttgctctctacgttctccattatcattcgaagttctttttagaattc
tacctccctctatttaatcatttatcaaactacatgtaatgtttccttcc
atttttttattaaaactccaactatagtcataacactcaaagtatttgcc
atgatcaaaagtgtcaaattattttgtaaagacttattttttttttagct
tagaatataaagctttccaatgctgcaactcacgttgctcatgtaatata
tcacctcatgagaaatttatcttttatttattaattattgtcacatttct
aagcaaaagaaagataaaatctctcatttctttgattgtttcccatccag
gaacagagtctaaaatagtcttggatttttttatagaccttctttgaatc
agaaataatagtagctatttacgtccatagtttcaaattaaagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26707932_26708641
seq2: B6Ng01-016D21.b_41_750

seq1  GAATTCTCCCATTCTATCTCTGATACGTCCATAAAGCCTCTCTGTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCATTCTATCTCTGATACGTCCATAAAGCCTCTCTGTGATAT  50

seq1  GCACCATGGAAAATAAGTAGATAACGAGGAAACAGTCAAAGCTCAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGGAAAATAAGTAGATAACGAGGAAACAGTCAAAGCTCAGATGG  100

seq1  TGGAAGTCAGTCTCTGCAGTGTTTGTCATAGAACTGTGGACTTGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAGTCTCTGCAGTGTTTGTCATAGAACTGTGGACTTGGCAAAT  150

seq1  ACTCGAACCAAATAACACTTGTCATTATTTAGACTGGCCCATTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAACCAAATAACACTTGTCATTATTTAGACTGGCCCATTTCTTTTT  200

seq1  CTTTCTTTCTTTTATTTTTTTTTTGATATTTTCTTTATATACATTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTTATTTTTTTTTTGATATTTTCTTTATATACATTTCAAA  250

seq1  TTTCAAATGCTATCCCTATACCCTCCGCCTGCCCTGCTCCCCTACCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGCTATCCCTATACCCTCCGCCTGCCCTGCTCCCCTACCCACC  300

seq1  CACTCCCACTTCTTGACCCTGGCATTCCCCTGTATTGGGGCATATAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACTTCTTGACCCTGGCATTCCCCTGTATTGGGGCATATAAAGT  350

seq1  TTGCAATACCAAGGAGCCTCTCTTCACAGTGATGGCTGACTAGGTCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATACCAAGGAGCCTCTCTTCACAGTGATGGCTGACTAGGTCATGT  400

seq1  TCTACTACATATGCAGCTAGAGACATGAGCTCCGGAGGTACTGGTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACATATGCAGCTAGAGACATGAGCTCCGGAGGTACTGGTTAGTT  450

seq1  CATATTGATGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGATGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGT  500

seq1  GCTTTCTCTAGTTTCTCCATTGGGGGCCCTCTGTTCCATCTTATAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTAGTTTCTCCATTGGGGGCCCTCTGTTCCATCTTATAGATGA  550

seq1  CTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATATG  600

seq1  AGACAGCTATAACAGGGTCCCTTCAGCAACATCTTGCTGGCATATGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTATAACAGGGTCCCTTCAGCAACATCTTGCTGGCATATGCAAT  650

seq1  AGTGTCTGGGTTTGGAGGCTGATTATAAGATGGATCCCTAGGTGGGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGGTTTGGAGGCTGATTATAAGATGGATCCCTAGGTGGGGTAG  700

seq1  TCTTTGGATA  710
      ||||||||||
seq2  TCTTTGGATA  710

seq1: chr16_26860199_26861292
seq2: B6Ng01-016D21.g_68_1163 (reverse)

seq1  TAACCTTAATTTGAAACTATGGACCGTAAATAGCTACTAATTATTTCTGA  50
      |||| |||||||||||||||||| |||||||||||||| |||||||||||
seq2  TAACTTTAATTTGAAACTATGGA-CGTAAATAGCTACT-ATTATTTCTGA  48

seq1  -TCAAAGAA-GTCTATAAAAAAATCCAAGACTTATTTAGACTCTGTTCCT  98
       |||||||| ||||||||||||||||||||||  ||||||||||||||||
seq2  TTCAAAGAAGGTCTATAAAAAAATCCAAGACTATTTTAGACTCTGTTCCT  98

seq1  GGATGGGAAACAATCAAAGAAATGAGAGATGTTATCTTTC-TTTGCTTAG  147
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GGATGGGAAACAATCAAAGAAATGAGAGATTTTATCTTTCTTTTGCTTAG  148

seq1  AAATGTGACAATAATTAATAAATAAAAGATAAATTTCTCATGAGGTGATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGACAATAATTAATAAATAAAAGATAAATTTCTCATGAGGTGATA  198

seq1  TATTACATGAGCAACGTGAGTTGCAGCATTGGAAAGCTTTATATTCTAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATGAGCAACGTGAGTTGCAGCATTGGAAAGCTTTATATTCTAAG  248

seq1  CT-AAAAAAAAATAAGTCTTTACAAAATAATTTGACACTTTTGATCATGG  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAAAATAAGTCTTTACAAAATAATTTGACACTTTTGATCATGG  298

seq1  CAAATACTTTGAGTGTTATGACTATAGTTGGAGTTTTAATAAAAAAATGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTTGAGTGTTATGACTATAGTTGGAGTTTTAATAAAAAAATGG  348

seq1  AAGGAAACATTACATGTAGTTTGATAAATGATTAAATAGAGGGAGGTAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACATTACATGTAGTTTGATAAATGATTAAATAGAGGGAGGTAGA  398

seq1  ATTCTAAAAAGAACTTCGAATGATAATGGAGAACGTAGAGAGCAAGATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAAAGAACTTCGAATGATAATGGAGAACGTAGAGAGCAAGATAA  448

seq1  AAGGGTCATTGCTGAGTGACTAAAAGAATATTTGTGCTATTAATTGAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCATTGCTGAGTGACTAAAAGAATATTTGTGCTATTAATTGAGAT  498

seq1  TTAAAAAAAACTTAGAACTGCTAGTCATAGTCAGACAAGCCTTTTAGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAACTTAGAACTGCTAGTCATAGTCAGACAAGCCTTTTAGACT  548

seq1  GTCAGTCCTGTAGGTTTCTACTACTCTAAATTTGGCATGCAGATGGCACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCTGTAGGTTTCTACTACTCTAAATTTGGCATGCAGATGGCACC  598

seq1  CATTATTCTAACTGTTGTTTAACTTTTATTGAATGTTGACAGTTTGCTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTAACTGTTGTTTAACTTTTATTGAATGTTGACAGTTTGCTCA  648

seq1  GCCTGGTGTAGAACATTGGGAAGGTATGCCTGTCTGAACATTCTCCTCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGTAGAACATTGGGAAGGTATGCCTGTCTGAACATTCTCCTCCT  698

seq1  ACCTCCATCTGCTTCTTTCAATTTGTTATTATCATATTTTCTTGGCACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATCTGCTTCTTTCAATTTGTTATTATCATATTTTCTTGGCACTT  748

seq1  ATGATTTAGTGAATGGTCTGTCATTCACTCAGTAACTGCTAACTGTATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAGTGAATGGTCTGTCATTCACTCAGTAACTGCTAACTGTATGT  798

seq1  CAAGTAGAAAAGGATTTAAAACATTGTAAGAATGCATTAACTTATTAATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGAAAAGGATTTAAAACATTGTAAGAATGCATTAACTTATTAATC  848

seq1  CACAGTTCATTGGAAATGAGTGCATGCATTAACAAATGCACTCAAATGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCATTGGAAATGAGTGCATGCATTAACAAATGCACTCAAATGTT  898

seq1  AGCATATATGCAATAAACAATAACTTTACAAAGAATTTACTTTTATTAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATGCAATAAACAATAACTTTACAAAGAATTTACTTTTATTAGC  948

seq1  TTATGTTGATCTTAACAAAGTGGAATATGTTATTACATTTCAAATTGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGATCTTAACAAAGTGGAATATGTTATTACATTTCAAATTGTTT  998

seq1  TTGAGAAAATGTCTGTGGTGCTTTGGATAAGAATGTTCCCATAGGCTCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAATGTCTGTGGTGCTTTGGATAAGAATGTTCCCATAGGCTCAT  1048

seq1  ATATATGAATGCTTAGTCACCAGGGAGTGGCACAATTTAAAAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAATGCTTAGTCACCAGGGAGTGGCACAATTTAAAAGAATTC  1096