BAC Information

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BAC

Clone NameB6Ng01-016H13
Chromosome16 (Build37)
Map Location 90,794,743 - 90,948,064
singlet/doubletdoublet
Overlap gene4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap
Downstream gene1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H13.bB6Ng01-016H13.g
ACCDH850424DH850425
length1,2651,082
definitionDH850424|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H13, 5' end.DH850425|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,946,776 - 90,948,064)(90,794,743 - 90,795,834)
sequence
gaattccttcatttttattcttaaataagtcatatgtttgacaatgttct
ggttaacctgaagctttataaattagagactatgtggtccaagaatctag
tatttatagatttttctaatagaaggtgcttctaaagattttggcattga
gctcgatgttcttaaaagatcactaagaccacaactatatgagctgtgct
atttaatagagccattgtacttgaatttcttctcaaaatggaaagactta
gataatgcttgatcatatcttctactctcattgtcctcagagtaattctc
tcttcgtccataggctatcttcctaatgagtttacaccatattgtaacgc
agctgtaaatatatgtctatgcctgtcttctgtcctgatcctactagtct
attgtagaaacctgaaagacctcaccctaagatagctgtatccacagtca
gacctctgatgggacaggctaagctcttgggagctgtggctcaggagcca
tttgtctgccaggctgtaaggagcagctgaccaggtcttcaaggttcatg
ggcagaggtctgtgaagaccgtcaccttagcgtgactccctttgtctccc
gtgcaggtctctaatactcccggctctgtctttacccagagtgcggtgct
cgttttgttgctgtctcctttgtctctgtggcagtgagcggagcagtcag
gtgatgctgtgcactgtggttttactgtttacttaggattcattcttttt
cctttctgcttcaaagcacccaaaagccctggaacagcacggaaagataa
tataggtaaaaacacttgaatatagttacttccccttaaaactggaccat
gcaatagactggggaatagaagtacatggcttcctatttctttttacttt
ttttaaaattttctttcttatacttaaatacacaatgcgattgatgtctt
tgtttcaggcgtaatcagccttcccctcaagccggacttgcaagcccagg
acccgctggatacggtgcggctagaccggtaggtacactcgcttgggagt
taggaggtggtgtgtcctagatccagtttgcagctaggcttctgttactg
gaagaatccaaccaacctcccaagcgcagtgctcacctctagagtatggc
ctggttcccgcgtgactatgctcctagacttgtaaggacggcacatactg
tttgatcaaatacggatgtctattatggcgccatcaagaatctgggtctc
tcaaatatgaagagc
gaattcttttgtgcttgttcgtttgttttttcgagacggggtttctgtat
agccctagctgtcctggaactcactctgtagaccaggctggcctcgaact
cagaaatctgcctgcctttcaagtgctgggattaaaggtgtgcgccacca
ctgactggcttgtttgttgagacagagtctctttactatgtagttcagcc
tatcctggaacctcctatgtagtccaggctgggcttgaactcagagagcc
atctgcctcccaaatgctgggattaaagacatgctaccaggctaaattct
taaaagaaatgctatgtagccaggagggagtaataccattagatttggtc
cttactgataaaatcttgtaactgtgaatgaggaagtcctccccctggca
gctggaggagcagggctgtttagctttggaatcagatttcctgcacccag
tgcagtctctgccactcacagggtagtgctttggcctctctgtggctacc
ttatgcaaaactgggctaacagagctcagggttgctaataagcctgtgtc
agcaggagcttccctccctgggaaggtccactctaggggctctttctctg
atccagggacactgttgtctttaaatacacacatccactaccttctcctt
ggtaaacggacctttatctgtatgcctgaattacaactgtgagtctactg
cctccaagggcactgataaatacacactctctaaatctcccctaaatgag
tttaatcatgtccatgattttgacctgaagcatcacagattccactgggc
tgtcaggatgcgccaccctttaagaaacatacacacaggggttcacagag
caatgtactttacctgccagaagttcccaaagaggcatcataaaaactaa
tcccatgctttcgagaacagcagagatccatcaggaagttatgacgagtc
cctcacatggctttcccgcctcttcagctgatatctagagggtttaataa
actattcattccaagtccttagtgacagctacaaaattaaactgggcata
tcacgtgatgatagcactaggatgtactttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90946776_90948064
seq2: B6Ng01-016H13.b_33_1297 (reverse)

seq1  GCTCTTCATATTTTTGAAAGACACCAAGATCTTTATTTAGCAGCCATAAA  50
      ||||||||||  ||||| |||| |||   |||| ||   |  ||||||  
seq2  GCTCTTCATA--TTTGAGAGAC-CCAGATTCTTGAT---GGCGCCATA--  42

seq1  TAAAGCCATACCTTATTTTTATCCAAACCAGTTAGTGCAGTCATTAGCAA  100
       | || ||| || || ||| |||  || ||||  |||| ||| ||| |||
seq2  -ATAGACAT-CCGTA-TTTGATC--AAACAGTATGTGCCGTCCTTA-CAA  86

seq1  GTCTAGGAGCTATAGCTCA-GCGAGGACCAGCCCTTACTCTAGAGCTGAG  149
      |||||||||| |||| ||| ||| | ||||| || |||||||||| ||| 
seq2  GTCTAGGAGC-ATAG-TCACGCGGGAACCAGGCCATACTCTAGAGGTGA-  133

seq1  GCACTGCCGCCTGGGAGGTTTGTTTTGATTCTCTCCAAGGTAACAGACAG  199
      |||||| ||| ||||||| ||| || |||||| ||||  |||||||| ||
seq2  GCACTG-CGCTTGGGAGG-TTGGTTGGATTCT-TCCA--GTAACAGA-AG  177

seq1  CCTAGCTGCAAACTGGAACCTAGGACACA-CACCTCTTAACTCCCAGGCG  248
      |||||||||||||||| | |||||||||| |||||| ||||||||| |||
seq2  CCTAGCTGCAAACTGG-ATCTAGGACACACCACCTCCTAACTCCCAAGCG  226

seq1  AGGTGTTACCTACCGGTCTAGCCGCACCGTATCCAGCGGGTCCTGGGCCT  298
      | ||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  A-GTG-TACCTACCGGTCTAGCCGCACCGTATCCAGCGGGTCCTGGGCTT  274

seq1  GCAAGTCCGGCTTGAGGGGAAGGCTGATTACGCCCTGAAACAAAGACATC  348
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAAGTCCGGCTTGAGGGGAAGGCTGATTACG-CCTGAAACAAAGACATC  323

seq1  AATCGCATTGTGTATTTAAGTATAAGAAAGAAAATTTTAAAAAAAGTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCATTGTGTATTTAAGTATAAGAAAGAAAATTTTAAAAAAAGTAAA  373

seq1  AAGAAATAGGAAGCCATGTACTTCTATT-CCCAGTCTATTGCATGGTCCA  447
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGAAATAGGAAGCCATGTACTTCTATTCCCCAGTCTATTGCATGGTCCA  423

seq1  GTTTTAAGGGGAAGTAACTATATTCAAGTGTTTTTACCTATATTATCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGGGGAAGTAACTATATTCAAGTGTTTTTACCTATATTATCTTT  473

seq1  CCGTGCTGTTCCAGGGCTTTTGGGTGCTTTGAAGCAGAAAGGAAAAAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCTGTTCCAGGGCTTTTGGGTGCTTTGAAGCAGAAAGGAAAAAGAA  523

seq1  TGAATCCTAAGTAAACAGTAAAACCACAGTGCACAGCATCACCTGACTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTAAGTAAACAGTAAAACCACAGTGCACAGCATCACCTGACTGC  573

seq1  TCCGCTCACTGCCACAGAGACAAAGGAGACAGCAACAAAACGAGCACCGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCACTGCCACAGAGACAAAGGAGACAGCAACAAAACGAGCACCGC  623

seq1  ACTCTGGGTAAAGACAGAGCCGGGAGTATTAGAGACCTGCACGGGAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTAAAGACAGAGCCGGGAGTATTAGAGACCTGCACGGGAGACA  673

seq1  AAGGGAGTCACGCTAAGGTGACGGTCTTCACAGACCTCTGCCCATGAACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTCACGCTAAGGTGACGGTCTTCACAGACCTCTGCCCATGAACC  723

seq1  TTGAAGACCTGGTCAGCTGCTCCTTACAGCCTGGCAGACAAATGGCTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCTGGTCAGCTGCTCCTTACAGCCTGGCAGACAAATGGCTCCT  773

seq1  GAGCCACAGCTCCCAAGAGCTTAGCCTGTCCCATCAGAGGTCTGACTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAGCTCCCAAGAGCTTAGCCTGTCCCATCAGAGGTCTGACTGTG  823

seq1  GATACAGCTATCTTAGGGTGAGGTCTTTCAGGTTTCTACAATAGACTAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGCTATCTTAGGGTGAGGTCTTTCAGGTTTCTACAATAGACTAGT  873

seq1  AGGATCAGGACAGAAGACAGGCATAGACATATATTTACAGCTGCGTTACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGGACAGAAGACAGGCATAGACATATATTTACAGCTGCGTTACA  923

seq1  ATATGGTGTAAACTCATTAGGAAGATAGCCTATGGACGAAGAGAGAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGTAAACTCATTAGGAAGATAGCCTATGGACGAAGAGAGAATTA  973

seq1  CTCTGAGGACAATGAGAGTAGAAGATATGATCAAGCATTATCTAAGTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGACAATGAGAGTAGAAGATATGATCAAGCATTATCTAAGTCTT  1023

seq1  TCCATTTTGAGAAGAAATTCAAGTACAATGGCTCTATTAAATAGCACAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGAGAAGAAATTCAAGTACAATGGCTCTATTAAATAGCACAGC  1073

seq1  TCATATAGTTGTGGTCTTAGTGATCTTTTAAGAACATCGAGCTCAATGCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGTTGTGGTCTTAGTGATCTTTTAAGAACATCGAGCTCAATGCC  1123

seq1  AAAATCTTTAGAAGCACCTTCTATTAGAAAAATCTATAAATACTAGATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTAGAAGCACCTTCTATTAGAAAAATCTATAAATACTAGATTC  1173

seq1  TTGGACCACATAGTCTCTAATTTATAAAGCTTCAGGTTAACCAGAACATT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCACATAGTCTCTAATTTATAAAGCTTCAGGTTAACCAGAACATT  1223

seq1  GTCAAACATATGACTTATTTAAGAATAAAAATGAAGGAATTC  1289
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACATATGACTTATTTAAGAATAAAAATGAAGGAATTC  1265

seq1: chr16_90794743_90795834
seq2: B6Ng01-016H13.g_69_1150

seq1  GAATTCTTTTGTGCTTGTTCGTTTGTTTTTTCGAGACGGGGTTTCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGCTTGTTCGTTTGTTTTTTCGAGACGGGGTTTCTGTAT  50

seq1  AGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  100

seq1  CAGAAATCTGCCTGCCTTTCAAGTGCTGGGATTAAAGGTGTGCGCCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGCCTGCCTTTCAAGTGCTGGGATTAAAGGTGTGCGCCACCA  150

seq1  CTGACTGGCTTGTTTGTTGAGACAGAGTCTCTTTACTATGTAGTTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGCTTGTTTGTTGAGACAGAGTCTCTTTACTATGTAGTTCAGCC  200

seq1  TATCCTGGAACCTCCTATGTAGTCCAGGCTGGGCTTGAACTCAGAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGAACCTCCTATGTAGTCCAGGCTGGGCTTGAACTCAGAGAGCC  250

seq1  ATCTGCCTCCCAAATGCTGGGATTAAAGACATGCTACCAGGCTAAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCCCAAATGCTGGGATTAAAGACATGCTACCAGGCTAAATTCT  300

seq1  TAAAAGAAATGCTATGTAGCCAGGAGGGAGTAATACCATTAGATTTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATGCTATGTAGCCAGGAGGGAGTAATACCATTAGATTTGGTC  350

seq1  CTTACTGATAAAATCTTGTAACTGTGAATGAGGAAGTCCTCCCCCTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGATAAAATCTTGTAACTGTGAATGAGGAAGTCCTCCCCCTGGCA  400

seq1  GCTGGAGGAGCAGGGCTGTTTAGCTTTGGAATCAGATTTCCTGCACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGAGCAGGGCTGTTTAGCTTTGGAATCAGATTTCCTGCACCCAG  450

seq1  TGCAGTCTCTGCCACTCACAGGGTAGTGCTTTGGCCTCTCTGTGGCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTCTGCCACTCACAGGGTAGTGCTTTGGCCTCTCTGTGGCTACC  500

seq1  TTATGCAAAACTGGGCTAACAGAGCTCAGGGTTGCTAATAAGCCTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAAACTGGGCTAACAGAGCTCAGGGTTGCTAATAAGCCTGTGTC  550

seq1  AGCAGGAGCTTCCCTCCCTGGGAAGGTCCACTCTAGGGGCTCTTTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCTTCCCTCCCTGGGAAGGTCCACTCTAGGGGCTCTTTCTCTG  600

seq1  ATCCAGGGACACTGTTGTCTTTAAATACACACATCCACTACCTTCTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGACACTGTTGTCTTTAAATACACACATCCACTACCTTCTCCTT  650

seq1  GGTAAACGGACCTTTATCTGTATGCCTGAATTACAACTGTGAGTCTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACGGACCTTTATCTGTATGCCTGAATTACAACTGTGAGTCTACTG  700

seq1  CCTCCAAGGGCACTGATAAATACACACTCTCTAAATCTCCCCTAAATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGGGCACTGATAAATACACACTCTCTAAATCTCCCCTAAATGAG  750

seq1  TTTAATCATGTCCATGATTTTGACCTGAAGCATCACAGATTCCACTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATGTCCATGATTTTGACCTGAAGCATCACAGATTCCACTGGGC  800

seq1  TGTCAGGATGCGCCACCCTTTAAGAAACATACACACAGGGGTTCACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGATGCGCCACCCTTTAAGAAACATACACACAGGGGTTCACAGAG  850

seq1  CAATGTACTTTACCTGCCAGAAGTTCCCAAAGAGGCATCATAAAAACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACTTTACCTGCCAGAAGTTCCCAAAGAGGCATCATAAAAACTAA  900

seq1  TCCCATGCTTTCGAGAACAGCAGAGATCCATCAGGAAGTTATGAACGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TCCCATGCTTTCGAGAACAGCAGAGATCCATCAGGAAGTTATG-ACGA-G  948

seq1  TCCCTCACCATGGCTTTCCCCGCCTCTTCAGCTGATATCTAGAAGGGTTT  1000
      ||||||| ||||||||| |||||||||||||||||||||||| |||||||
seq2  TCCCTCA-CATGGCTTT-CCCGCCTCTTCAGCTGATATCTAG-AGGGTTT  995

seq1  AATAAACTATCAATTCCAAGGTCCTTAGTGACAGCTACAAAATTAAAACT  1050
      ||||||||||  ||||||| |||||||||||||||||||||||| |||||
seq2  AATAAACTATTCATTCCAA-GTCCTTAGTGACAGCTACAAAATT-AAACT  1043

seq1  GGGCAATATCACGTGATGATAGCAACTAGGGATGTACTTTAA  1092
      |||| |||||||||||||||||| |||| |||||||||||||
seq2  GGGC-ATATCACGTGATGATAGC-ACTA-GGATGTACTTTAA  1082